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Status
Public on Aug 15, 2012
Title
Agilent-026636 Prueba Lp IFI 021109
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Lactiplantibacillus plantarum WCFS1
Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Description
Genoma Total Lp WCFS1 Arrays of this design have barcodes that begin with 16026636 or 2526636. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
Submission date
Aug 14, 2012
Last update date
Aug 15, 2012
Contact name
GEO admin
E-mail(s)
geo@ncbi.nlm.nih.gov
Organization name
NCBI/NLM/NIH
Street address
9000 Rockville Pike
City
Bethesda
State/province
MD
ZIP/Postal code
20892
Country
USA
Samples (12)
GSM986042 , GSM986043 , GSM986044 , GSM1372763 , GSM1372764 , GSM1372765
Series (4)
GSE40126
Transcriptional profile Lactobacillus plantarum WCFS1 : p-coumaric acid (p-CA) treated cells
GSE56997
Transcriptional profile Lactobacillus plantarum WCFS1: 15 mM gallic acid (GA) treated cells
GSE63728
Transcriptional profile Lactobacillus plantarum WCFS1 : 1.5mM gallic acid (GA) treated cells
GSE89534
Transcriptional profile Lactobacillus plantarum WCFS1 : olive oil (OO) treated cells
Data table header descriptions
ID
COL
ROW
NAME
ORF
CONTROL_TYPE
CHROMOSOMAL_LOCATION
SEQUENCE
SPOT_ID
SPOT_ID
ORDER
Data table
ID
COL
ROW
NAME
ORF
CONTROL_TYPE
CHROMOSOMAL_LOCATION
SEQUENCE
SPOT_ID
SPOT_ID
ORDER
1
96
164
GE_BrightCorner
pos
CONTROL
1
2
96
162
DarkCorner
pos
CONTROL
2
3
96
160
DarkCorner
pos
CONTROL
3
4
96
158
AG1lp_0272#3
lp_0272
FALSE
unmapped
CCAAGCGGATTCAGCGTTATCTAGCTGGAAGCTGTACAATTACTGCGGGAATTCATGTCA
4
5
96
156
AG1lp_0081#1
lp_0081
FALSE
unmapped
GAAGATTCTGACTTCATTAATCGGGCCCTTAAGAACACGCTCAAGCCTAGTCAGGTCGAT
5
6
96
154
AG1lp_2759#2
lp_2759
FALSE
unmapped
TAACTTCTGAGAAGACGATTTCTCCGCGAACTGAAGCAGTTCTCAAACAGCTGCATTCGG
6
7
96
152
AG3lp_0670#3
lp_0670
FALSE
unmapped
ACGGATATTGGTACAAGCTCCAAGATTGATAATGATAATTCCATTAAACCGCAATTTGGA
7
8
96
150
AG1lp_3271#2
lp_3271
FALSE
unmapped
TTCCGAACAAGTGTGTCATTAATAGTCGTTCGGAAGCCGATACGACCGTAGAATTGGGTG
8
9
96
148
AG1lp_1763#2
lp_1763
FALSE
unmapped
GAACGATGGTCAGCGGGTACGCATAAGATTCGCTTGGTTGACATAAAAGATTGGCTACAA
9
10
96
146
AG3lp_2011#1
lp_2011
FALSE
unmapped
GGTCGATAACCGAGGACATCGTAAACCCGAATCAGAATTAACCGATTTGGACAAAGCCAA
10
11
96
144
AG1lp_1102#1
lp_1102
FALSE
unmapped
TTGGTGGGCCTGATCATTTGGTTAAGTAGTCCTATCAAACCAGCCAGTGTTTCGATGAAC
11
12
96
142
AG1lp_1296#3
lp_1296
FALSE
unmapped
AAGTTGAAGCAACTGGATTACCACACACCTTTATCGACAGTTTCTACGACCAACCGACCT
12
13
96
140
AG1lp_3133#3
lp_3133
FALSE
unmapped
GGAAGAATGATGAGGAGATTAGTTCTGCAAGCGATACTGGCGAAGCAACGACAACTGTAG
13
14
96
138
AG3lp_3479#2
lp_3479
FALSE
unmapped
AAAGGCGCTAATGCGGAAAAATATCGCTGTGATTCAGTGGTACTCTAAGATTCAAGAACA
14
15
96
136
AG1lp_2630#1
lp_2630
FALSE
unmapped
TACTGGAACGCGGCTGTCTAATGTTACTGTCAGAACCACTACTTTTAGGCGATTTAGGCT
15
16
96
134
AG1lp_0706#2
lp_0706
FALSE
unmapped
GTGGATAAGCGTGATTTATACGATAGTTTCGGTGAGATGGAACAACAGATGCAACAAATG
16
17
96
132
AG3lp_3110#1
lp_3110
FALSE
unmapped
AATGCGGACGATCGTCAAGGATTGGCTTTAAATCCGGAAGATATTGCTAACGCGGTATTA
17
18
96
130
AG1lp_1539#3
lp_1539
FALSE
unmapped
CACCCAACAGTCGACGCAAAATAAGGCGACAAGCCAATCAACTAGCAGCCAAAGTAATTC
18
19
96
128
AG1lp_2453#2
lp_2453
FALSE
unmapped
CCGTCCTCTTCCCCGTCCAGCCCTCCCACTCATAAACAAAAATGGTTATCAGACTATTTC
19
20
96
126
AG1lp_1803#1
lp_1803
FALSE
unmapped
CGCATCTGTTAGTGACCCAACGTCGTTTACGGCTTTTAATGATCTTTGACGCGCTCTTTT
20
Total number of rows: 15744 Table truncated, full table size 1743 Kbytes .
Supplementary data files not provided