NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Platform GPL16487 Query DataSets for GPL16487
Status Public on Mar 01, 2013
Title Agilent-037288 Timecourse_Insect_Virus
Technology type in situ oligonucleotide
Distribution custom-commercial
Organisms Helicoverpa zea; Helicoverpa armigera
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description A custom 8x60,000 SurePrint Agilent expression slide (Agilent, Santa Clara, CA) with probes including probes for 27,400 H. zea sequences that were validated previously (Nguyen et al., 2012. PLOS ONE, 7(5), e36324) and all 134 H. armigera single-capsid nucleopolyhedrovirus (HearNPV) genes (Accession: NC_002654).
Arrays of this design have barcodes that begin with 16037288 or 2537288.
 
Citation(s) 23827436
Submission date Jan 10, 2013
Last update date Nov 15, 2014
Contact name Quan Hoang Nguyen
E-mail(s) quan.nguyen@uq.edu.au
Phone (+61)733463147
Organization name The University of Queensland
Department Australian Institute for Bioengineering and Nanotechnology
Lab Single cell and computational genomics lab
Street address Queensland Bioscience Precinct (Building 80) The University of Queensland. 306 Carmody Road. St
City Brisbane
State/province Queensland
ZIP/Postal code 4067
Country Australia
 
Samples (8) GSM1080213, GSM1080214, GSM1080215, GSM1080216, GSM1080217, GSM1080218 
Series (1)
GSE44184 Genome scale analysis of host-virus mRNA differential expression in Helicoverpa zea insect cells infected by H. armigera baculovirus from early till late infection

Data table header descriptions
ID NAME or REFSEQ where available
SPOT_ID Spot identifier
CONTROL_TYPE Control type
REFSEQ RefSeqAccession
GB_POS GenBankAccession:Position
GENE_SYMBOL Gene Symbol
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
DESCRIPTION Description
SEQUENCE Sequence

Data table
ID SPOT_ID CONTROL_TYPE REFSEQ GB_POS GENE_SYMBOL ACCESSION_STRING CHROMOSOMAL_LOCATION DESCRIPTION SEQUENCE
CUST_100002_PI426244263 CUST_100002_PI426244263 FALSE Sup_REVCOMPLocus_4513_Transcrip unmapped GGTTAGGTTGGTCATTTGAATTTCTCTTGCGTTTTTTCGATGATTCGGTCATATTTACAT
CUST_100004_PI426244263 CUST_100004_PI426244263 FALSE REVCOMPLocus_4514_Transcrip unmapped AACTGTATCGTAATTCTATACCGGTACCATACCCTTATACCTTTACCGTTTTCAGTCCCT
CUST_10000_PI426244263 CUST_10000_PI426244263 FALSE Locus_3419_Transcrip unmapped AGATACAAGTCAATCCCCAGTATGTCAAGAAATCTGTCGGGAGCCACGATGAAGATATAC
CUST_100010_PI426244263 CUST_100010_PI426244263 FALSE Sup_REVCOMPLocus_4516_Transcrip unmapped AACGATGATTTCTTGGTTGTAAAGATGTTTTGCCTTAGTGAATCGCACCCCTGAGCCTTG
CUST_100017_PI426244263 CUST_100017_PI426244263 FALSE Sup_REVCOMPLocus_4518_Transcrip unmapped TCGTCATATCTTCACAACGCCTCTCATTCACTGTAGACTCGGGTTTGTTTGGGTTCACAT
CUST_100019_PI426244263 CUST_100019_PI426244263 FALSE Sup_REVCOMPLocus_4519_Transcrip unmapped TAAAATAATATTATATTGCAAACTGTCAGTCTTTCTGTCTGCATGGCGGGACACTGCTTA
CUST_100030_PI426244263 CUST_100030_PI426244263 FALSE REVCOMPLocus_4524_Transcrip unmapped CGGATTCATTCTGTGTCTCGCTAATTGAGCTAATGAATTTTAGCATATTTTATACGCCAT
CUST_100034_PI426244263 CUST_100034_PI426244263 FALSE REVCOMPLocus_4525_Transcrip unmapped GTTGTTTAACATTATTTTTGTGTAGATTTGCACACCGGTTTTAGCGTGAGAGAGACAAAA
CUST_100038_PI426244263 CUST_100038_PI426244263 FALSE REVCOMPLocus_4526_Transcrip unmapped TGTTTAGATACAAGCGGCTCATGTTTGGCATTTCTTGTGCGCCTGAATTTTTTCAAAAAA
CUST_100039_PI426244263 CUST_100039_PI426244263 FALSE REVCOMPLocus_4527_Transcrip unmapped TATAGTTTGCCATATTTCGGCTATGATGGGAATTTGGTGGCTGATACTCGCGATGGACGA
CUST_100042_PI426244263 CUST_100042_PI426244263 FALSE REVCOMPLocus_4528_Transcrip unmapped AAATAACTTACGATACGCTGACGATACTACGCTTCTTGCCAAATCTAAAGAAGATCTAGA
CUST_100050_PI426244263 CUST_100050_PI426244263 FALSE Sup_REVCOMPLocus_4530_Transcrip unmapped GCCTGTCCGTCTATCAAGGCTGATTGATAATTTCAGCAACTATTGTAATAGTTTAACATT
CUST_100051_PI426244263 CUST_100051_PI426244263 FALSE REVCOMPLocus_4531_Transcrip unmapped GGTCACCAGTTGGACTGTTTTTTGTTGACTCATTGTTTCTGAGTATAGAGGATTTAAATA
CUST_100056_PI426244263 CUST_100056_PI426244263 FALSE REVCOMPLocus_4532_Transcrip unmapped TTACTAACATACTGTGTATGTGGGTGGCTTACGCCGCTGTACGAACTGTGACTGTAAAGT
CUST_100058_PI426244263 CUST_100058_PI426244263 FALSE REVCOMPLocus_4533_Transcrip unmapped CGGACTTTTCCCTGTTCAACAGGACAAAATTTAAAAAGATGGGTATAGTTTTCCTGGTCT
CUST_100060_PI426244263 CUST_100060_PI426244263 FALSE REVCOMPLocus_4534_Transcrip unmapped TGAAATTGTTCGAAATCAGCGATGTCGTGTTACAGGATAAAACTGCTGAAACGGGTGCCC
CUST_100064_PI426244263 CUST_100064_PI426244263 FALSE REVCOMPLocus_4535_Transcrip unmapped TGGTATATGTTGGCAGACAATTGTCAATCTTGGCCTACAATTGTGCATTGCAAAGTGTGG
CUST_100066_PI426244263 CUST_100066_PI426244263 FALSE REVCOMPLocus_4536_Transcrip unmapped TTCCAGAACATCGCTAAGGAGATCTTCGACCTGGAAGAGAACGAGGCGCAGAAGGAGCGG
CUST_10006_PI426244263 CUST_10006_PI426244263 FALSE Locus_3423_Transcrip unmapped ATTCCAATTGGTGCTAAATGTTGGTGCTGCTGCAGCGAAACGGTTACATTCATGGGTGAT
CUST_100071_PI426244263 CUST_100071_PI426244263 FALSE Sup_REVCOMPLocus_4537_Transcrip unmapped AAGTAGTAGCTGGCTTTGGTGGGTCTGTATTCGCTTTTCCAAAAGAAGAGATGCCGAAAG

Total number of rows: 34489

Table truncated, full table size 5061 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL16487_037288_D_GEO_20111103.txt.gz 2.4 Mb (ftp)(http) TXT

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap