GEO help: Mouse over screen elements for information.
Status
Public on Jul 08, 2013
Title
[AraGene-1_0-st] Arabidopsis Gene 1.1 ST Array [CDF: aragene10st_At_TAIRG version 16]
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Arabidopsis thaliana Manufacturer
Affymetrix
Manufacture protocol
This is identical to GPL17416 but a custom cdf environment was used to extract data. The custom CDF file is based on Ensembl genes (from http://brainarray.mbni.med.umich.edu version 16). The custom cdf is linked below as a supplementary file.
Submission date
Jul 08, 2013
Last update date
Jul 08, 2013
Contact name
GEO admin
E-mail(s)
geo@ncbi.nlm.nih.gov Organization name
NCBI/NLM/NIH
Street address
9000 Rockville Pike
City
Bethesda
State/province
MD
ZIP/Postal code
20892
Country
USA
Samples (57)
GSM1181880 , GSM1181881 , GSM1181882 , GSM1181883 , GSM1181884 , GSM1181885
GSM1181886 ,
GSM1181887 ,
GSM1181888 ,
GSM1181889 ,
GSM1181890 ,
GSM1181891 ,
GSM1595788 ,
GSM1595789 ,
GSM1595790 ,
GSM1595791 ,
GSM1595792 ,
GSM1595793 ,
GSM1595794 ,
GSM1595795 ,
GSM1595796 ,
GSM1595797 ,
GSM1595798 ,
GSM1595799 ,
GSM1595800 ,
GSM1595801 ,
GSM1595802 ,
GSM1595803 ,
GSM2442997 ,
GSM2442998 ,
GSM2442999 ,
GSM2443000 ,
GSM2443001 ,
GSM2443002 ,
GSM2443003 ,
GSM2443004 ,
GSM2443005 ,
GSM3897680 ,
GSM3897681 ,
GSM3897682 ,
GSM3897683 ,
GSM3897684 ,
GSM3897685 ,
GSM4090702 ,
GSM4090703 ,
GSM4090704 ,
GSM4090705 ,
GSM4090706 ,
GSM4090707 ,
GSM4090708 ,
GSM4090709 ,
GSM5643798 ,
GSM5643799 ,
GSM5643800 ,
GSM5643801 ,
GSM5643802 ,
GSM5643803 Series (7)
GSE48596 A receptor protein links plant cell wall surveillance with hormone signaling
GSE65414 Identification of drought stress related genes in NatA depleted mutants
GSE93049 Expression data from root of sir1-1 and serat tko Arabidopsis mutants.
GSE132978 Downregulation of N-terminal initiator methionine imprinting by NatB impacts growth and the response to osmotic stress in Arabidopsis
GSE137866 Expression data from Arabidopsis adult and juvenile plants under submergence and control conditions
GSE186324 Disruption of the Nα-acetyltransferase NatB causes sensitivity to reductive stress in Arabidopsis thaliana
GSE186325 NatB impacts growth and the response to osmotic stress in Arabidopsis
Relations Alternative to
GPL17416 (official CDF)
Data table header descriptions ID Description ORF
Data table ID Description ORF AT1G01010_at
"Symbols: ANAC001, NAC001 | NAC domain containing protein 1 | chr1:3631-5899 FORWARD LENGTH=1688"
AT1G01010_at AT1G01020_at
Symbols: ARV1 | Arv1-like protein | chr1:5928-8737 REVERSE LENGTH=1623
AT1G01020_at AT1G01030_at
Symbols: NGA3 | AP2/B3-like transcriptional factor family protein | chr1:11649-13714 REVERSE LENGTH=1905
AT1G01030_at AT1G01040_at
"Symbols: DCL1, CAF, SUS1, SIN1, ASU1, EMB76, EMB60, ATDCL1 | dicer-like 1 | chr1:23146-31227 FORWARD LENGTH=6251"
AT1G01040_at AT1G01046_at
Symbols: MIR838A | MIR838a; miRNA | chr1:28500-28706 FORWARD LENGTH=207
AT1G01046_at AT1G01050_at
"Symbols: AtPPa1, PPa1 | pyrophosphorylase 1 | chr1:31170-33153 REVERSE LENGTH=976"
AT1G01050_at AT1G01060_at
Symbols: LHY | Homeodomain-like superfamily protein | chr1:33967-37871 REVERSE LENGTH=2722
AT1G01060_at AT1G01070_at
Symbols: | nodulin MtN21 /EamA-like transporter family protein | chr1:38752-40927 REVERSE LENGTH=1433
AT1G01070_at AT1G01073_at
Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink). | chr1:44677-44787 FORWARD LENGTH=111
AT1G01073_at AT1G01080_at
Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:45296-47019 REVERSE LENGTH=1319
AT1G01080_at AT1G01090_at
Symbols: PDH-E1 ALPHA | pyruvate dehydrogenase E1 alpha | chr1:47485-49286 REVERSE LENGTH=1627
AT1G01090_at AT1G01100_at
Symbols: | 60S acidic ribosomal protein family | chr1:50075-51199 REVERSE LENGTH=631
AT1G01100_at AT1G01110_at
Symbols: IQD18 | IQ-domain 18 | chr1:52239-54692 FORWARD LENGTH=1782
AT1G01110_at AT1G01115_at
Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink). | chr1:56624-56740 FORWARD LENGTH=117
AT1G01115_at AT1G01120_at
Symbols: KCS1 | 3-ketoacyl-CoA synthase 1 | chr1:57269-59167 REVERSE LENGTH=1899
AT1G01120_at AT1G01130_at
"Symbols: | CONTAINS InterPro DOMAIN/s: CBL-interacting protein kinase (InterPro:IPR020660), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G47170.1); Has 176 Blast hits to 176 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 176; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:61905-63811 REVERSE LENGTH=375"
AT1G01130_at AT1G01140_at
"Symbols: CIPK9, PKS6 | CBL-interacting protein kinase 9 | chr1:64167-67625 REVERSE LENGTH=1694"
AT1G01140_at AT1G01150_at
Symbols: | Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain | chr1:70115-72138 REVERSE LENGTH=1178
AT1G01150_at AT1G01160_at
Symbols: GIF2 | GRF1-interacting factor 2 | chr1:72339-74096 FORWARD LENGTH=1045
AT1G01160_at AT1G01170_at
Symbols: | Protein of unknown function (DUF1138) | chr1:73931-74731 REVERSE LENGTH=503
AT1G01170_at
27827 4425 Kbytes .Supplementary file Size Download File type/resource GPL17417_aragene10st_At_TAIRG.cdf.gz
9.3 Mb
(ftp) (http) CDF
GPL17417_aragene10st_At_TAIRG_desc.txt.gz
888.2 Kb
(ftp) (http) TXT
GPL17417_aragene10st_At_TAIRG_mapping.txt.gz
4.4 Mb
(ftp) (http) TXT
GPL17417_aragene10st_At_TAIRG_probe_tab.txt.gz
8.2 Mb
(ftp) (http) TXT
Less...
More...