|
| Status |
Public on Mar 30, 2012 |
| Title |
PatE in transcriptional activation of acid-resistance pathways of enterohemorrhagic Escherichia coli strain EDL933 |
| Platform organism |
Escherichia coli |
| Sample organism |
Escherichia coli O157:H7 str. EDL933 |
| Experiment type |
Expression profiling by array
|
| Summary |
An experiment to identify the downstream targets of PatE, a prophage encoded AraC-like transcriptional regulator, in transcriptional activation of acid-resistance pathways of enterohemorrhagic Escherichia coli strain EDL933 using deletion and complementation strains (Delta3 and Delta3_1, respectively).
|
| |
|
| Overall design |
Incomplete 2 factor with dye swaps. Genotype: 3 levels (wt, detla3, delta3_1) Bicarbonate: 2 levels (pos, neg) on wt only. 4 biological replicates, 2 in each dye orientation.
Microarrays processed at Australian Genome Research Facility.
|
| |
|
| Contributor(s) |
Wakefield MJ, Bender JK, Tauschek M, Robins-Browne RM |
| Citation(s) |
22582067 |
| |
| Submission date |
Mar 29, 2012 |
| Last update date |
Sep 05, 2012 |
| Contact name |
Matthew J Wakefield |
| E-mail(s) |
wakefield@wehi.edu.au
|
| Organization name |
Walter and Eliza Hall Institute
|
| Department |
Bioinformatics
|
| Street address |
1G Royal Parade
|
| City |
Parkville |
| State/province |
VIC |
| ZIP/Postal code |
3050 |
| Country |
Australia |
| |
|
| Platforms (1) |
| GPL15383 |
Agilent-020666 EHEC_EDL933_O157_H7_Antisense |
|
| Samples (16)
|
|
| Relations |
| BioProject |
PRJNA157307 |
Less...
More...