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Status
Public on Jul 07, 2012
Title
NimbleGen UW-Madison Saccharomyces cerevisiae 380K tiling array [2006-10-12_Ansari_tiling_51mer; gene-level version]
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Saccharomyces cerevisiae Manufacturer
NimbleGen
Manufacture protocol
Standard NimbleGen synthesis procedures
Description
designname=2006-10-12_Ansari_tiling_51mer
Submission date
Jul 07, 2012
Last update date
Jul 07, 2012
Contact name
Suraiya Ruma Haroon
E-mail(s)
haroon@wisc.edu Phone
(608) 265-0863
Organization name
University of Wisconsin - Madison
Department
Genetics
Lab
Gasch
Street address
425 Henry Mall
City
Madison
State/province
WI
ZIP/Postal code
53706
Country
USA
Samples (36)
GSM957587 , GSM957588 , GSM957589 , GSM957590 , GSM957591 , GSM957592
GSM957593 ,
GSM957594 ,
GSM957595 ,
GSM957596 ,
GSM957597 ,
GSM1295998 ,
GSM1295999 ,
GSM1361610 ,
GSM1361611 ,
GSM1361612 ,
GSM1361613 ,
GSM1361614 ,
GSM1361615 ,
GSM1372737 ,
GSM1372738 ,
GSM1372739 ,
GSM1372740 ,
GSM1372741 ,
GSM1372742 ,
GSM1372743 ,
GSM1372744 ,
GSM1486072 ,
GSM1486073 ,
GSM1486074 ,
GSM1486075 ,
GSM1486076 ,
GSM1486077 ,
GSM1486078 ,
GSM1486079 ,
GSM1486080 Series (6)
GSE32196 nup42-delta cells pretreated with NaCl lose the altered gene expression in response to H2O2
GSE53549 NeuCode metabolic labeling reveals a high correlation between mRNA and protein abundance during salt adaptation in S. cerevisiae.
GSE56441 Array competitive genomic hybridization of three Saccharomyces cerevisiae strains vs. DBY8268
GSE56995 Snf1 is involved in the aberrant cell cycle induction in cdc14-3 mutant upon NaCl stress in S. cerevisiae
GSE60613 Coordination and interconnectivity in the inferred stress-activated signaling network from yeast
GSE60700 Modification of C-terminal Domain (CTD) of RPB1 plays a role in transcriptome change upon salt stress
Relations Alternative to
GPL9529
Data table header descriptions ID ORF Locus tag
annotation
Data table ID ORF annotation YHR055C
YHR055C YHR055C ... CUP1-2 response to copper ion copper ion binding cytosol | YHR056C
YPR161C
YPR161C YPR161C ... SGV1 protein amino acid phosphoryla cyclin-dependent protein kise actnucleus | YPR162C
YOL138C
YOL138C YOL138C Ö RTC1 biological process unknown molecular function unknown | Protein of unknown function; may interact with ribosomes, based on co-purification experiments; null mutation suppresses cdc13-1 temperature sensitivityYOL139C
YDR395W
YDR395W YDR395W ... SXM1 mR-nucleus export* protein carrier activity nucleus | YDR396W
YGR129W
YGR129W YGR129W ... SYF2 nuclear mR splicing, via spl R splicing factor activity, transspliceosome complex | YGR130C
YPR165W
YPR165W YPR165W ... RHO1 cell wall organization and bio GTPase activity* mitochondrion* | YPR166C
YAL069W
YAL069W YAL069W ... | YAR002C-A
YPR098C
YPR098C YPR098C iESR cluster YPR098C biological process unknown molecular function unknown mitochondrion | YPR099C
YPL015C
YPL015C YPL015C ... HST2 chromatin silencing at telomer D-dependent histone deacetylase acytoplasm | YPL016W
YCL050C
YCL050C YCL050C ... APA1 nucleotide metabolism bis(5'-nucleosyl)-tetraphosphatase cytoplasm* | YCL051W
YLR031W
YLR031W YLR031W ... YLR031W biological process unknown molecular function unknown cellular component unknown | YLR032W
YMR193W
YMR193W YMR193W ... MRPL24 protein biosynthesis structural constituent of ribosome mitochondrial large ribosomal subun | YMR194C-A
YIL014C-A
YIL014C-A YIL014C-A ... YIL014C-A biological process unknown molecular function unknown cellular component unknown | YIL014W
YGR053C
YGR053C YGR053C ... YGR053C biological process unknown molecular function unknown cellular component unknown | YGR054W
snR35
snR35 snR35
YCR101C
YCR101C YCR101C ... YCR101C biological process unknown molecular function unknown membrane fraction | YCR102C
YER087C-B
YER087C-B YER087C-B ... SBH1 SRP-dependent cotranslatiol protein transporter activity* translocon complex* | YER087W
YOR280C
YOR280C YOR280C ... FSH3 biological process unknown* serine hydrolase activity cellular component unknown | YOR281C
YGR097W
YGR097W YGR097W ... ASK10 response to oxidative stress* transcription regulator activity cytoplasm* | YGR098C
YHR215W
YHR215W YHR215W ... PHO12 biological process unknown acid phosphatase activity vacuole (sensu Fungi) | YHR216W
6879 1007 Kbytes .Supplementary file Size Download File type/resource GPL15778_2006-10-12_Ansari_tiling_51mer.ndf.gz
16.0 Mb
(ftp) (http) NDF
GPL15778_ScerProbeMapping.ngd.gz
963.5 Kb
(ftp) (http) NGD
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