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Platform GPL15074 Query DataSets for GPL15074
Status Public on Sep 01, 2012
Title Agilent-020349 MMLv2.2 [Probe Name version]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Mus musculus
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description MML chip - for CTCF
Arrays of this design have barcodes that begin with 16020349 or 2520349.
Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.
The ID column represents the Agilent Feature Extraction feature number.
Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).
To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Dec 29, 2011
Last update date Sep 01, 2012
Contact name Junfang Zhang
E-mail(s) zhangj3@mail.nih.gov
Phone 301-402-9232
Fax 301-594-3996
Organization name NIH
Department NCI-CCR
Lab Laboratory of Cellular Oncology
Street address 37 Convent Dr.
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Samples (1) GSM854916
Series (1)
GSE34770 ChIP-on-chip from murine myeloid cell line M1 and virus-induced myeloid leukemia cell lines for H3K4me3, H3K9/14ac, H3K4me1, H3K27me3, H3K9me3 and CTCF

Data table header descriptions
ID Probe name
SPOT_ID Spot identifier
CONTROL_TYPE Control type
GB_ACC GenBank Accession number
ACCESSIONS GenBankAccession
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
CYTOBAND Cytoband
DESCRIPTION Description

Data table
ID SPOT_ID CONTROL_TYPE GB_ACC ACCESSIONS GENE_SYMBOL GENE_NAME ACCESSION_STRING CHROMOSOMAL_LOCATION CYTOBAND DESCRIPTION
(-)3xSLv1 (-)3xSLv1 neg
A_68_P01159296 A_68_P01159296 FALSE NM_145527 NM_145527:28143 Madd MAP-kinase activating death domain ref|NM_145527:28143 chr2:90994963-90995022 mm|qE1 INSIDE
A_68_P01159297 A_68_P01159297 FALSE NM_145527 NM_145527:28650 Madd MAP-kinase activating death domain ref|NM_145527:28650 chr2:90994459-90994512 mm|qE1 INSIDE
A_68_P01159299 A_68_P01159299 FALSE NM_145527 NM_145527:28529 Madd MAP-kinase activating death domain ref|NM_145527:28529 chr2:90994577-90994636 mm|qE1 INSIDE
A_68_P01159300 A_68_P01159300 FALSE NM_145527 NM_145527:28931 Madd MAP-kinase activating death domain ref|NM_145527:28931 chr2:90994175-90994234 mm|qE1 INSIDE
A_68_P01159301 A_68_P01159301 FALSE NM_145527 NM_145527:28221 Madd MAP-kinase activating death domain ref|NM_145527:28221 chr2:90994886-90994944 mm|qE1 INSIDE
A_68_P01159302 A_68_P01159302 FALSE NM_145527 NM_145527:28429 Madd MAP-kinase activating death domain ref|NM_145527:28429 chr2:90994684-90994729 mm|qE1 INSIDE
A_68_P01159303 A_68_P01159303 FALSE NM_145527 NM_145527:28080 Madd MAP-kinase activating death domain ref|NM_145527:28080 chr2:90995026-90995085 mm|qE1 INSIDE
A_68_P01159305 A_68_P01159305 FALSE NM_145527 NM_145527:28331 Madd MAP-kinase activating death domain ref|NM_145527:28331 chr2:90994782-90994827 mm|qE1 INSIDE
A_68_P01159306 A_68_P01159306 FALSE NM_145527 NM_145527:28765 Madd MAP-kinase activating death domain ref|NM_145527:28765 chr2:90994341-90994400 mm|qE1 INSIDE
A_68_P01159307 A_68_P01159307 FALSE NM_145527 NM_145527:27971 Madd MAP-kinase activating death domain ref|NM_145527:27971 chr2:90995138-90995190 mm|qE1 INSIDE
A_68_P01159308 A_68_P01159308 FALSE NM_145527 NM_145527:28864 Madd MAP-kinase activating death domain ref|NM_145527:28864 chr2:90994242-90994301 mm|qE1 INSIDE
A_68_P01163199 A_68_P01163199 FALSE NM_008653 NM_008653:5950 Mybpc3 myosin binding protein C, cardiac ref|NM_008653:5950|ref|NM_011355:27297 chr2:90964226-90964274 mm|qE1 INSIDE
A_68_P01181385 A_68_P01181385 FALSE NM_008653 NM_008653:8117 Mybpc3 myosin binding protein C, cardiac ref|NM_008653:8117 chr2:90966390-90966445 mm|qE1 INSIDE
A_68_P01183903 A_68_P01183903 FALSE NM_008653 NM_008653:12306 Mybpc3 myosin binding protein C, cardiac ref|NM_008653:12306|ref|NM_145527:52529 chr2:90970584-90970628 mm|qE1 INSIDE
A_68_P01193418 A_68_P01193418 FALSE NM_145527 NM_145527:31206 Madd MAP-kinase activating death domain ref|NM_145527:31206 chr2:90991900-90991959 mm|qE1 INSIDE
A_68_P01193419 A_68_P01193419 FALSE NM_145527 NM_145527:31305 Madd MAP-kinase activating death domain ref|NM_145527:31305 chr2:90991804-90991856 mm|qE1 INSIDE
A_68_P01193717 A_68_P01193717 FALSE NM_145527 NM_145527:32430 Madd MAP-kinase activating death domain ref|NM_145527:32430 chr2:90990676-90990735 mm|qE1 INSIDE
A_68_P01198285 A_68_P01198285 FALSE NM_008653 NM_008653:13208 Mybpc3 myosin binding protein C, cardiac ref|NM_008653:13208|ref|NM_145527:51627 chr2:90971485-90971531 mm|qE1 INSIDE
A_68_P01198287 A_68_P01198287 FALSE NM_008653 NM_008653:12940 Mybpc3 myosin binding protein C, cardiac ref|NM_008653:12940|ref|NM_145527:51895 chr2:90971218-90971262 mm|qE1 INSIDE

Total number of rows: 15264

Table truncated, full table size 2051 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL15074_020349_D_GEO_20091125.txt.gz 388.6 Kb (ftp)(http) TXT

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