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Platform GPL15746 Query DataSets for GPL15746
Status Public on Jun 27, 2012
Title NimbleGen Human CGH 4.2M Whole-Genome Tiling Array v1.0 array [100710_HG19_WG_CGH_v1.0_UX1]
Technology type in situ oligonucleotide
Distribution commercial
Organism Homo sapiens
Manufacturer NimbleGen
Manufacture protocol see manufacturer's web site www.nimblegen.com
 
Description Annotation in this record based on hg19.
Design name: 100710_HG19_WG_CGH_PERF_01
Design name: 100710_HG19_WG_CGH_PERF_02
Design name: 100710_HG19_WG_CGH_PERF_03
Design id: 538913
 
Submission date Jun 27, 2012
Last update date Jun 27, 2012
Organization NimbleGen Systems, Inc.
E-mail(s) geo@ncbi.nlm.nih.gov
Phone 608-218-7600
URL http://www.nimblegen.com/
Street address 504 S. Rosa Road
City Madison
State/province WI
ZIP/Postal code 53719
Country USA
 
Samples (16) GSM958858, GSM958859, GSM958860, GSM2065407, GSM2065408, GSM2065409 
Series (5)
GSE39257 Genomic copy-number analysis in Alveolar capillary dysplasia (ACD) patient samples
GSE39258 Small non-coding differentially-methylated copy-number variants, involving lncRNAs, cause a lethal lung developmental disorder
GSE78043 Mapping of nucleolus-associated chromosomal domains during replicative senescence.

Data table header descriptions
ID PROBE_ID from .pos file
SEQ_ID
CHROMOSOME
RANGE_GB CHROMOSOME ACCESSION.VERSION
RANGE_START POSITION. Probe start position (relative to the RANGE_GB)
LENGTH
RANGE_END POSITION. Probe end position (relative to the RANGE_GB)
SEQUENCE probe sequence

Data table
ID SEQ_ID CHROMOSOME RANGE_GB RANGE_START LENGTH RANGE_END SEQUENCE
CHR01FS000759822 chr1:1-249250621 chr1 NC_000001.10 759822 57 759878 TTAAAGTAGTAGATGTACTTTACGTGGTACATAAGAGTATCTATACAGTTTGTGGGC
CHR01FS000760898 chr1:1-249250621 chr1 NC_000001.10 760898 50 760947 TTCAGGACAATAAACGTCTACATGGAGACCAACAGGTGAGTTTTTCTGCC
CHR01FS000767570 chr1:1-249250621 chr1 NC_000001.10 767570 50 767619 AAAGTGGTTCCAAAACGACAAGCATCCTGTAAAGTCGGAAGAGCTGTGTC
CHR01FS000772299 chr1:1-249250621 chr1 NC_000001.10 772299 50 772348 AGTCTTCTTGAGTATAGTCTCCTCGTCATGTCTGCCGCTTCTTCCTGAGT
CHR01FS000776542 chr1:1-249250621 chr1 NC_000001.10 776542 57 776598 AGTAAAAACGATGTCTCTTATTTTGGTCCACATTGTAGGAATCTCACCAGTGACACG
CHR01FS000776566 chr1:1-249250621 chr1 NC_000001.10 776566 50 776615 GGTCCACATTGTAGGAATCTCACCAGTGACACGCGTTTGTGAAAAGCTGT
CHR01FS000780919 chr1:1-249250621 chr1 NC_000001.10 780919 50 780968 CTGTTCGGCATGGATCAAATTGCCTACAAGGTGGAACAGATTTCAACTGC
CHR01FS000783999 chr1:1-249250621 chr1 NC_000001.10 783999 50 784048 CTGAACTACATGTTGGTCCCTCAGATAAGGATTTCTCGAGTCTCAGGTCT
CHR01FS000784347 chr1:1-249250621 chr1 NC_000001.10 784347 50 784396 ACATATAGTTCAAGACGGAAGGGCCTACACTGAAGCAGAAAGGATTGAGG
CHR01FS000784375 chr1:1-249250621 chr1 NC_000001.10 784375 50 784424 ACTGAAGCAGAAAGGATTGAGGTTTATCAGCATCTTCGCTTTGAGGCCTC
CHR01FS000784721 chr1:1-249250621 chr1 NC_000001.10 784721 50 784770 ATTCTACAACGTGCTATTGTGAAGCCATCCGGGACTGTTCACTCACTCAT
CHR01FS000790022 chr1:1-249250621 chr1 NC_000001.10 790022 50 790071 AAACGTCTTACCACGGAATTCCACAGCGTACCAAGCGATTCCACAGCTTG
CHR01FS000795000 chr1:1-249250621 chr1 NC_000001.10 795000 60 795059 ACTAAAATTCCTACATCGAAAGGTCAATGTGTATCACGGCTCTTGATTGACATATTGATT
CHR01FS000800071 chr1:1-249250621 chr1 NC_000001.10 800071 50 800120 GGCTATTTCTGACGTTCATTCAGAATGCCACCTAACTAGGCCAGTTTTTG
CHR01FS000805591 chr1:1-249250621 chr1 NC_000001.10 805591 50 805640 AGGTCTTAGTTGACGCGCTGTTCAGCGCTTTGAGTTCGGCTGAGTTTTGG
CHR01FS000814932 chr1:1-249250621 chr1 NC_000001.10 814932 57 814988 GTCTCTATGCTGGTACAACATTGCTTCGGGTACTGAAGCATTACAGTAAGTATGAAA
CHR01FS000821462 chr1:1-249250621 chr1 NC_000001.10 821462 50 821511 TCCTCTGGGAGTACTATCCAAGTGGGTACCGACTTGACGTCAGCTGGAAC
CHR01FS000835096 chr1:1-249250621 chr1 NC_000001.10 835096 50 835145 AAAAATCAGAAGATGTTTAGCACAACAGCGTGGCATCGTCAGCTGTACTC
CHR01FS000835816 chr1:1-249250621 chr1 NC_000001.10 835816 50 835865 TGGTGGAGTGAAGACGGACCAGGGTTAACATCGGCAGTGATCACTTGACC
CHR01FS000836196 chr1:1-249250621 chr1 NC_000001.10 836196 50 836245 AAGTGCCACGCTAATGTAACACGTTAGTACCAGCGTAACTGGGTGCCAGG

Total number of rows: 4200002

Table truncated, full table size 533044 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL15746_100710_HG19_WG_CGH_v1.0_UX1.gcstats.txt.gz 38.9 Mb (ftp)(http) TXT
GPL15746_100710_HG19_WG_CGH_v1.0_UX1.ncd.gz 267 b (ftp)(http) NCD
GPL15746_100710_HG19_WG_CGH_v1.0_UX1.ndf.gz 238.6 Mb (ftp)(http) NDF
GPL15746_100710_HG19_WG_CGH_v1.0_UX1.pos.gz 30.5 Mb (ftp)(http) POS
GPL15746_100710_HG19_WG_CGH_v1.0_UX1_probe_locations.gff.gz 30.8 Mb (ftp)(http) GFF

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