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Status
Public on Dec 22, 2012
Title
Agilent-030587 CCMC CGH plus SNP 180k Microarray
Technology type
in situ oligonucleotide
Distribution
commercial
Organism
Homo sapiens
Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Description
CCMC, CGH+SNP, SNP, Cancer, 180k Microarray Arrays of this design have barcodes that begin with 16030587 or 2530587. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
Submission date
Nov 01, 2012
Last update date
Dec 22, 2012
Contact name
GEO admin
E-mail(s)
geo@ncbi.nlm.nih.gov
Organization name
NCBI/NLM/NIH
Street address
9000 Rockville Pike
City
Bethesda
State/province
MD
ZIP/Postal code
20892
Country
USA
Samples (317)
GSM1029657 , GSM1029658 , GSM1518375 , GSM1518376 , GSM1518377 , GSM1518378
GSM1518379 ,
GSM1518380 ,
GSM1518381 ,
GSM1518382 ,
GSM1518383 ,
GSM1518384 ,
GSM1518385 ,
GSM1518386 ,
GSM1518387 ,
GSM1518388 ,
GSM1518389 ,
GSM1518390 ,
GSM1518391 ,
GSM1518392 ,
GSM1579484 ,
GSM1579485 ,
GSM1579486 ,
GSM1579487 ,
GSM1579488 ,
GSM1579489 ,
GSM2045555 ,
GSM2045556 ,
GSM2045557 ,
GSM2045558 ,
GSM2045559 ,
GSM2045560 ,
GSM2045561 ,
GSM2045562 ,
GSM2063227 ,
GSM2063228 ,
GSM2063229 ,
GSM2063230 ,
GSM2063231 ,
GSM2063232 ,
GSM2063233 ,
GSM2760060 ,
GSM2760061 ,
GSM2760062 ,
GSM2760063 ,
GSM2760064 ,
GSM2760065 ,
GSM2760066 ,
GSM2760067 ,
GSM2760068 ,
GSM2760069 ,
GSM2760070 ,
GSM2760071 ,
GSM2760072 ,
GSM2760073 ,
GSM2760074 ,
GSM2760075 ,
GSM2760076 ,
GSM2760077 ,
GSM2760078 ,
GSM2760079 ,
GSM2760080 ,
GSM2760081 ,
GSM2760082 ,
GSM2760083 ,
GSM2760084 ,
GSM2760085 ,
GSM2760086 ,
GSM2760087 ,
GSM2760088 ,
GSM2760089 ,
GSM2760090 ,
GSM2760091 ,
GSM2760092 ,
GSM2760093 ,
GSM2760094 ,
GSM2760095 ,
GSM2760096 ,
GSM2760097 ,
GSM2760098 ,
GSM2760099 ,
GSM2760100 ,
GSM2760101 ,
GSM2760102 ,
GSM2760103 ,
GSM2760104 ,
GSM2760105 ,
GSM2760106 ,
GSM2760107 ,
GSM2760108 ,
GSM2760109 ,
GSM2760110 ,
GSM2760111 ,
GSM2760112 ,
GSM2760113 ,
GSM2760114 ,
GSM2760115 ,
GSM2760116 ,
GSM2760117 ,
GSM2760118 ,
GSM2760119 ,
GSM2760120 ,
GSM2760121 ,
GSM2760122 ,
GSM2760123 ,
GSM2760124 ,
GSM2760125 ,
GSM2760126 ,
GSM2760127 ,
GSM2760128 ,
GSM2760129 ,
GSM2760130 ,
GSM2760131 ,
GSM2760132 ,
GSM2760133 ,
GSM2760134 ,
GSM2760135 ,
GSM2760136 ,
GSM2760137 ,
GSM2760138 ,
GSM2760139 ,
GSM2760140 ,
GSM2760141 ,
GSM2760142 ,
GSM2760143 ,
GSM2760144 ,
GSM2760145 ,
GSM2760146 ,
GSM2760147 ,
GSM2760148 ,
GSM2760149 ,
GSM2760150 ,
GSM2760151 ,
GSM2760152 ,
GSM2760153 ,
GSM2760154 ,
GSM2760155 ,
GSM2760156 ,
GSM2760157 ,
GSM2760158 ,
GSM2760159 ,
GSM2760160 ,
GSM2760161 ,
GSM2760162 ,
GSM2760163 ,
GSM2760164 ,
GSM2760165 ,
GSM2760166 ,
GSM2760167 ,
GSM2760168 ,
GSM2760169 ,
GSM2760170 ,
GSM2760171 ,
GSM2760172 ,
GSM2760173 ,
GSM2760174 ,
GSM2760175 ,
GSM2760176 ,
GSM2760177 ,
GSM2760178 ,
GSM2760179 ,
GSM2760180 ,
GSM2760181 ,
GSM2760182 ,
GSM2760183 ,
GSM2760184 ,
GSM2760185 ,
GSM2760186 ,
GSM2760187 ,
GSM2760188 ,
GSM2760189 ,
GSM2760190 ,
GSM2760191 ,
GSM2760192 ,
GSM2760193 ,
GSM2760194 ,
GSM2760195 ,
GSM2760196 ,
GSM2760197 ,
GSM2760198 ,
GSM2760199 ,
GSM2760200 ,
GSM2760201 ,
GSM2760202 ,
GSM2760203 ,
GSM2760204 ,
GSM2760205 ,
GSM2760206 ,
GSM2760207 ,
GSM2760208 ,
GSM2760209 ,
GSM2760210 ,
GSM2760211 ,
GSM2760212 ,
GSM2760213 ,
GSM2760214 ,
GSM2760215 ,
GSM2760216 ,
GSM2760217 ,
GSM2760218 ,
GSM2760219 ,
GSM2760220 ,
GSM2760221 ,
GSM2760222 ,
GSM2760223 ,
GSM2760224 ,
GSM2760225 ,
GSM2760226 ,
GSM2760227 ,
GSM2760228 ,
GSM2760229 ,
GSM2760230 ,
GSM3109259 ,
GSM3109260 ,
GSM3109261 ,
GSM4095017 ,
GSM4095021 ,
GSM4095026 ,
GSM4095042 ,
GSM4095044 ,
GSM4095053 ,
GSM4095057 ,
GSM4095061 ,
GSM4095067 ,
GSM4095073 ,
GSM4095075 ,
GSM4095079 ,
GSM4315123 ,
GSM4315124 ,
GSM4315125 ,
GSM4315126 ,
GSM4315127 ,
GSM4315128 ,
GSM4315129 ,
GSM4315130 ,
GSM4315131 ,
GSM4315132 ,
GSM4315133 ,
GSM4315134 ,
GSM4315135 ,
GSM4315136 ,
GSM4315137 ,
GSM4315138 ,
GSM4315139 ,
GSM4315140 ,
GSM4315141 ,
GSM4315142 ,
GSM4315143 ,
GSM4315144 ,
GSM4315145 ,
GSM4315146 ,
GSM4315147 ,
GSM4315148 ,
GSM4315149 ,
GSM4315150 ,
GSM4315151 ,
GSM4315152 ,
GSM4315153 ,
GSM4315154 ,
GSM4315155 ,
GSM4315156 ,
GSM4315157 ,
GSM4315158 ,
GSM4315159 ,
GSM4315160 ,
GSM4315161 ,
GSM4315162 ,
GSM4315163 ,
GSM4315164 ,
GSM4315165 ,
GSM4315166 ,
GSM4315167 ,
GSM4315168 ,
GSM4315169 ,
GSM4315170 ,
GSM4315171 ,
GSM4315172 ,
GSM4315173 ,
GSM4315174 ,
GSM4315175 ,
GSM4315176 ,
GSM4315177 ,
GSM4315178 ,
GSM4315179 ,
GSM4315180 ,
GSM4315181 ,
GSM4315182 ,
GSM4315183 ,
GSM4315184 ,
GSM4769156 ,
GSM4769157 ,
GSM4769158 ,
GSM4769159 ,
GSM4769160 ,
GSM4769161 ,
GSM4769162 ,
GSM4769163 ,
GSM4769164 ,
GSM4769165 ,
GSM4769166 ,
GSM4769167 ,
GSM4769168 ,
GSM4769169 ,
GSM4769170 ,
GSM4769171 ,
GSM4769172 ,
GSM4769173 ,
GSM4769174 ,
GSM4769175 ,
GSM4769176 ,
GSM4769177 ,
GSM4769178 ,
GSM4769179 ,
GSM4769180 ,
GSM4769181 ,
GSM4769182 ,
GSM7664373
Series (14)
GSE41990
Deep Sequencing Identifies IDH1 R132S Mutation in Adult Medulloblastoma (CGH)
GSE62009
Cytogenomic profiling of breast cancer brain metastases reveals potential for repurposing targeted therapeutics
GSE64765
Selective Loss of RB in Resistant EGFR Mutant Lung Adenocarcinomas that Transform to SCLC [CGH]
GSE64766
Selective Loss of RB in Resistant EGFR Mutant Lung Adenocarcinomas that Transform to SCLC
GSE77175
PARP1 expression drives the synergy between trabectedin and PARP1 inhibitors
GSE77975
Genome-wide profiling of copy-number alteration in monoclonal gammopathy of undetermined significance
GSE103306
Normal karyotype CLL show high rate of SF3B1 mutations and genomic arrays aberrations with impact on time to treatment
GSE113577
NOTCH1 gene amplification promotes expansion of Cancer Associated Fibroblast populations in human skin
GSE113578
Dual role of CSL (RBP-Jk) and NOTCH1 in CAF
GSE137959
Copy-Number abberation profiles of glioma patient tissue samples and corresponding xenografted tumor samples as well as cell lines derived there-of
GSE145339
19p loss is significantly enriched in older age neuroblastoma patients and correlates with poor prognosis (Agilent-030587)
GSE145341
19p loss is significantly enriched in older age neuroblastoma patients and correlates with poor prognosis
GSE157515
Array comparative genomic hybridization analysis of metastatic lung tumors
GSE239416
Human SUP-B15 cells: CNV compared to reference genome.
Data table header descriptions
ID
Agilent feature number
COL
Column
ROW
Row
NAME
CONTROL_TYPE
Control type
GB_ACC
GenBankAccession
GENE_SYMBOL
Gene Symbol
GENE_NAME
Gene Name
ACCESSION_STRING
Accession String
SNP_ID
CHROMOSOMAL_LOCATION
Chromosomal Location
CYTOBAND
Cytoband
DESCRIPTION
Description
SPOT_ID
Spot identifier
Data table
ID
COL
ROW
NAME
CONTROL_TYPE
GB_ACC
GENE_SYMBOL
GENE_NAME
ACCESSION_STRING
SNP_ID
CHROMOSOMAL_LOCATION
CYTOBAND
DESCRIPTION
SPOT_ID
1
532
340
HsCGHBrightCorner
pos
CONTROL
2
532
338
DarkCorner2
pos
CONTROL
3
532
336
DarkCorner2
pos
CONTROL
4
532
334
DarkCorner2
pos
CONTROL
5
532
332
DarkCorner2
pos
CONTROL
6
532
330
DarkCorner2
pos
CONTROL
7
532
328
DarkCorner2
pos
CONTROL
8
532
326
DarkCorner2
pos
CONTROL
9
532
324
DarkCorner2
pos
CONTROL
10
532
322
DarkCorner2
pos
CONTROL
11
532
320
DarkCorner2
pos
CONTROL
12
532
318
DarkCorner2
pos
CONTROL
13
532
316
DarkCorner2
pos
CONTROL
14
532
314
DarkCorner2
pos
CONTROL
15
532
312
DarkCorner2
pos
CONTROL
16
532
310
DarkCorner2
pos
CONTROL
17
532
308
DarkCorner2
pos
CONTROL
18
532
306
DarkCorner2
pos
CONTROL
19
532
304
DarkCorner2
pos
CONTROL
20
532
302
DarkCorner2
pos
CONTROL
Total number of rows: 180880 Table truncated, full table size 23827 Kbytes .
Supplementary data files not provided