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Platform GPL16026 Query DataSets for GPL16026
Status Public on Sep 07, 2012
Title Agilent-026806 M. mulatta (Rhesus) Oligo Microarray v2 (Feature Number version)
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Macaca mulatta
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description M. mulatta (Rhesus) Oligo Microarray v2

Arrays of this design have barcodes that begin with 16026806 or 2526806.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

 
Submission date Sep 07, 2012
Last update date Jan 18, 2013
Organization Agilent Technologies
E-mail(s) cag_sales-na@agilent.com
Phone 877-424-4536
URL http://www.agilent.com
Department
Street address
City Palo Alto
State/province CA
ZIP/Postal code 94304
Country USA
 
Samples (175) GSM1001373, GSM1001374, GSM1001375, GSM1001376, GSM1001377, GSM1001378 
Series (4)
GSE40781 CD3/CD28 Stimulated versus unstimulated Double-negative T Cells From Sooty Mangabeys
GSE51061 Transcriptome analysis of non-human primate Chinese and Indian rhesus macaque spectrotype vaccination with Mycobacterium bovis BCG
GSE98211 Immune response genes at the mRNA vaccine delivery sites and draining lymph nodes of rhesus macaques
Relations
Alternative to GPL16027

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
NAME NAME
SPOT_ID Spot identifier
CONTROL_TYPE Control type
REFSEQ RefSeqAccession
GB_ACC GenBank accession
LOCUSLINK_ID LocuslinkID
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
UNIGENE_ID UnigeneID
ENSEMBL_ID EnsemblID
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
DESCRIPTION Description
SEQUENCE Sequence

Data table
ID COL ROW NAME SPOT_ID CONTROL_TYPE REFSEQ GB_ACC LOCUSLINK_ID GENE_SYMBOL GENE_NAME UNIGENE_ID ENSEMBL_ID ACCESSION_STRING CHROMOSOMAL_LOCATION DESCRIPTION SEQUENCE
1 266 170 GE_BrightCorner GE_BrightCorner pos
2 266 168 DarkCorner DarkCorner pos
3 266 166 DarkCorner DarkCorner pos
4 266 164 DarkCorner DarkCorner pos
5 266 162 DarkCorner DarkCorner pos
6 266 160 DarkCorner DarkCorner pos
7 266 158 DarkCorner DarkCorner pos
8 266 156 DarkCorner DarkCorner pos
9 266 154 DarkCorner DarkCorner pos
10 266 152 DarkCorner DarkCorner pos
11 266 150 DarkCorner DarkCorner pos
12 266 148 A_01_P016011 A_01_P016011 FALSE JU335362 695300 ANKRD10 ankyrin repeat domain 10 Mmu.18520 ENSMMUT00000026614 ens|ENSMMUT00000026614|gb|JU335362|gb|JV065297|gb|JU476315 chr17:90929524-90929465 TSA: Macaca mulatta Mamu_502392 mRNA sequence. [JU335362] CCTGGGGCTGCGTTCTGATTCACTGTTTTTAATTCCACATTTCCTACTTGGTCTCTGGAA
13 266 146 A_01_P005783 A_01_P005783 FALSE XM_001097164 XM_001097164 gb|JV044012|gb|JU477198|gb|JU336380|ref|XM_001097164 chr20:4503509-4503450 TSA: Macaca mulatta Mamu_365644 mRNA sequence. [JU477198] CCCAGGTTTGTAGCCAGGAGAAGGGGGGCATCGCAGAGCTGATGGTCCAATAAGGGGGTG
14 266 144 A_01_P017525 A_01_P017525 FALSE JV049678 716340 PPIE peptidylprolyl isomerase E (cyclophilin E) Mmu.18611 ENSMMUT00000026526 ens|ENSMMUT00000026526|ens|ENSMMUT00000026528|gb|JV049678|gb|JV049677 chr1:42632439-42632498 CCTGGGACTACCAGTGTGGCTCTTAGGTGTTTTCTTTGCTAAAATAAACCCTTGTTCTTA
15 266 142 A_01_P1694333 A_01_P1694333 FALSE AY680450 641448 SNW1 SNW domain containing 1 Mmu.2023 gb|AY680450 chr7:140889085-140889026 "Macaca mulatta clone dl1_c23_t7_049 SKI-interacting protein (SNW1) mRNA, partial cds. [AY680450]" GCATTCTCCTAGCCGAAAGATGACTGTAAAGGAACAACAAGAGTGGAAGATTCCTCCTTG
16 266 140 A_01_P1817511 A_01_P1817511 FALSE XM_001113220 XM_001113220 100425072 LOC100425072 40S ribosomal protein S27-like Mmu.19735 gb|XM_002800357|gb|CB549597|gb|CK231531|ref|XM_001113220 chr16:27403191-27403134 "PREDICTED: Macaca mulatta 40S ribosomal protein S27-like (LOC100425072), mRNA [XM_002800357]" CTAAAAGCACTCTGAATCAAGATGAGTGGGAAACCATCTCAATAAACACATTTTGGATTT
17 266 138 A_01_P1718146 A_01_P1718146 FALSE XR_012948 XR_012948 ENSMMUT00000032850 ens|ENSMMUT00000032850|ref|XR_012948 chr10:69203532-69203473 "PREDICTED: Macaca mulatta nucleophosmin-like (LOC714242), partial miscRNA [XR_012948]" TCTGAAAAGCGATCTGCTACTGGAGGTGGTAGCAAGGTTCCACAGAAAAAAGTAAAACTT
18 266 136 A_01_P1803706 A_01_P1803706 FALSE unmapped AACAGAAAGCAAGAACTCTGGATGGAGATTGTGGGGATTGAGAGAGGAAGTGATGTCACT
19 266 134 A_01_P1769936 A_01_P1769936 FALSE JV043687 Mmu.9992 ENSMMUT00000044926 gb|JV043687|gb|JU470552|ens|ENSMMUT00000044926|gb|XM_002802042 chr1:184394603-184394662 TSA: Macaca mulatta Mamu_361802 mRNA sequence. [JU470552] ACTGATGGAGAGGTGGAGACTCAGGTATACAACCAGGATTCTCAAGATTCCATTGGAGAA
20 266 132 A_01_P011581 A_01_P011581 FALSE XM_001095069 XM_001095069 706688 SIVA1 "SIVA1, apoptosis-inducing factor" Mmu.11423 ENSMMUT00000023254 ens|ENSMMUT00000023254|ens|ENSMMUT00000039438|gb|CO579555|ref|XM_001095069 chr7:168139743-168139802 "ILLUMIGEN_MCQ_49963 Katze_MMIL Macaca mulatta cDNA clone IBIUW:16410 5' similar to Bases 45 to 735 highly similar to human SIVA (Hs.112058), mRNA sequence [CO579555]" GGCCTTTTACATGTTCTATTTTGTATCCTAATGACAGAATGAATAAACCTCTTTATATTT

Total number of rows: 45220

Table truncated, full table size 12121 Kbytes.




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Supplementary file Size Download File type/resource
GPL16026_026806_D_GEO_20120509.txt.gz 3.8 Mb (ftp)(http) TXT

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