|
| Status |
Public on Oct 14, 2016 |
| Title |
mCNV3_Nim |
| Sample type |
genomic |
| |
|
| Channel 1 |
| Source name |
mCNV3
|
| Organism |
Homo sapiens |
| Characteristics |
gender: F
patient relationship: family3-proband
|
| Biomaterial provider |
Coriell Cell Repositories http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA10851
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
DNA was isolated from peripheral blood with a Puregene kit (Gentra Systems), following the manufacturer’s protocol.
|
| Label |
Cy3
|
| Label protocol |
The standard manufacture's recommended protocol was used.
|
| |
|
| Channel 2 |
| Source name |
NA10851
|
| Organism |
Homo sapiens |
| Characteristics |
cell line: NA10851
gender: M
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
DNA was isolated from peripheral blood with a Puregene kit (Gentra Systems), following the manufacturer’s protocol.
|
| Label |
Cy5
|
| Label protocol |
The standard manufacture's recommended protocol was used.
|
| |
|
| |
| Hybridization protocol |
The standard manufacture's recommended protocol was used.
|
| Scan protocol |
The standard manufacture's recommended protocol was used.
|
| Data processing |
The data were processed and normalized using DEVA version 1.1.
Analysis was performed with the default parameters in the "CGH workflow with segmentation and background correction and waviness correction" pipeline provided in the DEVA software.
|
| |
|
| Submission date |
Oct 13, 2016 |
| Last update date |
Oct 14, 2016 |
| Contact name |
Pengfei Liu |
| E-mail(s) |
pengfeil@bcm.edu
|
| Phone |
7137985122
|
| Organization name |
Baylor College of Medicine
|
| Lab |
Pengfei Liu
|
| Street address |
2450 Holcombe Blvd, O270F
|
| City |
Houston |
| State/province |
TX |
| ZIP/Postal code |
77021 |
| Country |
USA |
| |
|
| Platform ID |
GPL15746 |
| Series (2) |
| GSE87909 |
Individuals with excess numbers of germline de novo CNVs [NimbleGen] |
| GSE87915 |
Individuals with excess numbers of germline de novo CNVs |
|
