NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Platform GPL17168 Query DataSets for GPL17168
Status Public on May 16, 2013
Title Agilent-020016 Thaps-BRTC
Technology type in situ oligonucleotide
Distribution commercial
Organism Thalassiosira pseudonana
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Arrays of this design have barcodes that begin with 16020016 or 2520016.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date May 15, 2013
Last update date May 16, 2013
Contact name Kim Thamatrakoln
E-mail(s) thamat@marine.rutgers.edu
Organization name Rutgers University
Street address 71 Dudley Road
City New Brunswick
State/province New Jersey
ZIP/Postal code 08901
Country USA
 
Samples (8) GSM1142603, GSM1142604, GSM1142605, GSM1142606, GSM1142607, GSM1142608 
Series (1)
GSE46982 Whole-genome expression analysis reveals a role for death-related genes in stress acclimation of the diatom Thalasiossira pseudonana

Data table header descriptions
ID Agilent Probe ID
PROBE NAME
CONTROL_TYPE Control type
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
SEQUENCE Sequence
SPOT_ID

Data table
ID PROBE NAME CONTROL_TYPE ACCESSION_STRING CHROMOSOMAL_LOCATION SEQUENCE SPOT_ID
Thaps3_34739 Thaps3_34739 FALSE e_gw1.6.637.1|jgi|Thaps3|22922|estExt_fgenesh... chr1:205-265 GCTTATTTGCAGAGGATTGAGGCGAAGGTTCAGTTGGATAAGCTAAATGCTCAGGAATAG Thaps3_34739
Thaps3_33984 Thaps3_33984 FALSE e_gw1.4.361.1|jgi|Thaps3|9289|fgenesh1_pg.C_c... chr1:836-896 TAAAAGCTCCTCTTCGGCCCAAGACCAAAGAGATCCTTTCTGAAGAATCAGTGGTGAGTT Thaps3_33984
Thaps3_36835 Thaps3_36835 FALSE e_gw1.12.133.1|jgi|Thaps3|25829|estExt_fgenesh... chr1:704-764 TGTCTCGCAGTGCCAAGGACTTGTTGAATCATTTGTTGGATATTGATAGTCGGAGACGGT Thaps3_36835
Thaps3_10349 Thaps3_10349 FALSE fgenesh1_pg.C_...|jgi|Thaps3|268011|estExt_thaps1... chr1:1449-1509 AAAGAAATTGTTGGGGTTGTCTAAATTGTTAGACGACACTGCTGCTCAAAGAGGAAGCGC Thaps3_10349
Thaps3_9520 Thaps3_9520 FALSE fgenesh1_pg.C_c...|jgi|Thaps3|4038|fgenesh1_pg.C_c... chr1:1480-1540 GTCGTTAGATTTCTGGAATTGAGAGGTGCCAAAGAGATACCACCAGATGACGACAAATAG Thaps3_9520
Thaps3_15142 Thaps3_15142 FALSE gw1.6.263.1|jgi|Thaps3|23514|estExt_fgenesh... chr1:775-835 CGAAAGGTGTTTTTGACAAGCCTGTGGTATTTGCCTTGTGTCATGATGCTGTTTTTGTTG Thaps3_15142
Thaps3_8181 Thaps3_8181 FALSE fgenesh1_pg.C_c...|jgi|Thaps3|23277|estExt_fgenesh... chr1:5693-5753 TCAAATCAGAATCATCTCTAGTGAAGCCAACTGAGATCAACCAACACGATCGACGACCAG Thaps3_8181
Thaps3_264664 Thaps3_264664 FALSE thaps1_ua_kg....|jgi|Thaps3|12078|fgenesh1_pg.C_... chr1:216-276 GAGAGAACATAATGTACATCTCGGCAAAATGCCAACGCTTCTCTTGTTCGTGGATGGAAA Thaps3_264664
Thaps3_22582 Thaps3_22582 FALSE estExt_fgenesh...|jgi|Thaps3|25526|estExt_fgenesh... chr1:1956-2016 GTTCTAGTACAGTGCGATAGAATGCTAAGCATTCCTCAAACGTACAACTTGCTCGCTGCA Thaps3_22582
Thaps3_11338 Thaps3_11338 FALSE fgenesh1_pg.C_...|jgi|Thaps3|29818|estExt_Genewis... chr1:645-705 GAAGACAAAAGAACACGAACATCGAAGAGGGAAGCTGGTACAAAAACAATTTACTACTTG Thaps3_11338
Thaps3_24367 Thaps3_24367 FALSE estExt_fgenesh...|jgi|Thaps3|7876|fgenesh1_pg.C_c... chr1:1951-2011 CCTCGCAAGAAAGAACAAGACGTGGAGGTTGGCAATGAAGAGGATAGAAATGACAATTAA Thaps3_24367
Thaps3_22922 Thaps3_22922 FALSE estExt_fgenesh...|jgi|Thaps3|26136|estExt_fgenesh... chr1:9417-9477 CTGAAACACTGATACGCATCAATCTAAAGGATCATAACTTTTCAAGAACTAAGGTACAGT Thaps3_22922
Thaps3_2755 Thaps3_2755 FALSE fgenesh1_pg.C_c...|jgi|Thaps3|21939|estExt_fgenesh... chr1:1435-1495 GACGAGGACATCAAGCCTGACGATGACTTTGTAAACGATGATTGGGATGAAGACAGTTGA Thaps3_2755
Thaps3_263074 Thaps3_263074 FALSE thaps1_ua_kg....|jgi|Thaps3|5313|fgenesh1_pg.C_c... chr1:598-658 TATTACATCATTGCAGGCATCGTTGGAATAGTCGTCATCATTTGGGTTGTGTCAGGTTTG Thaps3_263074
Thaps3_8036 Thaps3_8036 FALSE fgenesh1_pg.C_c...|jgi|Thaps3|24248|estExt_fgenesh... chr1:808-868 ATTTTAGAGGGGTATGACTCATGGAGTATGAGGTTCTACAATCAAGTGAGGAATCTGTAG Thaps3_8036
Thaps3_262719 Thaps3_262719 FALSE thaps1_ua_kg....|jgi|Thaps3|11915|fgenesh1_pg.C_... chr1:526-586 ATTCAAGTCACTCAAGAAGTCGTCACTAGCGCCGGAAGCGACTTTACATTTGAGCTTAGA Thaps3_262719
Thaps3_3608 Thaps3_3608 FALSE fgenesh1_pg.C_c...|jgi|Thaps3|24665|estExt_fgenesh... chr1:1456-1516 ATTGTGAAGACCTATAGGAGAGCATGCGGAGAGACTGTGGGATCATCGCTTTTTGTTTTC Thaps3_3608
Thaps3_24816 Thaps3_24816 FALSE estExt_fgenesh...|jgi|Thaps3|38153|e_gw1.18.158.1 chr1:1210-1270 ATTCTGCAGTCAATGGGGAGTTGGATGAGTCCATGTCTAACTTAAGTTTGTGATACTACT Thaps3_24816
Thaps3_23540 Thaps3_23540 FALSE estExt_fgenesh...|jgi|Thaps3|25484|estExt_fgenesh... chr1:2145-2205 AGCCTCCGTCTTCCACTCCCCTCTGTAGTATTGTAGTGTAAACAAATGAGTCGTTCTGAA Thaps3_23540
Thaps3_261727 Thaps3_261727 FALSE thaps1_ua_kg....|jgi|Thaps3|7890|fgenesh1_pg.C_c... chr1:750-810 AAATCTCTATCCTGATGCTGATCTTCAAAGCAACTATTGTCGCAACCCAGGAGGTGAAGC Thaps3_261727

Total number of rows: 11331

Table truncated, full table size 1900 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap