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Platform GPL15 Query DataSets for GPL15
Status Public on Jul 25, 2001
Title HP_002
Technology type spotted DNA/cDNA
Distribution non-commercial
Organism Helicobacter pylori
 
Description A microarray with 4623 spot features.
Tip Configuration: Standard 16-tip
Columns per Sector: 17
Rows per Sector: 17
Column Spacing: 240
Row Spacing: 240
 
Submission date Jul 25, 2001
Last update date May 26, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Samples (423) GSM470, GSM471, GSM472, GSM473, GSM474, GSM475 
Series (15)
GSE6 Genetic diversity among Helicobacter pylori strains
GSE3135 H. pylori strain comparisons
GSE3137 H. pilory diversity in human

Data table header descriptions
ID
NAME name of spot
ORF TIGR_ID or ASTRA_ID
ORF TIGR_ID or ASTRA_ID
SPOT_ID
DESCRIPTION description of spot
PROCESS
OPERON
AMPLICON LENGTH
GENE NAME
SECTOR spot sector grid coordinate
SECTORROW spot row grid coordinate
SECTORCOL spot column grid coordinate
PLATE clone plate identifier
PROW clone plate row
PCOL clone plate column
FAILED
IS_CONTAMINATED

Data table
ID NAME ORF ORF SPOT_ID DESCRIPTION PROCESS OPERON AMPLICON LENGTH GENE NAME SECTOR SECTORROW SECTORCOL PLATE PROW PCOL FAILED IS_CONTAMINATED
1 HPY1213 HP1213 JHP1136 polynucleotide phosphorylase , POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE Transcription, Degradation of RNA 633 2014 pnp 1 1 1 1 A 1 0 U
2 HPY0453 HP0453 227 3012 1 1 2 1 A 5 0 U
3 HPY0775 HP0775 JHP0712 penta-phosphate guanosine-3'-pyrophosphohydrolase , GUANOSINE-3',5'-BIS(DIPHOSPHATE) 3'-PYROPHOSPHOHYDROLASE Regulatory Functions, General 393 2265 spoT 1 1 3 1 A 9 0 U
4 HPY0527 HP0527 JHP0476 cag pathogenicity island protein , cag island protein Cellular Processes, Transformation 267 5735 orf13/14 1 1 4 1 A 13 1 U
5 HPY0592 HP0592 type III restriction enzyme R protein DNA metabolism,Restriction/modification 302 2956 res 1 1 5 1 A 17 1 U
6 HPY1116 HP1116 JHP1044 575 2788 1 1 6 1 A 21 1 U
7 HPY0922 HP0922 JHP0856 toxin-like outer membrane protein, putative vacuolating cytotoxin (VacA) paralog Cell envelope, Other 472 4706 1 1 7 1 E 1 1 U
8 HPY0547 HP0547 JHP0495 cag pathogenicity island protein , cag island protein, CYTOTOXICITY ASSOCIATED IMMUNODOMINANT ANTIGEN Cellular Processes, Transformation 276 3484 cagA 1 1 8 1 E 5 1 U
9 HPY1222 HP1222 JHP1143 D-lactate dehydrogenase energy metabolism, aerobic 637 2802 dld 1 1 9 1 E 9 0 U
10 HPY1198 HP1198 JHP1121 DNA-directed RNA polymerase, beta subunit Transcription, DNA-dependent RNA polymerase 621 8631 rpoB 1 1 10 1 E 13 1 U
11 HPY0919 HP0919 JHP0853 carbamoyl-phosphate synthase (glutamine-hydrolysing) , CARBAMOYL-PHOSPHATE SYNTHASE LARGE CHAIN Pyrimidine ribonucleotide biosynthesis 469 3179 pyrAb 1 1 11 1 E 17 1 U
12 HPY0441 HP0441 VirB4 homolog Cellular Processes, Transformation 223 2384 1 1 12 1 E 21 0 U
13 HPY1636 JHP0928 1035 6609 1 1 13 1 I 1 1 U
14 HPY0199 HP0199 JHP0185 104 300 1 1 14 1 I 5 0 U
15 HPY0967 HP0967 virulence associated protein D Other categories, Adaptations and atypical conditions 490 240 vapD 1 1 15 1 I 9 1 U
16 HPY1040 HP1040 JHP0384 ribosomal protein S15 , 30S RIBOSOMAL PROTEIN S15 Translation, Ribosomal proteins: synthesis and modification 535 223 rpsO 1 1 16 1 I 13 0 U
17 HPY1295 HP1295 JHP1215 ribosomal protein S11 , 30S RIBOSOMAL PROTEIN S11 Translation, Ribosomal proteins: synthesis and modification 665 341 rpsK 1 1 17 1 I 17 0 U
18 HPY0938 HP0938 JHP0873 478 204 1 2 1 1 I 21 0 U
19 HPY1046 HP1046 JHP0379 conserved hypothetical protein Hypothetical, General 540 350 1 2 2 1 M 1 0 U
20 HPY0046 HP0046 24 103 1 2 3 1 M 5 1 U

Total number of rows: 4608

Table truncated, full table size 498 Kbytes.






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