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Status
Public on Dec 31, 2012
Title
[PIGTEATa520665F] Custom Affymetrix porcine QTL-region-specific microarray [FBN_PigTeat_1.5k v1]
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Sus scrofa Manufacturer
Affymetrix
Manufacture protocol
see manufacturer's web site
Description
[PIGTEATa520665F] Custom Affymetrix porcine QTL-region-specific microarray [FBN_PigTeat_1.5k v1]
Submission date
Dec 06, 2011
Last update date
Dec 31, 2012
Contact name
Klaus Wimmers
E-mail(s)
s.wimmers@fbn-dummerstorf.de Phone
0049 3820868700
Organization name
Leibniz Institute for Farm Animal Biology (FBN)
Street address
Wilhelm-Stahl-Allee 2
City
Dummerstorf
ZIP/Postal code
18196
Country
Germany
Samples (30)
GSM845340 , GSM845341 , GSM845342 , GSM845343 , GSM845344 , GSM845345
GSM845346 ,
GSM845347 ,
GSM845348 ,
GSM845349 ,
GSM845350 ,
GSM845351 ,
GSM845352 ,
GSM845353 ,
GSM845354 ,
GSM845355 ,
GSM845356 ,
GSM845357 ,
GSM845358 ,
GSM845359 ,
GSM845360 ,
GSM845361 ,
GSM845362 ,
GSM845363 ,
GSM845364 ,
GSM845365 ,
GSM845366 ,
GSM845367 ,
GSM845368 ,
GSM845369 Series (1)
GSE34240 QTL-region-specific microrrays reveal differential expression of signaling pathways associated with the liability for the inverted teat defect
Data table header descriptions ID Identifier Identifier Source Description SPOT_ID controls or QTL region identification
Sequence Type
Data table ID Identifier Identifier Source Description SPOT_ID Sequence Type AFFX-BioB-3_at
J04423.1
GenBank
E. coli /GEN=bioB /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 2755-3052 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds.
--control
Control Sequence
AFFX-BioB-5_at
J04423.1
GenBank
E. coli /GEN=bioB /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 2032-2305 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds.
--control
Control Sequence
AFFX-BioB-M_at
J04423.1
GenBank
E. coli /GEN=bioB /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 2482-2739 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds.
--control
Control Sequence
AFFX-BioC-3_at
J04423.1
GenBank
E. coli /GEN=bioC /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 4626-4878 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds.
--control
Control Sequence
AFFX-BioC-5_at
J04423.1
GenBank
E. coli /GEN=bioC /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 4218-4566 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds.
--control
Control Sequence
AFFX-BioDn-3_at
J04423.1
GenBank
E. coli /GEN=bioD /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 5286-5570 of gb:J04423.1, not 100% identical /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds.
--control
Control Sequence
AFFX-BioDn-5_at
J04423.1
GenBank
E. coli /GEN=bioD /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 4980-5256 of gb:J04423.1, not 100% identical /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds.
--control
Control Sequence
AFFX-CreX-3_at
X03453.1
GenBank
Bacteriophage P1 /GEN=cre /DB_XREF=gb:X03453.1 /NOTE=SIF corresponding to nucleotides 1089-1495 of gb:X03453.1 /DEF=Bacteriophage P1 cre gene for recombinase protein.
--control
Control Sequence
AFFX-CreX-5_at
X03453.1
GenBank
Bacteriophage P1 /GEN=cre /DB_XREF=gb:X03453.1 /NOTE=SIF corresponding to nucleotides 513-1047 of gb:X03453.1 /DEF=Bacteriophage P1 cre gene for recombinase protein.
--control
Control Sequence
AFFX-DapX-3_at
L38424.1
GenBank
B. subtilis /GEN=jojG /DB_XREF=gb:L38424.1 /NOTE=SIF corresponding to nucleotides 2684-3130 of gb:L38424.1 /DEF=Bacillus subtilis dihydropicolinate reductase (jojE) gene, complete cds; poly(A) polymerase (jojI) gene, complete cds; biotin acetyl-CoA-carboxylase ligase (birA) gene, complete cds; jojC, jojD, jojF, jojG, jojH genes, complete cds's.
--control
Control Sequence
AFFX-DapX-5_at
L38424.1
GenBank
B. subtilis /GEN=dapB /DB_XREF=gb:L38424.1 /NOTE=SIF corresponding to nucleotides 1428-1926 of gb:L38424.1 /DEF=Bacillus subtilis dihydropicolinate reductase (jojE) gene, complete cds; poly(A) polymerase (jojI) gene, complete cds; biotin acetyl-CoA-carboxylase ligase (birA) gene, complete cds; jojC, jojD, jojF, jojG, jojH genes, complete cds's.
--control
Control Sequence
AFFX-DapX-M_at
L38424.1
GenBank
B. subtilis /GEN=dapB, jojF /DB_XREF=gb:L38424.1 /NOTE=SIF corresponding to nucleotides 2020-2580 of gb:L38424.1 /DEF=Bacillus subtilis dihydropicolinate reductase (jojE) gene, complete cds; poly(A) polymerase (jojI) gene, complete cds; biotin acetyl-CoA-carboxylase ligase (birA) gene, complete cds; jojC, jojD, jojF, jojG, jojH genes, complete cds's.
--control
Control Sequence
AFFX-LysX-3_at
X17013.1
GenBank
B. subtilis /GEN=lys /DB_XREF=gb:X17013.1 /NOTE=SIF corresponding to nucleotides 1061-1343 of gb:X17013.1, not 100% identical /DEF=B subtilis lys gene for diaminopimelate decarboxylase (EC 4.1.1.20).
--control
Control Sequence
AFFX-LysX-5_at
X17013.1
GenBank
B. subtilis /GEN=lys /DB_XREF=gb:X17013.1 /NOTE=SIF corresponding to nucleotides 387-658 of gb:X17013.1, not 100% identical /DEF=B subtilis lys gene for diaminopimelate decarboxylase (EC 4.1.1.20).
--control
Control Sequence
AFFX-LysX-M_at
X17013.1
GenBank
B. subtilis /GEN=lys /DB_XREF=gb:X17013.1 /NOTE=SIF corresponding to nucleotides 720-990 of gb:X17013.1, not 100% identical /DEF=B subtilis lys gene for diaminopimelate decarboxylase (EC 4.1.1.20).
--control
Control Sequence
AFFX-PheX-3_at
M24537.1
GenBank
B. subtilis /GEN=pheB /DB_XREF=gb:M24537.1 /NOTE=SIF corresponding to nucleotides 2885-3326 of gb:M24537.1, not 100% identical /DEF=Bacillus subtillis sporulation protein (spoOB), GTP-binding protein (obg), phenylalanine biosynthesis associated protein (pheB), and monofunctional prephenate dehydratase (pheA) genes, complete cds.
--control
Control Sequence
AFFX-PheX-5_at
M24537.1
GenBank
B. subtilis /GEN=pheA /DB_XREF=gb:M24537.1 /NOTE=SIF corresponding to nucleotides 2028-2375 of gb:M24537.1, not 100% identical /DEF=Bacillus subtillis sporulation protein (spoOB), GTP-binding protein (obg), phenylalanine biosynthesis associated protein (pheB), and monofunctional prephenate dehydratase (pheA) genes, complete cds.
--control
Control Sequence
AFFX-PheX-M_at
M24537.1
GenBank
B. subtilis /GEN=pheA /DB_XREF=gb:M24537.1 /NOTE=SIF corresponding to nucleotides 2437-2828 of gb:M24537.1 /DEF=Bacillus subtillis sporulation protein (spoOB), GTP-binding protein (obg), phenylalanine biosynthesis associated protein (pheB), and monofunctional prephenate dehydratase (pheA) genes, complete cds.
--control
Control Sequence
AFFX-r2-Bs-dap-3_at
L38424.1
GenBank
B. subtilis /GEN=jojG /DB_XREF=gb:L38424.1 /NOTE=SIF corresponding to nucleotides 2634-3089 of gb:L38424.1 /DEF=Bacillus subtilis dihydropicolinate reductase (jojE) gene, complete cds; poly(A) polymerase (jojI) gene, complete cds; biotin acetyl-CoA-carboxylase ligase (birA) gene, complete cds; jojC, jojD, jojF, jojG, jojH genes, complete cds's.
--control
Control Sequence
AFFX-r2-Bs-dap-5_at
L38424.1
GenBank
B. subtilis /GEN=dapB /DB_XREF=gb:L38424.1 /NOTE=SIF corresponding to nucleotides 1439-1846 of gb:L38424.1 /DEF=Bacillus subtilis dihydropicolinate reductase (jojE) gene, complete cds; poly(A) polymerase (jojI) gene, complete cds; biotin acetyl-CoA-carboxylase ligase (birA) gene, complete cds; jojC, jojD, jojF, jojG, jojH genes, complete cds's.
--control
Control Sequence
1587 60 Kbytes .Supplementary file Size Download File type/resource GPL14968_PIGTEATa520665F.CDF.gz
454.0 Kb
(ftp) (http) CDF
GPL14968_PIGTEATa520665F.CDF.txt.gz
182.1 Kb
(ftp) (http) TXT
GPL14968_PIGTEATa520665F.CIF.gz
1.9 Kb
(ftp) (http) CIF
GPL14968_PIGTEATa520665F.GIN.gz
15.1 Kb
(ftp) (http) GIN
GPL14968_PIGTEATa520665F.GRC.gz
3.9 Kb
(ftp) (http) GRC
GPL14968_PIGTEATa520665F.PSI.gz
10.1 Kb
(ftp) (http) PSI
GPL14968_PIGTEATa520665F.SIF.gz
222.1 Kb
(ftp) (http) SIF
GPL14968_PIGTEATa520665F_probeSequences.txt.gz
321.6 Kb
(ftp) (http) TXT
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