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Platform GPL15192 Query DataSets for GPL15192
Status Public on Oct 01, 2012
Title UIUC/Newmark-Smed1 CombiMatrix array
Technology type spotted oligonucleotide
Distribution custom-commercial
Organism Schmidtea mediterranea
Manufacturer CombiMatrix
Manufacture protocol 35- to 40-mer oligonucleotide probes were designed complementary to 11,521 planarian transcripts. In most cases, two unique oligos were designed per transcript. These probes were synthesized on two individual CombiMatrix “CustomArray” oligonucleotide arrays; “Smed1” contained 11,835 probes, while “Smed2” contained 11,584 probes. Most transcripts were represented on only one array. However, ~300 were duplicated between arrays.
 
 
Submission date Feb 06, 2012
Last update date Oct 01, 2012
Contact name Noelle James
Organization name U of IL / HHMI
Department Cell and Developmental Biology
Lab Newmark Lab
Street address 601 S. Goodwin Ave.
City Urbana
State/province IL
ZIP/Postal code 61801
Country USA
 
Samples (4) GSM870713, GSM870714, GSM870715, GSM870716
Series (1)
GSE35565 Expression analysis of purified intestinal phagocytes in Schmidtea mediterranea

Data table header descriptions
ID
SEQUENCE probe sequence
SPOT_ID

Data table
ID SEQUENCE SPOT_ID
Contig1091_20_54 CGGAATTGCTACATGCCGAGTTTACGCTGAAGAGG Contig1091_20_54
Contig5235_836_870 TGGTGCTCTTAGTACCGGATTGGGATATTGTGGAA Contig5235_836_870
Contig822_279_315 CCTCAACTATCCAATGCTGTAGTTTTGTGGAAACCGA Contig822_279_315
Contig819_908_943 ACGAAGATGTCCAGAACAGTGTCGTTCAGAATGTTT Contig819_908_943
Contig217_195_229 CATGGCTATTGCTCGAGTTGTTGCACGAAAACATG Contig217_195_229
Contig4092_594_628 CAGTTGTTGAACCAATCCGTATCTGGCCAATTTGG Contig4092_594_628
Contig2190_213_250 CAAAGCGATTCAACTTATGGAATGCGTCAATTGAACCT Contig2190_213_250
Contig1748_757_791 TTTGGAAGTAAGCTACAGCGGACGAAACAGACGAT Contig1748_757_791
Contig3458_875_913 TGAAGCTAGTCCTATGGAATTAACATGTGCTATGCCAGT Contig3458_875_913
Contig182_754_788 GGGTCTTCGTAAAGTTGCTTGTATTGGTCCATGGC Contig182_754_788
Contig2328_621_655 CAATCGCACATTGTGATAATCTCGCGGGATTTTCC Contig2328_621_655
Contig3263_391_425 CACATTTGGGTTATGGAGATAACGGTAGCCCTCCT Contig3263_391_425
Contig3895_597_631 TCAATCGTGCCAAACGTGAAGGTATTCATCGTACA Contig3895_597_631
Contig2011_419_457 CCATAAATCCCAGCGCAAAATCATAGCTACTATCCAAGG Contig2011_419_457
Contig3928_539_573 CCGAATTGGCAATCATTGTTCAATGACGGGCTGCA Contig3928_539_573
Contig250_551_590 GTGCCATCATCTACCAATGAAATTCGACCCGTTTATAAGT Contig250_551_590
Contig4242_377_415 TGTTTATCATTAGCTGAGTGCCATTAGCATGCTACAGAG Contig4242_377_415
Contig4977_296_330 AGTTACGGTAGATGGAGTCAATTGGGCCGGTGTGA Contig4977_296_330
Contig718_542_576 AATCGGGAAGAGATCCTTAGGCGTTCTAGACATCG Contig718_542_576
Contig5395_1011_1045 TGTGACGTTTGAACTCGACATTATTGGCTCGGGAC Contig5395_1011_1045

Total number of rows: 11835

Table truncated, full table size 864 Kbytes.




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Supplementary data files not provided
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