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Status
Public on Sep 07, 2012
Title
Agilent-026806 M. mulatta (Rhesus) Oligo Microarray v2 (Feature Number version)
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Macaca mulatta
Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Description
M. mulatta (Rhesus) Oligo Microarray v2 Arrays of this design have barcodes that begin with 16026806 or 2526806. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
Submission date
Sep 07, 2012
Last update date
Jan 18, 2013
Organization
Agilent Technologies
E-mail(s)
cag_sales-na@agilent.com
Phone
877-424-4536
URL
http://www.agilent.com
Department
Street address
City
Palo Alto
State/province
CA
ZIP/Postal code
94304
Country
USA
Samples (175)
GSM1001373 , GSM1001374 , GSM1001375 , GSM1001376 , GSM1001377 , GSM1001378
GSM1001379 ,
GSM1001380 ,
GSM1001381 ,
GSM1001382 ,
GSM1001383 ,
GSM1001384 ,
GSM1001385 ,
GSM1001386 ,
GSM1001387 ,
GSM1001388 ,
GSM1236786 ,
GSM1236787 ,
GSM1236788 ,
GSM1236789 ,
GSM1236790 ,
GSM1236791 ,
GSM1236792 ,
GSM1236793 ,
GSM1236794 ,
GSM1236795 ,
GSM1236796 ,
GSM1236797 ,
GSM1236798 ,
GSM1236799 ,
GSM1236800 ,
GSM1236801 ,
GSM1236802 ,
GSM1236803 ,
GSM1236804 ,
GSM1236805 ,
GSM1236806 ,
GSM1236807 ,
GSM1236808 ,
GSM1236809 ,
GSM1236810 ,
GSM1236811 ,
GSM1236812 ,
GSM1236813 ,
GSM1236814 ,
GSM1236815 ,
GSM1236816 ,
GSM1236817 ,
GSM1236818 ,
GSM1236819 ,
GSM1236820 ,
GSM1236821 ,
GSM1236822 ,
GSM1236823 ,
GSM1236824 ,
GSM1236825 ,
GSM1236826 ,
GSM1236827 ,
GSM1236828 ,
GSM1236829 ,
GSM1236830 ,
GSM1236831 ,
GSM1236832 ,
GSM1236833 ,
GSM1236834 ,
GSM1236835 ,
GSM1236836 ,
GSM1236837 ,
GSM1236838 ,
GSM1236839 ,
GSM1236840 ,
GSM1236841 ,
GSM1236842 ,
GSM1236843 ,
GSM1236844 ,
GSM1236845 ,
GSM1236846 ,
GSM1236847 ,
GSM1236848 ,
GSM1236849 ,
GSM1236850 ,
GSM1236851 ,
GSM1236852 ,
GSM1236853 ,
GSM1236854 ,
GSM1236855 ,
GSM1236856 ,
GSM1236857 ,
GSM1236858 ,
GSM1236859 ,
GSM1236860 ,
GSM1236861 ,
GSM1236862 ,
GSM1236863 ,
GSM1236864 ,
GSM1236865 ,
GSM1236866 ,
GSM1236867 ,
GSM1236868 ,
GSM2589345 ,
GSM2589346 ,
GSM2589347 ,
GSM2589348 ,
GSM2589349 ,
GSM2589350 ,
GSM2589351 ,
GSM2589352 ,
GSM2589353 ,
GSM2589354 ,
GSM2589355 ,
GSM2589356 ,
GSM2589357 ,
GSM2589358 ,
GSM2589359 ,
GSM2589360 ,
GSM2589361 ,
GSM2589362 ,
GSM2589363 ,
GSM2589364 ,
GSM2589365 ,
GSM2589366 ,
GSM2589367 ,
GSM2589368 ,
GSM2589369 ,
GSM2589370 ,
GSM2589371 ,
GSM2589372 ,
GSM2589373 ,
GSM2589374 ,
GSM2589375 ,
GSM2589376 ,
GSM2748156 ,
GSM2748157 ,
GSM2748158 ,
GSM2748159 ,
GSM2748160 ,
GSM2748161 ,
GSM2748162 ,
GSM2748163 ,
GSM2748164 ,
GSM2748165 ,
GSM2748166 ,
GSM2748167 ,
GSM2748168 ,
GSM2748169 ,
GSM2748170 ,
GSM2748171 ,
GSM2748172 ,
GSM2748173 ,
GSM2748174 ,
GSM2748175 ,
GSM2748176 ,
GSM2748177 ,
GSM2748178 ,
GSM2748179 ,
GSM2748180 ,
GSM2748181 ,
GSM2748182 ,
GSM2748183 ,
GSM2748184 ,
GSM2748185 ,
GSM2748186 ,
GSM2748187 ,
GSM2748188 ,
GSM2748189 ,
GSM2748190 ,
GSM2748191 ,
GSM2748192 ,
GSM2748193 ,
GSM2748194 ,
GSM2748195 ,
GSM2748196 ,
GSM2748197 ,
GSM2748198 ,
GSM2748199
Series (4)
GSE40781
CD3/CD28 Stimulated versus unstimulated Double-negative T Cells From Sooty Mangabeys
GSE51061
Transcriptome analysis of non-human primate Chinese and Indian rhesus macaque spectrotype vaccination with Mycobacterium bovis BCG
GSE98211
Immune response genes at the mRNA vaccine delivery sites and draining lymph nodes of rhesus macaques
GSE102909
Peripheral blood transcriptomics following immunization with TLR-adjuvanted nanoparticle vaccine in rhesus macaques
Relations
Alternative to
GPL16027
Data table header descriptions
ID
Agilent feature number
COL
Column
ROW
Row
NAME
NAME
SPOT_ID
Spot identifier
CONTROL_TYPE
Control type
REFSEQ
RefSeqAccession
GB_ACC
GenBank accession
LOCUSLINK_ID
LocuslinkID
GENE_SYMBOL
Gene Symbol
GENE_NAME
Gene Name
UNIGENE_ID
UnigeneID
ENSEMBL_ID
EnsemblID
ACCESSION_STRING
Accession String
CHROMOSOMAL_LOCATION
Chromosomal Location
DESCRIPTION
Description
SEQUENCE
Sequence
Data table
ID
COL
ROW
NAME
SPOT_ID
CONTROL_TYPE
REFSEQ
GB_ACC
LOCUSLINK_ID
GENE_SYMBOL
GENE_NAME
UNIGENE_ID
ENSEMBL_ID
ACCESSION_STRING
CHROMOSOMAL_LOCATION
DESCRIPTION
SEQUENCE
1
266
170
GE_BrightCorner
GE_BrightCorner
pos
2
266
168
DarkCorner
DarkCorner
pos
3
266
166
DarkCorner
DarkCorner
pos
4
266
164
DarkCorner
DarkCorner
pos
5
266
162
DarkCorner
DarkCorner
pos
6
266
160
DarkCorner
DarkCorner
pos
7
266
158
DarkCorner
DarkCorner
pos
8
266
156
DarkCorner
DarkCorner
pos
9
266
154
DarkCorner
DarkCorner
pos
10
266
152
DarkCorner
DarkCorner
pos
11
266
150
DarkCorner
DarkCorner
pos
12
266
148
A_01_P016011
A_01_P016011
FALSE
JU335362
695300
ANKRD10
ankyrin repeat domain 10
Mmu.18520
ENSMMUT00000026614
ens|ENSMMUT00000026614|gb|JU335362|gb|JV065297|gb|JU476315
chr17:90929524-90929465
TSA: Macaca mulatta Mamu_502392 mRNA sequence. [JU335362]
CCTGGGGCTGCGTTCTGATTCACTGTTTTTAATTCCACATTTCCTACTTGGTCTCTGGAA
13
266
146
A_01_P005783
A_01_P005783
FALSE
XM_001097164
XM_001097164
gb|JV044012|gb|JU477198|gb|JU336380|ref|XM_001097164
chr20:4503509-4503450
TSA: Macaca mulatta Mamu_365644 mRNA sequence. [JU477198]
CCCAGGTTTGTAGCCAGGAGAAGGGGGGCATCGCAGAGCTGATGGTCCAATAAGGGGGTG
14
266
144
A_01_P017525
A_01_P017525
FALSE
JV049678
716340
PPIE
peptidylprolyl isomerase E (cyclophilin E)
Mmu.18611
ENSMMUT00000026526
ens|ENSMMUT00000026526|ens|ENSMMUT00000026528|gb|JV049678|gb|JV049677
chr1:42632439-42632498
CCTGGGACTACCAGTGTGGCTCTTAGGTGTTTTCTTTGCTAAAATAAACCCTTGTTCTTA
15
266
142
A_01_P1694333
A_01_P1694333
FALSE
AY680450
641448
SNW1
SNW domain containing 1
Mmu.2023
gb|AY680450
chr7:140889085-140889026
"Macaca mulatta clone dl1_c23_t7_049 SKI-interacting protein (SNW1) mRNA, partial cds. [AY680450]"
GCATTCTCCTAGCCGAAAGATGACTGTAAAGGAACAACAAGAGTGGAAGATTCCTCCTTG
16
266
140
A_01_P1817511
A_01_P1817511
FALSE
XM_001113220
XM_001113220
100425072
LOC100425072
40S ribosomal protein S27-like
Mmu.19735
gb|XM_002800357|gb|CB549597|gb|CK231531|ref|XM_001113220
chr16:27403191-27403134
"PREDICTED: Macaca mulatta 40S ribosomal protein S27-like (LOC100425072), mRNA [XM_002800357]"
CTAAAAGCACTCTGAATCAAGATGAGTGGGAAACCATCTCAATAAACACATTTTGGATTT
17
266
138
A_01_P1718146
A_01_P1718146
FALSE
XR_012948
XR_012948
ENSMMUT00000032850
ens|ENSMMUT00000032850|ref|XR_012948
chr10:69203532-69203473
"PREDICTED: Macaca mulatta nucleophosmin-like (LOC714242), partial miscRNA [XR_012948]"
TCTGAAAAGCGATCTGCTACTGGAGGTGGTAGCAAGGTTCCACAGAAAAAAGTAAAACTT
18
266
136
A_01_P1803706
A_01_P1803706
FALSE
unmapped
AACAGAAAGCAAGAACTCTGGATGGAGATTGTGGGGATTGAGAGAGGAAGTGATGTCACT
19
266
134
A_01_P1769936
A_01_P1769936
FALSE
JV043687
Mmu.9992
ENSMMUT00000044926
gb|JV043687|gb|JU470552|ens|ENSMMUT00000044926|gb|XM_002802042
chr1:184394603-184394662
TSA: Macaca mulatta Mamu_361802 mRNA sequence. [JU470552]
ACTGATGGAGAGGTGGAGACTCAGGTATACAACCAGGATTCTCAAGATTCCATTGGAGAA
20
266
132
A_01_P011581
A_01_P011581
FALSE
XM_001095069
XM_001095069
706688
SIVA1
"SIVA1, apoptosis-inducing factor"
Mmu.11423
ENSMMUT00000023254
ens|ENSMMUT00000023254|ens|ENSMMUT00000039438|gb|CO579555|ref|XM_001095069
chr7:168139743-168139802
"ILLUMIGEN_MCQ_49963 Katze_MMIL Macaca mulatta cDNA clone IBIUW:16410 5' similar to Bases 45 to 735 highly similar to human SIVA (Hs.112058), mRNA sequence [CO579555]"
GGCCTTTTACATGTTCTATTTTGTATCCTAATGACAGAATGAATAAACCTCTTTATATTT
Total number of rows: 45220 Table truncated, full table size 12121 Kbytes .
Supplementary file
Size
Download
File type/resource
GPL16026_026806_D_GEO_20120509.txt.gz
3.8 Mb
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TXT