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Series GSE89534 Query DataSets for GSE89534
Status Public on Jun 12, 2017
Title Transcriptional profile Lactobacillus plantarum WCFS1 : olive oil (OO) treated cells
Platform organism Lactiplantibacillus plantarum WCFS1
Sample organism Lactiplantibacillus plantarum
Experiment type Expression profiling by array
Summary Whole genome transcriptional profiling was used to characterize the response of Lactobacillus plantarum WCFS1 human isolate during challenge with olive oil (OO). Twelve independent experiments were performed and mixed at random in groups of four for total of three RNA samples. The transcriptional profile reveals the downregulation of processes associated with rapid growth and the induction of stress-related pathways indicating the involvement of the stringent response. The fatty acid biosynthetic pathway is thoroughly downregulated at the transcriptional level and genes involved in host-cell signalling are differentially regulated.
 
Overall design Biological triplicates: untreated cells: Control vs. Olive oil treated cells: Experimental
 
Contributor(s) del Mar Esteban-Torres M, Reverón I, Plaza L, de las Rivas B, Muñoz R, López de Felipe F
Citation(s) 28261192
Submission date Nov 04, 2016
Last update date Jun 12, 2017
Contact name Felix Lopez de Felipe
E-mail(s) fxlopez@ictan.csic.es
Organization name ICTAN-CSIC
Street address Jose Antonio Novais
City Madrid
ZIP/Postal code 28040
Country Spain
 
Platforms (1)
GPL15934 Agilent-026636 Prueba Lp IFI 021109
Samples (3)
GSM2375335 Olive oil 10 min replicate 1
GSM2375336 Olive oil 10 min replicate 2
GSM2375337 Olive oil 10 min replicate 3
Relations
BioProject PRJNA352480

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE89534_GEO_Olive_oil_vs_Control_GE_complete_RESULTS_Targets.txt.gz 1.1 Mb (ftp)(http) TXT
GSE89534_RAW.tar 13.4 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table
Processed data are available on Series record

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