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Status
Public on Dec 22, 2012
Title
Agilent-030587 CCMC CGH plus SNP 180k Microarray
Technology type
in situ oligonucleotide
Distribution
commercial
Organism
Homo sapiens Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Description
CCMC, CGH+SNP, SNP, Cancer, 180k Microarray
Submission date
Nov 01, 2012
Last update date
Dec 22, 2012
Contact name
GEO admin
E-mail(s)
geo@ncbi.nlm.nih.gov Organization name
NCBI/NLM/NIH
Street address
9000 Rockville Pike
City
Bethesda
State/province
MD
ZIP/Postal code
20892
Country
USA
Samples (317)
GSM1029657 , GSM1029658 , GSM1518375 , GSM1518376 , GSM1518377 , GSM1518378
GSM1518379 ,
GSM1518380 ,
GSM1518381 ,
GSM1518382 ,
GSM1518383 ,
GSM1518384 ,
GSM1518385 ,
GSM1518386 ,
GSM1518387 ,
GSM1518388 ,
GSM1518389 ,
GSM1518390 ,
GSM1518391 ,
GSM1518392 ,
GSM1579484 ,
GSM1579485 ,
GSM1579486 ,
GSM1579487 ,
GSM1579488 ,
GSM1579489 ,
GSM2045555 ,
GSM2045556 ,
GSM2045557 ,
GSM2045558 ,
GSM2045559 ,
GSM2045560 ,
GSM2045561 ,
GSM2045562 ,
GSM2063227 ,
GSM2063228 ,
GSM2063229 ,
GSM2063230 ,
GSM2063231 ,
GSM2063232 ,
GSM2063233 ,
GSM2760060 ,
GSM2760061 ,
GSM2760062 ,
GSM2760063 ,
GSM2760064 ,
GSM2760065 ,
GSM2760066 ,
GSM2760067 ,
GSM2760068 ,
GSM2760069 ,
GSM2760070 ,
GSM2760071 ,
GSM2760072 ,
GSM2760073 ,
GSM2760074 ,
GSM2760075 ,
GSM2760076 ,
GSM2760077 ,
GSM2760078 ,
GSM2760079 ,
GSM2760080 ,
GSM2760081 ,
GSM2760082 ,
GSM2760083 ,
GSM2760084 ,
GSM2760085 ,
GSM2760086 ,
GSM2760087 ,
GSM2760088 ,
GSM2760089 ,
GSM2760090 ,
GSM2760091 ,
GSM2760092 ,
GSM2760093 ,
GSM2760094 ,
GSM2760095 ,
GSM2760096 ,
GSM2760097 ,
GSM2760098 ,
GSM2760099 ,
GSM2760100 ,
GSM2760101 ,
GSM2760102 ,
GSM2760103 ,
GSM2760104 ,
GSM2760105 ,
GSM2760106 ,
GSM2760107 ,
GSM2760108 ,
GSM2760109 ,
GSM2760110 ,
GSM2760111 ,
GSM2760112 ,
GSM2760113 ,
GSM2760114 ,
GSM2760115 ,
GSM2760116 ,
GSM2760117 ,
GSM2760118 ,
GSM2760119 ,
GSM2760120 ,
GSM2760121 ,
GSM2760122 ,
GSM2760123 ,
GSM2760124 ,
GSM2760125 ,
GSM2760126 ,
GSM2760127 ,
GSM2760128 ,
GSM2760129 ,
GSM2760130 ,
GSM2760131 ,
GSM2760132 ,
GSM2760133 ,
GSM2760134 ,
GSM2760135 ,
GSM2760136 ,
GSM2760137 ,
GSM2760138 ,
GSM2760139 ,
GSM2760140 ,
GSM2760141 ,
GSM2760142 ,
GSM2760143 ,
GSM2760144 ,
GSM2760145 ,
GSM2760146 ,
GSM2760147 ,
GSM2760148 ,
GSM2760149 ,
GSM2760150 ,
GSM2760151 ,
GSM2760152 ,
GSM2760153 ,
GSM2760154 ,
GSM2760155 ,
GSM2760156 ,
GSM2760157 ,
GSM2760158 ,
GSM2760159 ,
GSM2760160 ,
GSM2760161 ,
GSM2760162 ,
GSM2760163 ,
GSM2760164 ,
GSM2760165 ,
GSM2760166 ,
GSM2760167 ,
GSM2760168 ,
GSM2760169 ,
GSM2760170 ,
GSM2760171 ,
GSM2760172 ,
GSM2760173 ,
GSM2760174 ,
GSM2760175 ,
GSM2760176 ,
GSM2760177 ,
GSM2760178 ,
GSM2760179 ,
GSM2760180 ,
GSM2760181 ,
GSM2760182 ,
GSM2760183 ,
GSM2760184 ,
GSM2760185 ,
GSM2760186 ,
GSM2760187 ,
GSM2760188 ,
GSM2760189 ,
GSM2760190 ,
GSM2760191 ,
GSM2760192 ,
GSM2760193 ,
GSM2760194 ,
GSM2760195 ,
GSM2760196 ,
GSM2760197 ,
GSM2760198 ,
GSM2760199 ,
GSM2760200 ,
GSM2760201 ,
GSM2760202 ,
GSM2760203 ,
GSM2760204 ,
GSM2760205 ,
GSM2760206 ,
GSM2760207 ,
GSM2760208 ,
GSM2760209 ,
GSM2760210 ,
GSM2760211 ,
GSM2760212 ,
GSM2760213 ,
GSM2760214 ,
GSM2760215 ,
GSM2760216 ,
GSM2760217 ,
GSM2760218 ,
GSM2760219 ,
GSM2760220 ,
GSM2760221 ,
GSM2760222 ,
GSM2760223 ,
GSM2760224 ,
GSM2760225 ,
GSM2760226 ,
GSM2760227 ,
GSM2760228 ,
GSM2760229 ,
GSM2760230 ,
GSM3109259 ,
GSM3109260 ,
GSM3109261 ,
GSM4095017 ,
GSM4095021 ,
GSM4095026 ,
GSM4095042 ,
GSM4095044 ,
GSM4095053 ,
GSM4095057 ,
GSM4095061 ,
GSM4095067 ,
GSM4095073 ,
GSM4095075 ,
GSM4095079 ,
GSM4315123 ,
GSM4315124 ,
GSM4315125 ,
GSM4315126 ,
GSM4315127 ,
GSM4315128 ,
GSM4315129 ,
GSM4315130 ,
GSM4315131 ,
GSM4315132 ,
GSM4315133 ,
GSM4315134 ,
GSM4315135 ,
GSM4315136 ,
GSM4315137 ,
GSM4315138 ,
GSM4315139 ,
GSM4315140 ,
GSM4315141 ,
GSM4315142 ,
GSM4315143 ,
GSM4315144 ,
GSM4315145 ,
GSM4315146 ,
GSM4315147 ,
GSM4315148 ,
GSM4315149 ,
GSM4315150 ,
GSM4315151 ,
GSM4315152 ,
GSM4315153 ,
GSM4315154 ,
GSM4315155 ,
GSM4315156 ,
GSM4315157 ,
GSM4315158 ,
GSM4315159 ,
GSM4315160 ,
GSM4315161 ,
GSM4315162 ,
GSM4315163 ,
GSM4315164 ,
GSM4315165 ,
GSM4315166 ,
GSM4315167 ,
GSM4315168 ,
GSM4315169 ,
GSM4315170 ,
GSM4315171 ,
GSM4315172 ,
GSM4315173 ,
GSM4315174 ,
GSM4315175 ,
GSM4315176 ,
GSM4315177 ,
GSM4315178 ,
GSM4315179 ,
GSM4315180 ,
GSM4315181 ,
GSM4315182 ,
GSM4315183 ,
GSM4315184 ,
GSM4769156 ,
GSM4769157 ,
GSM4769158 ,
GSM4769159 ,
GSM4769160 ,
GSM4769161 ,
GSM4769162 ,
GSM4769163 ,
GSM4769164 ,
GSM4769165 ,
GSM4769166 ,
GSM4769167 ,
GSM4769168 ,
GSM4769169 ,
GSM4769170 ,
GSM4769171 ,
GSM4769172 ,
GSM4769173 ,
GSM4769174 ,
GSM4769175 ,
GSM4769176 ,
GSM4769177 ,
GSM4769178 ,
GSM4769179 ,
GSM4769180 ,
GSM4769181 ,
GSM4769182 ,
GSM7664373 Series (14)
GSE41990 Deep Sequencing Identifies IDH1 R132S Mutation in Adult Medulloblastoma (CGH)
GSE62009 Cytogenomic profiling of breast cancer brain metastases reveals potential for repurposing targeted therapeutics
GSE64765 Selective Loss of RB in Resistant EGFR Mutant Lung Adenocarcinomas that Transform to SCLC [CGH]
GSE64766 Selective Loss of RB in Resistant EGFR Mutant Lung Adenocarcinomas that Transform to SCLC
GSE77175 PARP1 expression drives the synergy between trabectedin and PARP1 inhibitors
GSE77975 Genome-wide profiling of copy-number alteration in monoclonal gammopathy of undetermined significance
GSE103306 Normal karyotype CLL show high rate of SF3B1 mutations and genomic arrays aberrations with impact on time to treatment
GSE113577 NOTCH1 gene amplification promotes expansion of Cancer Associated Fibroblast populations in human skin
GSE113578 Dual role of CSL (RBP-Jk) and NOTCH1 in CAF
GSE137959 Copy-Number abberation profiles of glioma patient tissue samples and corresponding xenografted tumor samples as well as cell lines derived there-of
GSE145339 19p loss is significantly enriched in older age neuroblastoma patients and correlates with poor prognosis (Agilent-030587)
GSE145341 19p loss is significantly enriched in older age neuroblastoma patients and correlates with poor prognosis
GSE157515 Array comparative genomic hybridization analysis of metastatic lung tumors
GSE239416 Human SUP-B15 cells: CNV compared to reference genome.
Data table header descriptions ID Agilent feature number
COL Column
ROW Row
NAME CONTROL_TYPE Control type
GB_ACC GenBankAccession
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
ACCESSION_STRING Accession String
SNP_ID CHROMOSOMAL_LOCATION Chromosomal Location
CYTOBAND Cytoband
DESCRIPTION Description
SPOT_ID Spot identifier
Data table ID COL ROW NAME CONTROL_TYPE GB_ACC GENE_SYMBOL GENE_NAME ACCESSION_STRING SNP_ID CHROMOSOMAL_LOCATION CYTOBAND DESCRIPTION SPOT_ID 1
532
340
HsCGHBrightCorner
pos
CONTROL
2
532
338
DarkCorner2
pos
CONTROL
3
532
336
DarkCorner2
pos
CONTROL
4
532
334
DarkCorner2
pos
CONTROL
5
532
332
DarkCorner2
pos
CONTROL
6
532
330
DarkCorner2
pos
CONTROL
7
532
328
DarkCorner2
pos
CONTROL
8
532
326
DarkCorner2
pos
CONTROL
9
532
324
DarkCorner2
pos
CONTROL
10
532
322
DarkCorner2
pos
CONTROL
11
532
320
DarkCorner2
pos
CONTROL
12
532
318
DarkCorner2
pos
CONTROL
13
532
316
DarkCorner2
pos
CONTROL
14
532
314
DarkCorner2
pos
CONTROL
15
532
312
DarkCorner2
pos
CONTROL
16
532
310
DarkCorner2
pos
CONTROL
17
532
308
DarkCorner2
pos
CONTROL
18
532
306
DarkCorner2
pos
CONTROL
19
532
304
DarkCorner2
pos
CONTROL
20
532
302
DarkCorner2
pos
CONTROL
180880 23827 Kbytes .Supplementary data files not provided
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