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Platform GPL16103

Query DataSets for GPL16103

Status

Public on Sep 26, 2012

Title

Solanum lycopersicum 385K 4-plex array 4x72K array

Technology type

in situ oligonucleotide

Distribution

custom-commercial

Organism

Solanum lycopersicum

Manufacturer

NimbleGen

Manufacture protocol

High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/.

Description

NimbleGen design name 101115_Czosnek_tomato_expr X4 expression design for Solanum lycopersicum, sequences from customer; used modified tiling procedure: 2 60mer probes selected from the 1500 bases at the 3' end (i0w1501), max_matches=1, for sequences with no match1 probes, allow up to 10 matches; empty features on array filled with randomly generated probes of comparable length and G+C content.
101115_Czosnek_tomato_expr.ndf
101115_Czosnek_tomato_expr.ngd

Submission date

Sep 25, 2012

Last update date

Sep 26, 2012

Contact name

Dagan Sade

Organization name

Hebrew University of Jerusalem

Street address

Hertzel

City

Rehovot

ZIP/Postal code

76100

Country

Israel

Samples (16)

More...

GSM1009010, GSM1009011, GSM1009012, GSM1009013, GSM1009014, GSM1009015

Series (1)

GSE41135

Expression analysis of tomato plants TYLCV resistant, susceptible and resistant line silenced in the hexose transporter (LeHT1) gene before and 7 days after inoculation of tomato with Tomato yellow leaf curl virus (TYLCV).

Data table header descriptions
ID
SPOT_ID	International Tomato Annotation Group (ITAG) ID release 2.3

Data table
ID	SPOT_ID
SL1_00sc00002_2_1_1	Solyc02g094810.1.1
SL1_00sc00002_32_1_1	Solyc00g014800.1.1
SL1_00sc00002_4_1_1	Solyc09g038190.1.1
SL1_00sc00002_53_1_1	Solyc05g015700.1.1
SL1_00sc00002_63_1_1	Solyc12g096510.1.1
SL1_00sc00002_9_1_1	Solyc03g077970.1.1
SL1_00sc00010_1_1_1	Solyc05g005590.2.1
SL1_00sc00010_10_1_1	Solyc08g059780.1.1
SL1_00sc00010_11_1_1	Solyc05g056540.2.1
SL1_00sc00010_12_1_1	Solyc12g014320.1.1
SL1_00sc00010_13_1_1	Solyc09g097820.2.1
SL1_00sc00010_14_1_1	Solyc08g065490.2.1
SL1_00sc00010_15_1_1	Solyc04g076790.2.1
SL1_00sc00010_16_1_1	Solyc09g008470.2.1
SL1_00sc00010_17_1_1	Solyc06g009400.2.1
SL1_00sc00010_18_1_1	Solyc02g076720.2.1
SL1_00sc00010_19_1_1	Solyc02g076720.2.1
SL1_00sc00010_2_1_1	Solyc07g066580.2.1
SL1_00sc00010_20_1_1	Solyc06g054690.2.1
SL1_00sc00010_21_1_1	Solyc05g010100.2.1

Total number of rows: 33809

Table truncated, full table size 1346 Kbytes.

Download family	Format
SOFT formatted family file(s)	SOFT
MINiML formatted family file(s)	MINiML

Supplementary file	Size	Download	File type/resource
GPL16103_101115_Czosnek_tomato_expr.ndf.gz	4.6 Mb	(ftp)(http)	NDF
GPL16103_101115_Czosnek_tomato_expr.ngd.gz	1.0 Mb	(ftp)(http)	NGD
GPL16103_DesignNotes.txt.gz	337 b	(ftp)(http)	TXT