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Platform GPL15383 Query DataSets for GPL15383
Status Public on Mar 29, 2012
Title Agilent-020666 EHEC_EDL933_O157_H7_Antisense
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Escherichia coli
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description EHEC EDL933 O157:H7 from plasmid NC_007414 chromosome NC_002655
Arrays of this design have barcodes that begin with 16020666 or 2520666.
Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.
The ID column represents the Agilent Feature Extraction feature number.
Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).
To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Contributor(s) Wakefield MJ
Submission date Mar 27, 2012
Last update date Mar 29, 2012
Contact name Matthew J Wakefield
E-mail(s) wakefield@wehi.edu.au
Organization name Walter and Eliza Hall Institute
Department Bioinformatics
Street address 1G Royal Parade
City Parkville
State/province VIC
ZIP/Postal code 3050
Country Australia
 
Samples (16) GSM906351, GSM906352, GSM906353, GSM906354, GSM906355, GSM906356 
Series (1)
GSE36922 PatE in transcriptional activation of acid-resistance pathways of enterohemorrhagic Escherichia coli strain EDL933

Data table header descriptions
ID
COL Column
ROW Row
NAME Name
SPOT_ID Spot Identifier
CONTROL_TYPE Control type
SEQUENCE Sequence
ORF Open reading frame identifier
GENE_SYMBOL Gene Symbol
DESCRIPTION Description
RANGE_GB GenBank Accession of gene feature to which probe was designed
START start position
END end position
STRAND Strand relative to genome/plasmid reference

Data table
ID COL ROW NAME SPOT_ID CONTROL_TYPE SEQUENCE ORF GENE_SYMBOL DESCRIPTION RANGE_GB START END STRAND
1 96 164 GE_BrightCorner GE_BrightCorner pos
2 96 162 DarkCorner DarkCorner pos
3 96 160 DarkCorner DarkCorner pos
4 96 158 CUST_76_PI392072398 CUST_76_PI392072398 FALSE GAGAGACTCGAACTCCCAACACCCGGTTTTGGAGACCGGTGCTCTACCAATTGAACTAC Z5274 trpT undefined_product NC_002655.1 4809382 4809457 +
5 96 156 CUST_4377_PI392072392 CUST_4377_PI392072392 FALSE CATTGGTGATTACATTCTGATCGTTAATATTCACTTCGCAGCGCATGTGGCCTTCAATGC Z1390 hyaB undefined_product NC_002655.1 1297191 1298984 +
6 96 154 CUST_1518_PI392072392 CUST_1518_PI392072392 FALSE GCATTAACAGGTTATCACGAGTGATACCGGCATTATTGACCAGGATATCCACTTCACCAA Z1732 fabG undefined_product NC_002655.1 1594851 1595585 +
7 96 152 CUST_1284_PI392072392 CUST_1284_PI392072392 FALSE GCGTAATGACAAAGTCGCGAGAGTAGCGATTAAGAACGCTTTCATCATAGTAACCTTCGT Z3977 nrdE undefined_product NC_002655.1 3592788 3594932 +
8 96 150 CUST_4493_PI392072392 CUST_4493_PI392072392 FALSE CCCAGCGCGATACCACCCTTTCTGGCACCATAAAACAGACATATCAGTATTATGATAAGT Z5725 dcuB undefined_product NC_002655.1 5231839 5233179 -
9 96 148 CUST_2207_PI392072392 CUST_2207_PI392072392 FALSE CAATATTGCAGATACAGACACAGGAAATGAATATCGCGCGATTCAAAGCGTTTTTGCAGC Z3804 csiE undefined_product NC_002655.1 3455773 3457053 +
10 96 146 CUST_63_PI392072398 CUST_63_PI392072398 FALSE GGTGATAGAGGATTCGAACCTCCGACCCCTTCGTCCCGAACGAAGTG Z4963 proK undefined_product NC_002655.1 4517666 4517742 -
11 96 144 CUST_11_PI392072398 CUST_11_PI392072398 FALSE CCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATG Z3995 argY undefined_product NC_002655.1 3609550 3609626 -
12 96 142 CUST_2280_PI392072392 CUST_2280_PI392072392 FALSE GTCCCTTTCTCTTCGGCACGTTCCAGAATATAGGTCGCGTAGATAAACTCGGTATCAAAC Z4292 gshB undefined_product NC_002655.1 3900685 3901632 +
13 96 140 CUST_7478_PI392072392 CUST_7478_PI392072392 FALSE TTTCTTCAGGTTGATAGCGAATTTCGCTGCTTTACCTTTCAGGTTTTCTGCGTGGTATTC Z0541 tig undefined_product NC_002655.1 521188 522486 +
14 96 138 CUST_84_PI392072398 CUST_84_PI392072398 FALSE GTTGTACTGGATTCGAACCAGTGACCGATTGCTTAGAAGGCAATTGCTCTGTCC Z2062 Z2062 undefined_product NC_002655.1 1866038 1866114 +
15 96 136 CUST_5240_PI392072392 CUST_5240_PI392072392 FALSE GGTAACTCCAGAGCAAATCTTCCGCCAGAGAATTATCCATTAGTCGGAACAGTTCGTATT Z1265 Z1265 undefined_product NC_002655.1 1190617 1191510 +
16 96 134 CUST_8875_PI392072392 CUST_8875_PI392072392 FALSE CAGACTCAATCACCAGTTTGTTAGTTTCGGCATGAACAGTTGTGCTCAATGCCAGTG Z2570 Z2570 undefined_product NC_002655.1 2330896 2331237 +
17 96 132 CUST_9820_PI392072392 CUST_9820_PI392072392 FALSE CTTTGCTGAGATTTTCAATCCAGATTTTAGTGGTGATGTAGAGTTCATGACGTGGCACGC Z0229 dkgB undefined_product NC_002655.1 232497 233300 +
18 96 130 CUST_442_PI392072392 CUST_442_PI392072392 FALSE AATTATGTTTGAGGACGAAAGGCGGATTTTTTTGTTGCTGGTGCCAAATACTACTCACCT Z0140 yadI undefined_product NC_002655.1 148950 149390 +
19 96 128 CUST_83_PI392072398 CUST_83_PI392072398 FALSE GAAGGGAATCGAACCCTCGTATAGAGCTTGGGAAGCTCTCGTTCTACCATTGAACTAC Z4202 glyU undefined_product NC_002655.1 3804619 3804692 -
20 96 126 CUST_6087_PI392072392 CUST_6087_PI392072392 FALSE GTTCACTTTCACTATCATGCCGTCAGTAATAATGCCCTGCTCAATCAGTTGTTCTGCTTT Z5517 argB undefined_product NC_002655.1 5031419 5032192 +

Total number of rows: 15744

Table truncated, full table size 2683 Kbytes.




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