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| Status |
Public on Jan 26, 2012 |
| Title |
NimbleGen Human DNA Methylation 3x720K CpG Island Plus RefSeq Promoter Arrays (090618_HG18_CpG_Refseq_Prom_MeDIP) |
| Technology type |
in situ oligonucleotide |
| Distribution |
custom-commercial |
| Organism |
Homo sapiens |
| Manufacturer |
NimbleGen |
| Manufacture protocol |
see manufacturer's website
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| Description |
Format: 3X720K
Source: UCSC
Build: HG18, NCBI 36
Probe Length: 50-75mer
Median Probe Spacing: 104
090618_HG18_CpG_Refseq_Prom_MeDIP.ndf
090618_HG18_CpG_Refseq_Prom_MeDIP.pos
090618_HG18_CpG_Refseq_Prom_MeDIP.gff
090618_HG18_CpG_Refseq_Prom_MeDIP_HX3.ncd
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| |
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| Submission date |
Jan 24, 2012 |
| Last update date |
Jan 26, 2012 |
| Contact name |
Marc Jung |
| E-mail(s) |
mjung@coh.org
|
| Organization name |
City Of Hope
|
| Department |
Biology
|
| Lab |
Gerd Pfeifer
|
| Street address |
1500 East Duarte Street
|
| City |
Duarte |
| State/province |
CA |
| ZIP/Postal code |
91010 |
| Country |
USA |
| |
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| Samples (47)
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GSM866370, GSM866371, GSM866372, GSM866373, GSM866374, GSM866375
GSM866376, GSM866377, GSM866378, GSM866379, GSM866380, GSM866381, GSM866382, GSM866383, GSM866384, GSM866385, GSM866386, GSM866387, GSM866388, GSM866389, GSM866390, GSM866391, GSM866392, GSM866393, GSM866394, GSM866395, GSM866396, GSM866397, GSM866398, GSM1398943, GSM1398944, GSM1431973, GSM1431974, GSM1431975, GSM1431976, GSM1431977, GSM1431978, GSM1431979, GSM1431980, GSM1431981, GSM1431982, GSM1431983, GSM1431984, GSM1431985, GSM1431986, GSM1431987, GSM1431988
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| Series (4)
|
| GSE35341 |
The DNA methylation landscape of small cell lung cancer |
| GSE57971 |
MeDIP for ten early passage melanoma cell cultures |
| GSE59260 |
DNA methylation profiles in alcohol-associated hepatocellular carcinoma |
| GSE59261 |
Expression and DNA methylation profiles in alcohol-associated hepatocellular carcinoma |
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| Data table header descriptions |
| ID |
|
| SEQ_ID |
|
| CHROMOSOME |
|
| POSITION |
|
| LENGTH |
|
| GC |
|
| RANGE_GB |
GenBank accession number |
| RANGE_START |
|
| RANGE_END |
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| SEQUENCE |
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| Data table |
| ID |
SEQ_ID |
CHROMOSOME |
POSITION |
LENGTH |
GC |
RANGE_GB |
RANGE_START |
RANGE_END |
SEQUENCE |
| CHR01FS000018603 |
chr1:18598-21673 |
chr1 |
18603 |
50 |
0.54 |
NC_000001.9 |
18603 |
18652 |
TCTTTGGGACCGCGGTTTATACTTTCGAAGTGCTCGGAGCCCTTCCTCCA |
| CHR01FS000018717 |
chr1:18598-21673 |
chr1 |
18717 |
50 |
0.64 |
NC_000001.9 |
18717 |
18766 |
GGAACCCAACGCGGTGTCAGAGAAGTGGGGTCCCCTACGAGGGACCAGGA |
| CHR01FS000018813 |
chr1:18598-21673 |
chr1 |
18813 |
50 |
0.74 |
NC_000001.9 |
18813 |
18862 |
GAACCCGGCAGGGGCGGGAAGACGCAGGAGTGGGGAGGCGGAACCGGGAC |
| CHR01FS000018901 |
chr1:18598-21673 |
chr1 |
18901 |
50 |
0.76 |
NC_000001.9 |
18901 |
18950 |
CTTCCCTGCTAGGGCCGGGCAAGGCCGGGTGCAGGGCGCGGCTCCAGGGA |
| CHR01FS000019023 |
chr1:18598-21673 |
chr1 |
19023 |
50 |
0.74 |
NC_000001.9 |
19023 |
19072 |
GGCACCGGGCAGCGGCCGCGGAACACCAGCTTGGCGCAGGCTTCTCGGTC |
| CHR01FS000019114 |
chr1:18598-21673 |
chr1 |
19114 |
50 |
0.74 |
NC_000001.9 |
19114 |
19163 |
TCCGGGTCCCCTACTTCGCCCCGCCAGGCCCCCACGACCCTACTTCCCGC |
| CHR01FS000019201 |
chr1:18598-21673 |
chr1 |
19201 |
50 |
0.76 |
NC_000001.9 |
19201 |
19250 |
GGAAGCTCCCGCCGCCGCTTCCGCTCTGCCGGAGCCGCTGGGTCCTAGCC |
| CHR01FS000019323 |
chr1:18598-21673 |
chr1 |
19323 |
50 |
0.76 |
NC_000001.9 |
19323 |
19372 |
CGCGGCTCCAGGACCCCGTCGACCCGGAGCGCTGTCCTGTCGGGCCGAGT |
| CHR01FS000019399 |
chr1:18598-21673 |
chr1 |
19399 |
50 |
0.64 |
NC_000001.9 |
19399 |
19448 |
TCACTCCGAGCTCCCGACGTGCACACGGCTCCCATGCGTTGTCTTCCGAG |
| CHR01FS000019499 |
chr1:18598-21673 |
chr1 |
19499 |
50 |
0.62 |
NC_000001.9 |
19499 |
19548 |
ACCTCCGTCCTTTGTCCCATCGCTGCCTTCCCCTCAAGCTCAGGGCCAAG |
| CHR01FS000019617 |
chr1:18598-21673 |
chr1 |
19617 |
50 |
0.76 |
NC_000001.9 |
19617 |
19666 |
CCACGCCCAGGGCCCGCCCCTGCCCTCCAGCCCTACGCCTTGACCCGCTT |
| CHR01FS000019719 |
chr1:18598-21673 |
chr1 |
19719 |
50 |
0.44 |
NC_000001.9 |
19719 |
19768 |
CTTGTGATCTGCTTAGTTCCCACCCCCCTTTAAGAATTCAATAGAGAAGC |
| CHR01FS000019805 |
chr1:18598-21673 |
chr1 |
19805 |
51 |
0.43 |
NC_000001.9 |
19805 |
19855 |
TTGTGAAGTGCCTAGAATAGTCAAAATTCACAGAGACAGAAGCAGTGGTCG |
| CHR01FS000019923 |
chr1:18598-21673 |
chr1 |
19923 |
50 |
0.54 |
NC_000001.9 |
19923 |
19972 |
GATGGAAGGGTGCTGGAAATGAGTGGTAGTGATGGCGGCACAACAGTGTG |
| CHR01FS000019999 |
chr1:18598-21673 |
chr1 |
19999 |
54 |
0.31 |
NC_000001.9 |
19999 |
20052 |
TGCTGAAAAATGGTTTAGACGGTGAATTTTAGGTTATGTATGTTTTACCACAAT |
| CHR01FS000020118 |
chr1:18598-21673 |
chr1 |
20118 |
50 |
0.44 |
NC_000001.9 |
20118 |
20167 |
ATAAAAAGAGCATCATCAGTCCAAAGTCCAGCAGTTGTCCCTCCTGGAAT |
| CHR01FS000020200 |
chr1:18598-21673 |
chr1 |
20200 |
56 |
0.41 |
NC_000001.9 |
20200 |
20255 |
GCCTTTTAGGGTTGCCAGATTAAAAGACAGGATGCCCAGCTAGTTTGAATTTTAGA |
| CHR01FS000020320 |
chr1:18598-21673 |
chr1 |
20320 |
55 |
0.2 |
NC_000001.9 |
20320 |
20374 |
AAAAACATTATTGGTTGTTTATCTGAGATTCAGAATTAAGCATTTTATATTTTAT |
| CHR01FS000020398 |
chr1:18598-21673 |
chr1 |
20398 |
50 |
0.56 |
NC_000001.9 |
20398 |
20447 |
CTCTTCCTAACACTCTCTCCCTCTCCCAGTTTTGTCCGCCTTCCCTGCCT |
| CHR01FS000020520 |
chr1:18598-21673 |
chr1 |
20520 |
58 |
0.4 |
NC_000001.9 |
20520 |
20577 |
CCTTACCAGAGGTAAAGAAGAGATGGATCTCCACTCATGTTGTAGACAGAATGTTTAT |
Total number of rows: 711712
Table truncated, full table size 102184 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GPL15160_090618_HG18_CpG_Refseq_Prom_MeDIP.gff.gz |
2.3 Mb |
(ftp)(http) |
GFF |
| GPL15160_090618_HG18_CpG_Refseq_Prom_MeDIP.ndf.gz |
46.7 Mb |
(ftp)(http) |
NDF |
| GPL15160_090618_HG18_CpG_Refseq_Prom_MeDIP.pos.gz |
6.5 Mb |
(ftp)(http) |
POS |
| GPL15160_090618_HG18_CpG_Refseq_Prom_MeDIP_HX3.ncd.gz |
284 b |
(ftp)(http) |
NCD |
| GPL15160_090618_HG18_CpG_Refseq_Prom_MeDIP_probe_location.gff.gz |
2.7 Mb |
(ftp)(http) |
GFF |
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