GEO help: Mouse over screen elements for information.
Status
Public on Jul 08, 2013
Title
[AraGene-1_0-st] Arabidopsis Gene 1.0 ST Array [transcript (gene) version]
Technology type
in situ oligonucleotide
Distribution
commercial
Organism
Arabidopsis thaliana
Manufacturer
Affymetrix
Manufacture protocol
See manufacturer's web site
Description
#%create_date=Wed May 1 12:43:31 2013 PDT #%chip_type=AraGene-1_0-st-v1 #%lib_set_name=AraGene-1_0-st #%lib_set_version=v1 #%genome-version=tair10 #%genome-version-ucsc=tair10 #%genome-lifted-method=NONE #%genome-lifted_from-version-ucsc=tair10 #%netaffx-annotation-date=2012-09-15 #%netaffx-annotation-netaffx-build=33 #%netaffx-annotation-tabular-data-version=1.1 #%netaffx-annotation-tabular-format-version=1.1 #%netaffx-annotation-data-type=transcript_cluster #%netaffx-annotation-docgen-method=module:affy/annotation_update/builder; exec:create-download-file.pl #%netaffx-annotation-docgen-version=8487 #%netaffx-annotation-url-transcript=www.affymetrix.com/analysis/netaffx/gene/transcript.affx?pk= #%netaffx-annotation-url-mrna=www.affymetrix.com/analysis/netaffx/gene/rna.affx?pk=
Submission date
Jul 08, 2013
Last update date
Feb 21, 2017
Organization
Affymetrix, Inc.
E-mail(s)
geo@ncbi.nlm.nih.gov, support@affymetrix.com
Phone
888-362-2447
URL
http://www.affymetrix.com/index.affx
Street address
City
Santa Clara
State/province
CA
ZIP/Postal code
95051
Country
USA
Samples (697)
GSM1219252 , GSM1219253 , GSM1219254 , GSM1219255 , GSM1219256 , GSM1219257
GSM1219258 ,
GSM1219259 ,
GSM1219260 ,
GSM1219261 ,
GSM1219262 ,
GSM1219263 ,
GSM1219264 ,
GSM1219265 ,
GSM1219266 ,
GSM1219267 ,
GSM1219268 ,
GSM1219269 ,
GSM1219270 ,
GSM1219271 ,
GSM1219272 ,
GSM1219273 ,
GSM1219274 ,
GSM1219275 ,
GSM1219276 ,
GSM1219277 ,
GSM1219278 ,
GSM1219279 ,
GSM1219280 ,
GSM1219281 ,
GSM1219282 ,
GSM1219283 ,
GSM1219284 ,
GSM1219285 ,
GSM1219286 ,
GSM1219287 ,
GSM1219288 ,
GSM1219289 ,
GSM1219290 ,
GSM1219291 ,
GSM1219292 ,
GSM1219293 ,
GSM1219294 ,
GSM1219295 ,
GSM1219296 ,
GSM1219297 ,
GSM1219298 ,
GSM1219299 ,
GSM1219300 ,
GSM1219301 ,
GSM1219302 ,
GSM1219303 ,
GSM1219304 ,
GSM1219305 ,
GSM1219306 ,
GSM1219307 ,
GSM1219308 ,
GSM1219309 ,
GSM1219310 ,
GSM1219311 ,
GSM1219312 ,
GSM1219313 ,
GSM1219314 ,
GSM1219315 ,
GSM1219316 ,
GSM1219317 ,
GSM1219318 ,
GSM1219319 ,
GSM1219320 ,
GSM1219321 ,
GSM1219322 ,
GSM1219323 ,
GSM1312804 ,
GSM1312805 ,
GSM1312806 ,
GSM1312807 ,
GSM1312808 ,
GSM1312809 ,
GSM1312810 ,
GSM1312811 ,
GSM1312812 ,
GSM1312813 ,
GSM1312814 ,
GSM1312815 ,
GSM1312816 ,
GSM1312817 ,
GSM1312818 ,
GSM1312819 ,
GSM1312820 ,
GSM1312821 ,
GSM1336739 ,
GSM1336740 ,
GSM1336741 ,
GSM1336742 ,
GSM1336743 ,
GSM1336744 ,
GSM1370415 ,
GSM1370416 ,
GSM1370417 ,
GSM1370418 ,
GSM1370419 ,
GSM1370420 ,
GSM1370421 ,
GSM1370422 ,
GSM1370423 ,
GSM1370424 ,
GSM1370425 ,
GSM1370426 ,
GSM1370427 ,
GSM1370428 ,
GSM1370429 ,
GSM1370430 ,
GSM1370431 ,
GSM1370432 ,
GSM1372952 ,
GSM1372953 ,
GSM1372954 ,
GSM1372955 ,
GSM1372956 ,
GSM1372957 ,
GSM1395216 ,
GSM1395217 ,
GSM1395218 ,
GSM1395219 ,
GSM1395220 ,
GSM1395221 ,
GSM1395222 ,
GSM1395223 ,
GSM1395224 ,
GSM1439456 ,
GSM1439457 ,
GSM1439458 ,
GSM1439459 ,
GSM1439460 ,
GSM1439461 ,
GSM1439462 ,
GSM1439463 ,
GSM1439464 ,
GSM1439465 ,
GSM1439466 ,
GSM1439467 ,
GSM1520876 ,
GSM1520877 ,
GSM1520878 ,
GSM1520879 ,
GSM1520880 ,
GSM1520881 ,
GSM1537791 ,
GSM1537792 ,
GSM1537793 ,
GSM1537794 ,
GSM1537795 ,
GSM1537796 ,
GSM1537797 ,
GSM1537798 ,
GSM1537799 ,
GSM1634415 ,
GSM1634416 ,
GSM1634417 ,
GSM1634418 ,
GSM1634419 ,
GSM1634420 ,
GSM1634421 ,
GSM1634422 ,
GSM1634423 ,
GSM1634424 ,
GSM1634425 ,
GSM1634426 ,
GSM1634427 ,
GSM1634428 ,
GSM1634429 ,
GSM1634430 ,
GSM1634431 ,
GSM1634432 ,
GSM1707656 ,
GSM1707657 ,
GSM1707658 ,
GSM1707659 ,
GSM1707660 ,
GSM1707661 ,
GSM1707662 ,
GSM1707663 ,
GSM1707664 ,
GSM1847091 ,
GSM1847092 ,
GSM1847093 ,
GSM1847094 ,
GSM1847095 ,
GSM1847096 ,
GSM1847097 ,
GSM1847098 ,
GSM1847099 ,
GSM1847100 ,
GSM1856253 ,
GSM1856254 ,
GSM1856255 ,
GSM1856256 ,
GSM1969213 ,
GSM1969214 ,
GSM1969215 ,
GSM1969216 ,
GSM1969217 ,
GSM1969218 ,
GSM1969219 ,
GSM1969220 ,
GSM1969221 ,
GSM2101096 ,
GSM2101097 ,
GSM2101098 ,
GSM2101099 ,
GSM2101100 ,
GSM2101101 ,
GSM2101102 ,
GSM2101103 ,
GSM2101104 ,
GSM2101105 ,
GSM2101106 ,
GSM2101107 ,
GSM2101108 ,
GSM2101109 ,
GSM2101110 ,
GSM2101111 ,
GSM2101112 ,
GSM2101113 ,
GSM2101114 ,
GSM2101115 ,
GSM2101116 ,
GSM2101117 ,
GSM2111284 ,
GSM2111285 ,
GSM2111286 ,
GSM2111287 ,
GSM2111288 ,
GSM2111289 ,
GSM2111290 ,
GSM2111291 ,
GSM2111292 ,
GSM2111293 ,
GSM2111294 ,
GSM2111295 ,
GSM2176257 ,
GSM2176258 ,
GSM2176259 ,
GSM2176260 ,
GSM2176261 ,
GSM2176262 ,
GSM2176263 ,
GSM2176264 ,
GSM2176265 ,
GSM2176266 ,
GSM2176267 ,
GSM2176268 ,
GSM2250103 ,
GSM2250104 ,
GSM2250105 ,
GSM2250106 ,
GSM2250107 ,
GSM2250108 ,
GSM2250109 ,
GSM2250110 ,
GSM2250111 ,
GSM2250112 ,
GSM2250113 ,
GSM2250114 ,
GSM2250115 ,
GSM2250116 ,
GSM2250117 ,
GSM2250118 ,
GSM2250119 ,
GSM2250120 ,
GSM2255705 ,
GSM2255706 ,
GSM2255707 ,
GSM2255708 ,
GSM2255709 ,
GSM2255710 ,
GSM2255711 ,
GSM2255712 ,
GSM2255713 ,
GSM2255714 ,
GSM2255715 ,
GSM2255716 ,
GSM2255717 ,
GSM2255718 ,
GSM2255719 ,
GSM2255720 ,
GSM2255721 ,
GSM2255722 ,
GSM2255723 ,
GSM2255724 ,
GSM2255725 ,
GSM2255726 ,
GSM2310494 ,
GSM2310495 ,
GSM2310496 ,
GSM2310497 ,
GSM2310498 ,
GSM2310499 ,
GSM2310500 ,
GSM2310501 ,
GSM2310502 ,
GSM2310503 ,
GSM2310504 ,
GSM2310505 ,
GSM2310506 ,
GSM2310507 ,
GSM2310508 ,
GSM2310509 ,
GSM2310510 ,
GSM2310511 ,
GSM2310512 ,
GSM2310513 ,
GSM2310514 ,
GSM2356824 ,
GSM2356825 ,
GSM2356826 ,
GSM2356827 ,
GSM2356828 ,
GSM2356829 ,
GSM2356830 ,
GSM2356831 ,
GSM2356832 ,
GSM2397596 ,
GSM2397597 ,
GSM2397598 ,
GSM2397599 ,
GSM2397600 ,
GSM2397601 ,
GSM2397602 ,
GSM2397603 ,
GSM2397604 ,
GSM2415888 ,
GSM2415889 ,
GSM2415890 ,
GSM2415891 ,
GSM2415892 ,
GSM2415893 ,
GSM2415894 ,
GSM2415895 ,
GSM2415896 ,
GSM2415897 ,
GSM2415898 ,
GSM2415899 ,
GSM2415900 ,
GSM2415901 ,
GSM2415902 ,
GSM2415903 ,
GSM2415904 ,
GSM2415905 ,
GSM2415906 ,
GSM2415907 ,
GSM2415908 ,
GSM2415909 ,
GSM2415910 ,
GSM2415911 ,
GSM2433348 ,
GSM2433349 ,
GSM2433350 ,
GSM2433351 ,
GSM2433352 ,
GSM2433353 ,
GSM2433354 ,
GSM2433355 ,
GSM2433356 ,
GSM2433357 ,
GSM2433358 ,
GSM2433359 ,
GSM2433360 ,
GSM2433361 ,
GSM2433362 ,
GSM2433363 ,
GSM2433364 ,
GSM2433365 ,
GSM2471228 ,
GSM2471229 ,
GSM2471230 ,
GSM2642509 ,
GSM2642510 ,
GSM2642511 ,
GSM2642512 ,
GSM2642513 ,
GSM2642514 ,
GSM2642515 ,
GSM2642516 ,
GSM2642517 ,
GSM2776843 ,
GSM2776844 ,
GSM2776845 ,
GSM2776846 ,
GSM2776847 ,
GSM2776848 ,
GSM2776849 ,
GSM2776850 ,
GSM2776851 ,
GSM2860590 ,
GSM2860591 ,
GSM2860592 ,
GSM2860593 ,
GSM2860594 ,
GSM2860595 ,
GSM2860596 ,
GSM2860597 ,
GSM2860598 ,
GSM2860599 ,
GSM2860600 ,
GSM2860601 ,
GSM2860602 ,
GSM2860603 ,
GSM2860604 ,
GSM2860605 ,
GSM2982116 ,
GSM2982117 ,
GSM2982118 ,
GSM2982119 ,
GSM2982120 ,
GSM2982121 ,
GSM2982122 ,
GSM2982123 ,
GSM2982124 ,
GSM2982125 ,
GSM2982126 ,
GSM2982127 ,
GSM2982128 ,
GSM2982129 ,
GSM2982130 ,
GSM2982131 ,
GSM2982132 ,
GSM2982133 ,
GSM3146319 ,
GSM3146320 ,
GSM3146321 ,
GSM3146322 ,
GSM3146323 ,
GSM3146324 ,
GSM3146325 ,
GSM3146326 ,
GSM3146327 ,
GSM3146328 ,
GSM3146329 ,
GSM3146330 ,
GSM3146331 ,
GSM3146332 ,
GSM3146333 ,
GSM3146334 ,
GSM3146335 ,
GSM3146336 ,
GSM3146337 ,
GSM3146338 ,
GSM3146339 ,
GSM3146340 ,
GSM3146341 ,
GSM3146342 ,
GSM3146343 ,
GSM3146344 ,
GSM3146345 ,
GSM3177877 ,
GSM3177878 ,
GSM3177879 ,
GSM3177880 ,
GSM3177881 ,
GSM3177882 ,
GSM3177883 ,
GSM3177884 ,
GSM3177885 ,
GSM3177886 ,
GSM3177887 ,
GSM3177888 ,
GSM3324271 ,
GSM3324272 ,
GSM3324273 ,
GSM3324274 ,
GSM3324275 ,
GSM3324276 ,
GSM3370021 ,
GSM3370022 ,
GSM3370023 ,
GSM3370024 ,
GSM3370025 ,
GSM3370026 ,
GSM3370027 ,
GSM3370028 ,
GSM3370029 ,
GSM3370030 ,
GSM3370031 ,
GSM3370032 ,
GSM3477641 ,
GSM3477642 ,
GSM3477643 ,
GSM3477644 ,
GSM3477645 ,
GSM3477646 ,
GSM3477647 ,
GSM3477648 ,
GSM3477649 ,
GSM3477650 ,
GSM3477651 ,
GSM3477652 ,
GSM3734682 ,
GSM3734683 ,
GSM3734684 ...
Accession list truncated, click here to browse through all related public accessions You can also download a list of all accessions here
Series (56)
GSE50438
Diurnal cycle effect on whole leaf, mesophyll and vasculature: time course
GSE54312
HDG1 transcription factor targets
GSE55436
Genome-wide transcriptome analysis reveals ABA mediated response in Arabidopsis during gold (Aucl4-) treatment
GSE56868
Integration of growth and patterning during vascular tissue formation in Arabidopsis
GSE57013
The Plant-Specific RAB5 GTPase ARA6 is Required for Starch and Sugar Homeostasis in Arabidopsis thaliana
GSE57860
Expression data from Arabidopsis suspension cells overexpressing LHW and T5L1-GFP
GSE59562
Gene expression data of the Arabidopsis thaliana mutant aladin
GSE62167
Expression data from the T-DNA insertion line atpip1;2-1
GSE62993
Expression data of MYB36 mutants
GSE66925
A Comparative Study of Global Transcriptomic Responses under Excess or deficient Phosphate (Pi) Regime reveals ethylene mediated signaling in Arabidopsis.
GSE69700
A Robust Auxin Response Network Controls Embryo and Suspensor Development through a bHLH Transcriptional Module
GSE71875
Expression data from roots of WT and bts-3 plants exposed to either Fe sufficient or Fe deficient conditions for 72 hours
GSE72154
WRKY43 regulates polyunsaturated fatty acid content and abiotic stress tolerance of Arabidopsis seeds
GSE75875
Expression data from Arabidopsis thaliana senescent leaves treated with cytokinins
GSE79681
Global transcriptional analysis reveals unique and shared responses in Arabidopsis thaliana exposed to combined drought and pathogen stress
GSE80026
Comparison between WT and apl in a novel in vitro tissue culture system, VISUAL
GSE80027
Cell-sorting analysis with SEOR1pro::SEOR1-YFP in a novel in vitro tissue culture system, VISUAL
GSE81813
Expression data from Arabidopsis pifq seedlings grown in short days (SD) and in free running (LL) conditions.
GSE84770
Oxidative and Cytokinin Treatment of CRF6
GSE84997
Gene expression profiling of retrograde PAP-signaling and ABA-signaling mutants in response to ABA treatment
GSE86935
Transcript and metabolite profiling indicate rapid regulation of the deacclimation process in cold acclimated Arabidopsis thaliana
GSE88988
Expression data from Arabidopsis seedling
GSE90096
Expression data from Arabidopsis thaliana leaves treated with BrvC
GSE90852
Transcriptomic Analysis of a Pseudomonas-Resistant versus a Susceptible Arabidopsis Accession
GSE92604
Expression data from TOLS2-treated root
GSE94161
Shoot-to-root mobile polypeptides involved in systemic regulation of nitrogen acquisition
GSE99345
Effects of polychlorinated biphenyls (PCBs) and their hydroxylated metabolites (OH-PCBs) on Arabidopsis thaliana.
GSE103623
Expression data of 10-day old ssrp1-2 and spt16-1 mutants in comparison to wild type plants
GSE107074
Expression data from KOBU-induced Arabidopsis
GSE110199
Comparison between WT and bes1 in an in vitro tissue culture system, VISUAL
GSE114638
An essential role for Abscisic acid in the regulation of xylem fibre differentiation
GSE114639
Inhibition of TOR Represses Nutrient Consumption, Which Improves Greening after Extended Periods of Etiolation
GSE115418
Gene expression analysis of Arabidopsis root in LBD16-GR overexpression line
GSE118293
Expression data from Aracidopsis roots
GSE119327
Expression data from Arabidopsis thaliana (Col-0) exposed to Arsenic, Hypoxia and their combination
GSE122667
Lincomycin treatment of Col-0 and gun1-101
GSE130255
Transcriptomic analysis of Arabidopsis wild-type (Col-0), phyb-9, jaz10 and jaz10phyB-9 plants to methyl jasmonate (MeJA)
GSE141037
Comparison among samples subjected to a novel in vitro tissue culture system, VISUAL-CC
GSE144694
Expression data from Arabidopsis seedling during plastid development
GSE149015
Expression data from Arabidopsis plants overexpressing CLE2 in roots
GSE150558
Direct and indirect targets of Arabidopsis ABI3: genome wide binding sites [gene expression]
GSE150561
Direct and indirect targets of Arabidopsis ABI3: genome wide binding sites
GSE159862
Profiling the response of Arabidopsis thaliana to altered gravity environments: Exposure of the 14-3-3κ:GFP overexpression line on the F-104 Starfighter, second flight
GSE159863
Arabidopsis thaliana in altered gravity: the 14-3-3κ:GFP overexpression line on the F-104 Starfighter, first flight
GSE159864
Arabidopsis thaliana in altered gravity: WS in C-9 parabolic flight, 2015
GSE159865
Arabidopsis thaliana in altered gravity: the 14-3-3κ:GFP overexpression line in C-9 parabolic flight, 2013
GSE160649
A type 2C protein phosphatase activates high-affinity nitrate uptake by directly dephosphorylating NRT2.1 in Arabidopsis
GSE166182
A molecular circuit that creates the phloem pattern
GSE171548
Six-hour interval time-course expression data during VISUAL
GSE176064
Expression data from Arabidopsis plants overexpressing CLE3 in roots
GSE195897
Expression data from Arabidopsis suspension cells overexpressing ATHB8-GFP
GSE211805
Retrograde Control of Cytosolic Translation Targets Synthesis of Plastid Proteins and Nuclear Responses for High-Light Acclimation
GSE215830
Expression data from Arabidopsis suspension cells overexpressing VND1-GFP
GSE223240
Expression data from Arabidopsis seedling dark and dark with Rifampicin
GSE223284
The effects of different types of sugars on vascular cell diffentiation in a tissue culture system, VISUAL
GSE228396
Expression profiles of Col-0, adf4 and ADF1-4Ri (in which expressions of all of subclass I ADFs were downregulated) uninfected and Golovinomyces orontii-infected leaves
Relations
Alternative to
GPL17417 (alternative CDF)
Alternative to
GPL21430 (alternative CDF (aragene10st_At_TAIRG version 18))
Alternative to
GPL22603 (alternative CDF [aragene10st_At_TAIRG version 19])
Alternative to
GPL23011 (alternative CDF [aragene10st_At_TAIRG version 20])
Data table header descriptions
ID
seqname
strand
start
stop
total_probes
gene_assignment
mrna_assignment
GB_ACC
GenBank accession number
ORF
SPOT_ID
swissprot
GO_biological_process
GO_cellular_component
GO_molecular_function
protein_domains
crosshyb_type
category
Data table
ID
seqname
strand
start
stop
total_probes
gene_assignment
mrna_assignment
GB_ACC
ORF
SPOT_ID
swissprot
GO_biological_process
GO_cellular_component
GO_molecular_function
protein_domains
crosshyb_type
category
13334158
chr1
+
3631
5899
28
NM_099983 // NAC001 // NAC domain-containing protein 1 // --- // 839580 /// AT1G01010.1 // NAC001 // NAC domain-containing protein 1 // --- // 839580 /// AF439834 // NAC001 // NAC domain-containing protein 1 // --- // 839580
"NM_099983 // RefSeq // Arabidopsis thaliana NAC domain-containing protein 1 (NAC001) mRNA, complete cds. // chr1 // 100 // 100 // 28 // 28 // 0 /// AT1G01010.1 // ENSEMBL // cdna:known chromosome:TAIR10:1:3631:5899:1 gene:AT1G01010 transcript:AT1G01010.1 // chr1 // 100 // 100 // 28 // 28 // 0 /// AF439834 // GenBank // Arabidopsis thaliana At1g01010/T25K16_1 mRNA, complete cds. // chr1 // 100 // 89 // 25 // 25 // 0 /// At1g01010 // The Institute for Genomic Research // 68414.t00001 no apical meristem (NAM) family protein contains Pfam PF02365: No apical meristem (NAM) domain; similar to NAC domain protein NAM GB: AAD17313 GI:4325282 from [Arabidopsis thaliana] // chr1 // 100 // 100 // 28 // 28 // 0"
NM_099983
AT1G01010.1
AF439834 // Q0WV96 /// At1g01010 // Q0WV96
"NM_099983 // GO:0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// NM_099983 // GO:0006888 // ER to Golgi vesicle-mediated transport // inferred from reviewed computational analysis /// NM_099983 // GO:0007275 // multicellular organismal development // inferred from sequence or structural similarity /// NM_099983 // GO:0043090 // amino acid import // inferred from reviewed computational analysis /// AT1G01010.1 // GO:0007275 // multicellular organismal development // inferred from sequence or structural similarity /// AT1G01010.1 // GO:0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// AT1G01010.1 // GO:0006888 // ER to Golgi vesicle-mediated transport // inferred from reviewed computational analysis /// AT1G01010.1 // GO:0043090 // amino acid import // inferred from reviewed computational analysis /// AF439834 // GO:0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// AF439834 // GO:0006888 // ER to Golgi vesicle-mediated transport // inferred from reviewed computational analysis /// AF439834 // GO:0007275 // multicellular organismal development // inferred from sequence or structural similarity /// AF439834 // GO:0043090 // amino acid import // inferred from reviewed computational analysis "
NM_099983 // GO:0005575 // cellular_component // no biological data available /// AT1G01010.1 // GO:0005575 // cellular_component // no biological data available /// AF439834 // GO:0005575 // cellular_component // no biological data available
NM_099983 // GO:0003677 // DNA binding // inferred from electronic annotation /// NM_099983 // GO:0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarity /// AT1G01010.1 // GO:0003677 // DNA binding // inferred from electronic annotation /// AT1G01010.1 // GO:0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarity /// AF439834 // GO:0003677 // DNA binding // inferred from electronic annotation /// AF439834 // GO:0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarity
AT1G01010.1 // Pfam // IPR003441 // No apical meristem (NAM) protein
1
main
13334167
chr1
+
23146
31227
38
NM_099986 // DCL1 // endoribonuclease Dicer // --- // 839574 /// AT1G01040.1 // DCL1 // endoribonuclease Dicer // --- // 839574 /// NM_001197952 // DCL1 // endoribonuclease Dicer // --- // 839574 /// AT1G01040.2 // DCL1 // endoribonuclease Dicer // --- // 839574 /// AF292940 // DCL1 // endoribonuclease Dicer // --- // 839574
"NM_099986 // RefSeq // Arabidopsis thaliana endoribonuclease Dicer (DCL1) mRNA, complete cds. // chr1 // 100 // 100 // 38 // 38 // 0 /// AT1G01040.1 // ENSEMBL // cdna:known chromosome:TAIR10:1:23146:31227:1 gene:AT1G01040 transcript:AT1G01040.1 // chr1 // 100 // 100 // 38 // 38 // 0 /// NM_001197952 // RefSeq // Arabidopsis thaliana endoribonuclease Dicer (DCL1) mRNA, complete cds. // chr1 // 100 // 95 // 36 // 36 // 0 /// AT1G01040.2 // ENSEMBL // cdna:known chromosome:TAIR10:1:23416:31120:1 gene:AT1G01040 transcript:AT1G01040.2 // chr1 // 100 // 95 // 36 // 36 // 0 /// AF292940 // GenBank // Arabidopsis thaliana short integuments 1 (SIN1) mRNA, complete cds. // chr1 // 100 // 100 // 38 // 38 // 0 /// At1g01040 // The Institute for Genomic Research // 68414.t00004 DEAD/DEAH box helicase carpel factory / CAF identical to RNA helicase/RNAseIII CAF protein GB:AAF03534 GI:6102610 from [Arabidopsis thaliana] // chr1 // 100 // 100 // 38 // 38 // 0"
NM_099986
AT1G01040.1
AF292940 // Q9SP32 /// At1g01040 // Q9SP32
NM_099986 // GO:0000226 // microtubule cytoskeleton organization // inferred from reviewed computational analysis /// NM_099986 // GO:0000910 // cytokinesis // inferred from mutant phenotype /// NM_099986 // GO:0000911 // cytokinesis by cell plate formation // inferred from reviewed computational analysis /// NM_099986 // GO:0006306 // DNA methylation // inferred from reviewed computational analysis /// NM_099986 // GO:0006342 // chromatin silencing // inferred from reviewed computational analysis /// NM_099986 // GO:0006396 // RNA processing // inferred from electronic annotation /// NM_099986 // GO:0006396 // RNA processing // inferred from sequence or structural similarity /// NM_099986 // GO:0006396 // RNA processing // inferred from reviewed computational analysis /// NM_099986 // GO:0007267 // cell-cell signaling // inferred from reviewed computational analysis /// NM_099986 // GO:0009616 // virus induced gene silencing // inferred from mutant phenotype /// NM_099986 // GO:0009616 // virus induced gene silencing // inferred from reviewed computational analysis /// NM_099986 // GO:0009630 // gravitropism // inferred from reviewed computational analysis /// NM_099986 // GO:0009880 // embryonic pattern specification // inferred from mutant phenotype /// NM_099986 // GO:0009908 // flower development // traceable author statement /// NM_099986 // GO:0010050 // vegetative phase change // inferred from reviewed computational analysis /// NM_099986 // GO:0010098 // suspensor development // inferred from mutant phenotype /// NM_099986 // GO:0010228 // vegetative to reproductive phase transition of meristem // inferred from mutant phenotype /// NM_099986 // GO:0010267 // production of ta-siRNAs involved in RNA interference // inferred from mutant phenotype /// NM_099986 // GO:0010267 // production of ta-siRNAs involved in RNA interference // inferred from reviewed computational analysis /// NM_099986 // GO:0010599 // production of lsiRNA involved in RNA interference // inferred from mutant phenotype /// NM_099986 // GO:0016569 // covalent chromatin modification // inferred from reviewed computational analysis /// NM_099986 // GO:0022402 // cell cycle process // inferred from reviewed computational analysis /// NM_099986 // GO:0030422 // production of siRNA involved in RNA interference // inferred from mutant phenotype /// NM_099986 // GO:0031047 // gene silencing by RNA // inferred from reviewed computational analysis /// NM_099986 // GO:0031053 // primary miRNA processing // traceable author statement /// NM_099986 // GO:0035196 // production of miRNAs involved in gene silencing by miRNA // inferred from genetic interaction /// NM_099986 // GO:0035196 // production of miRNAs involved in gene silencing by miRNA // inferred from reviewed computational analysis /// NM_099986 // GO:0035279 // mRNA cleavage involved in gene silencing by miRNA // inferred from mutant phenotype /// NM_099986 // GO:0051607 // defense response to virus // inferred from reviewed computational analysis /// NM_099986 // GO:2000034 // regulation of seed maturation // inferred from mutant phenotype /// AT1G01040.1 // GO:0006396 // RNA processing // inferred from sequence or structural similarity /// AT1G01040.1 // GO:0010267 // production of ta-siRNAs involved in RNA interference // inferred from mutant phenotype /// AT1G01040.1 // GO:0035196 // production of miRNAs involved in gene silencing by miRNA // inferred from genetic interaction /// AT1G01040.1 // GO:0035279 // mRNA cleavage involved in gene silencing by miRNA // inferred from mutant phenotype /// AT1G01040.1 // GO:0009908 // flower development // traceable author statement /// AT1G01040.1 // GO:0010228 // vegetative to reproductive phase transition of meristem // inferred from mutant phenotype /// AT1G01040.1 // GO:0030422 // production of siRNA involved in RNA interference // inferred from mutant phenotype /// AT1G01040.1 // GO:0000910 // cytokinesis // inferred from mutant phenotype /// AT1G01040.1 // GO:0010098 // suspensor development // inferred from mutant phenotype /// AT1G01040.1 // GO:0009616 // virus induced gene silencing // inferred from mutant phenotype /// AT1G01040.1 // GO:0010599 // production of lsiRNA involved in RNA interference // inferred from mutant phenotype /// AT1G01040.1 // GO:0009880 // embryonic pattern specification // inferred from mutant phenotype /// AT1G01040.1 // GO:0031053 // primary miRNA processing // traceable author statement /// AT1G01040.1 // GO:0000226 // microtubule cytoskeleton organization // inferred from reviewed computational analysis /// AT1G01040.1 // GO:0000911 // cytokinesis by cell plate formation // inferred from reviewed computational analysis /// AT1G01040.1 // GO:0006306 // DNA methylation // inferred from reviewed computational analysis /// AT1G01040.1 // GO:0006342 // chromatin silencing // inferred from reviewed computational analysis /// AT1G01040.1 // GO:0006396 // RNA processing // inferred from electronic annotation /// AT1G01040.1 // GO:0006396 // RNA processing // inferred from reviewed computational analysis /// AT1G01040.1 // GO:0007267 // cell-cell signaling // inferred from reviewed computational analysis /// AT1G01040.1 // GO:0009616 // virus induced gene silencing // inferred from reviewed computational analysis /// AT1G01040.1 // GO:0009630 // gravitropism // inferred from reviewed computational analysis /// AT1G01040.1 // GO:0010050 // vegetative phase change // inferred from reviewed computational analysis /// AT1G01040.1 // GO:0010267 // production of ta-siRNAs involved in RNA interference // inferred from reviewed computational analysis /// AT1G01040.1 // GO:0016569 // covalent chromatin modification // inferred from reviewed computational analysis /// AT1G01040.1 // GO:0022402 // cell cycle process // inferred from reviewed computational analysis /// AT1G01040.1 // GO:0031047 // gene silencing by RNA // inferred from reviewed computational analysis /// AT1G01040.1 // GO:0035196 // production of miRNAs involved in gene silencing by miRNA // inferred from reviewed computational analysis /// AT1G01040.1 // GO:0051607 // defense response to virus // inferred from reviewed computational analysis /// AT1G01040.1 // GO:2000034 // regulation of seed maturation // inferred from mutant phenotype /// NM_001197952 // GO:0000226 // microtubule cytoskeleton organization // inferred from reviewed computational analysis /// NM_001197952 // GO:0000910 // cytokinesis // inferred from mutant phenotype /// NM_001197952 // GO:0000911 // cytokinesis by cell plate formation // inferred from reviewed computational analysis /// NM_001197952 // GO:0006306 // DNA methylation // inferred from reviewed computational analysis /// NM_001197952 // GO:0006342 // chromatin silencing // inferred from reviewed computational analysis /// NM_001197952 // GO:0006396 // RNA processing // inferred from electronic annotation /// NM_001197952 // GO:0006396 // RNA processing // inferred from sequence or structural similarity /// NM_001197952 // GO:0006396 // RNA processing // inferred from reviewed computational analysis /// NM_001197952 // GO:0007267 // cell-cell signaling // inferred from reviewed computational analysis /// NM_001197952 // GO:0009616 // virus induced gene silencing // inferred from mutant phenotype /// NM_001197952 // GO:0009616 // virus induced gene silencing // inferred from reviewed computational analysis /// NM_001197952 // GO:0009630 // gravitropism // inferred from reviewed computational analysis /// NM_001197952 // GO:0009880 // embryonic pattern specification // inferred from mutant phenotype /// NM_001197952 // GO:0009908 // flower development // traceable author statement /// NM_001197952 // GO:0010050 // vegetative phase change // inferred from reviewed computational analysis /// NM_001197952 // GO:0010098 // suspensor development // inferred from mutant phenotype /// NM_001197952 // GO:0010228 // vegetative to reproductive phase transition of meristem // inferred from mutant phenotype /// NM_001197952 // GO:0010267 // production of ta-siRNAs involved in RNA interference // inferred from mutant phenotype /// NM_001197952 // GO:0010267 // production of ta-siRNAs involved in RNA interference // inferred from reviewed computational analysis /// NM_001197952 // GO:0010599 // production of lsiRNA involved in RNA interference // inferred from mutant phenotype /// NM_001197952 // GO:0016569 // covalent chromatin modification // inferred from reviewed computational analysis /// NM_001197952 // GO:0022402 // cell cycle process // inferred from reviewed computational analysis /// NM_001197952 // GO:0030422 // production of siRNA involved in RNA interference // inferred from mutant phenotype /// NM_001197952 // GO:0031047 // gene silencing by RNA // inferred from reviewed computational analysis /// NM_001197952 // GO:0031053 // primary miRNA processing // traceable author statement /// NM_001197952 // GO:0035196 // production of miRNAs involved in gene silencing by miRNA // inferred from genetic interaction /// NM_001197952 // GO:0035196 // production of miRNAs involved in gene silencing by miRNA // inferred from reviewed computational analysis /// NM_001197952 // GO:0035279 // mRNA cleavage involved in gene silencing by miRNA // inferred from mutant phenotype /// NM_001197952 // GO:0051607 // defense response to virus // inferred from reviewed computational analysis /// NM_001197952 // GO:2000034 // regulation of seed maturation // inferred from mutant phenotype /// AT1G01040.2 // GO:0006396 // RNA processing // inferred from sequence or structural similarity /// AT1G01040.2 // GO:0010267 // production of ta-siRNAs involved in RNA interference // inferred from mutant phenotype /// AT1G01040.2 // GO:0035196 // production of miRNAs involved in gene silencing by miRNA // inferred from genetic interaction /// AT1G01040.2 // GO:0035279 // mRNA cleavage involved in gene silencing by miRNA // inferred from mutant phenotype /// AT1G01040.2 // GO:0009908 // flower development // traceable author statement /// AT1G01040.2 // GO:0010228 // vegetative to reproductive phase transition of meristem // inferred from mutant phenotype /// AT1G01040.2 // GO:0030422 // production of siRNA involved in RNA interference // inferred from mutant phenotype /// AT1G01040.2 // GO:0000910 // cytokinesis // inferred from mutant phenotype /// AT1G01040.2 // GO:0010098 // suspensor development // inferred from mutant phenotype /// AT1G01040.2 // GO:0009616 // virus induced gene silencing // inferred from mutant phenotype /// AT1G01040.2 // GO:0010599 // production of lsiRNA involved in RNA interference // inferred from mutant phenotype /// AT1G01040.2 // GO:0009880 // embryonic pattern specification // inferred from mutant phenotype /// AT1G01040.2 // GO:0031053 // primary miRNA processing // traceable author statement /// AT1G01040.2 // GO:0007275 // multicellular organismal development // inferred from electronic annotation /// AT1G01040.2 // GO:0000226 // microtubule cytoskeleton organization // inferred from reviewed computational analysis /// AT1G01040.2 // GO:0000911 // cytokinesis by cell plate formation // inferred from reviewed computational analysis /// AT1G01040.2 // GO:0006306 // DNA methylation // inferred from reviewed computational analysis /// AT1G01040.2 // GO:0006342 // chromatin silencing // inferred from reviewed computational analysis /// AT1G01040.2 // GO:0006396 // RNA processing // inferred from electronic annotation /// AT1G01040.2 // GO:0006396 // RNA processing // inferred from reviewed computational analysis /// AT1G01040.2 // GO:0007267 // cell-cell signaling // inferred from reviewed computational analysis /// AT1G01040.2 // GO:0009616 // virus induced gene silencing // inferred from reviewed computational analysis /// AT1G01040.2 // GO:0009630 // gravitropism // inferred from reviewed computational analysis /// AT1G01040.2 // GO:0010050 // vegetative phase change // inferred from reviewed computational analysis /// AT1G01040.2 // GO:0010267 // production of ta-siRNAs involved in RNA interference // inferred from reviewed computational analysis /// AT1G01040.2 // GO:0016569 // covalent chromatin modification // inferred from reviewed computational analysis /// AT1G01040.2 // GO:0022402 // cell cycle process // inferred from reviewed computational analysis /// AT1G01040.2 // GO:0031047 // gene silencing by RNA // inferred from reviewed computational analysis /// AT1G01040.2 // GO:0035196 // production of miRNAs involved in gene silencing by miRNA // inferred from reviewed computational analysis /// AT1G01040.2 // GO:0051607 // defense response to virus // inferred from reviewed computational analysis /// AT1G01040.2 // GO:2000034 // regulation of seed maturation // inferred from mutant phenotype /// AF292940 // GO:0000226 // microtubule cytoskeleton organization // inferred from reviewed computational analysis /// AF292940 // GO:0000910 // cytokinesis // inferred from mutant phenotype /// AF292940 // GO:0000911 // cytokinesis by cell plate formation // inferred from reviewed computational analysis /// AF292940 // GO:0006306 // DNA methylation // inferred from reviewed computational analysis /// AF292940 // GO:0006342 // chromatin silencing // inferred from reviewed computational analysis /// AF292940 // GO:0006396 // RNA processing // inferred from electronic annotation /// AF292940 // GO:0006396 // RNA processing // inferred from sequence or structural similarity /// AF292940 // GO:0006396 // RNA processing // inferred from reviewed computational analysis /// AF292940 // GO:0007267 // cell-cell signaling // inferred from reviewed computational analysis /// AF292940 // GO:0009616 // virus induced gene silencing // inferred from mutant phenotype /// AF292940 // GO:0009616 // virus induced gene silencing // inferred from reviewed computational analysis /// AF292940 // GO:0009630 // gravitropism // inferred from reviewed computational analysis /// AF292940 // GO:0009880 // embryonic pattern specification // inferred from mutant phenotype /// AF292940 // GO:0009908 // flower development // traceable author statement /// AF292940 // GO:0010050 // vegetative phase change // inferred from reviewed computational analysis /// AF292940 // GO:0010098 // suspensor development // inferred from mutant phenotype /// AF292940 // GO:0010228 // vegetative to reproductive phase transition of meristem // inferred from mutant phenotype /// AF292940 // GO:0010267 // production of ta-siRNAs involved in RNA interference // inferred from mutant phenotype /// AF292940 // GO:0010267 // production of ta-siRNAs involved in RNA interference // inferred from reviewed computational analysis /// AF292940 // GO:0010599 // production of lsiRNA involved in RNA interference // inferred from mutant phenotype /// AF292940 // GO:0016569 // covalent chromatin modification // inferred from reviewed computational analysis /// AF292940 // GO:0022402 // cell cycle process // inferred from reviewed computational analysis /// AF292940 // GO:0030422 // production of siRNA involved in RNA interference // inferred from mutant phenotype /// AF292940 // GO:0031047 // gene silencing by RNA // inferred from reviewed computational analysis /// AF292940 // GO:0031053 // primary miRNA processing // traceable author statement /// AF292940 // GO:0035196 // production of miRNAs involved in gene silencing by miRNA // inferred from genetic interaction /// AF292940 // GO:0035196 // production of miRNAs involved in gene silencing by miRNA // inferred from reviewed computational analysis /// AF292940 // GO:0035279 // mRNA cleavage involved in gene silencing by miRNA // inferred from mutant phenotype /// AF292940 // GO:0051607 // defense response to virus // inferred from reviewed computational analysis /// AF292940 // GO:2000034 // regulation of seed maturation // inferred from mutant phenotype
NM_099986 // GO:0005622 // intracellular // inferred from electronic annotation /// NM_099986 // GO:0005634 // nucleus // inferred from direct assay /// NM_099986 // GO:0010445 // nuclear dicing body // inferred from direct assay /// AT1G01040.1 // GO:0005634 // nucleus // inferred from direct assay /// AT1G01040.1 // GO:0010445 // nuclear dicing body // inferred from direct assay /// AT1G01040.1 // GO:0005622 // intracellular // inferred from electronic annotation /// NM_001197952 // GO:0005622 // intracellular // inferred from electronic annotation /// NM_001197952 // GO:0005634 // nucleus // inferred from direct assay /// NM_001197952 // GO:0010445 // nuclear dicing body // inferred from direct assay /// AT1G01040.2 // GO:0005634 // nucleus // inferred from direct assay /// AT1G01040.2 // GO:0010445 // nuclear dicing body // inferred from direct assay /// AT1G01040.2 // GO:0005622 // intracellular // inferred from electronic annotation /// AF292940 // GO:0005622 // intracellular // inferred from electronic annotation /// AF292940 // GO:0005634 // nucleus // inferred from direct assay /// AF292940 // GO:0010445 // nuclear dicing body // inferred from direct assay
"NM_099986 // GO:0003676 // nucleic acid binding // inferred from electronic annotation /// NM_099986 // GO:0003677 // DNA binding // inferred from electronic annotation /// NM_099986 // GO:0003723 // RNA binding // inferred from electronic annotation /// NM_099986 // GO:0003725 // double-stranded RNA binding // inferred from direct assay /// NM_099986 // GO:0003725 // double-stranded RNA binding // inferred from electronic annotation /// NM_099986 // GO:0004386 // helicase activity // inferred from electronic annotation /// NM_099986 // GO:0004525 // ribonuclease III activity // inferred from electronic annotation /// NM_099986 // GO:0004525 // ribonuclease III activity // inferred from sequence or structural similarity /// NM_099986 // GO:0005515 // protein binding // inferred from physical interaction /// NM_099986 // GO:0005524 // ATP binding // inferred from electronic annotation /// NM_099986 // GO:0008026 // ATP-dependent helicase activity // inferred from sequence or structural similarity /// NM_099986 // GO:0016787 // hydrolase activity // inferred from electronic annotation /// NM_099986 // GO:0016891 // endoribonuclease activity, producing 5'-phosphomonoesters // inferred from electronic annotation /// AT1G01040.1 // GO:0003676 // nucleic acid binding // inferred from electronic annotation /// AT1G01040.1 // GO:0004386 // helicase activity // inferred from electronic annotation /// AT1G01040.1 // GO:0005524 // ATP binding // inferred from electronic annotation /// AT1G01040.1 // GO:0016891 // endoribonuclease activity, producing 5'-phosphomonoesters // inferred from electronic annotation /// AT1G01040.1 // GO:0003677 // DNA binding // inferred from electronic annotation /// AT1G01040.1 // GO:0016787 // hydrolase activity // inferred from electronic annotation /// AT1G01040.1 // GO:0005515 // protein binding // inferred from physical interaction /// AT1G01040.1 // GO:0008026 // ATP-dependent helicase activity // inferred from sequence or structural similarity /// AT1G01040.1 // GO:0004525 // ribonuclease III activity // inferred from sequence or structural similarity /// AT1G01040.1 // GO:0003725 // double-stranded RNA binding // inferred from direct assay /// AT1G01040.1 // GO:0003723 // RNA binding // inferred from electronic annotation /// AT1G01040.1 // GO:0003725 // double-stranded RNA binding // inferred from electronic annotation /// AT1G01040.1 // GO:0004525 // ribonuclease III activity // inferred from electronic annotation /// NM_001197952 // GO:0003676 // nucleic acid binding // inferred from electronic annotation /// NM_001197952 // GO:0003677 // DNA binding // inferred from electronic annotation /// NM_001197952 // GO:0003723 // RNA binding // inferred from electronic annotation /// NM_001197952 // GO:0003725 // double-stranded RNA binding // inferred from direct assay /// NM_001197952 // GO:0003725 // double-stranded RNA binding // inferred from electronic annotation /// NM_001197952 // GO:0004386 // helicase activity // inferred from electronic annotation /// NM_001197952 // GO:0004525 // ribonuclease III activity // inferred from electronic annotation /// NM_001197952 // GO:0004525 // ribonuclease III activity // inferred from sequence or structural similarity /// NM_001197952 // GO:0005515 // protein binding // inferred from physical interaction /// NM_001197952 // GO:0005524 // ATP binding // inferred from electronic annotation /// NM_001197952 // GO:0008026 // ATP-dependent helicase activity // inferred from sequence or structural similarity /// NM_001197952 // GO:0016787 // hydrolase activity // inferred from electronic annotation /// NM_001197952 // GO:0016891 // endoribonuclease activity, producing 5'-phosphomonoesters // inferred from electronic annotation /// AT1G01040.2 // GO:0003676 // nucleic acid binding // inferred from electronic annotation /// AT1G01040.2 // GO:0004386 // helicase activity // inferred from electronic annotation /// AT1G01040.2 // GO:0005524 // ATP binding // inferred from electronic annotation /// AT1G01040.2 // GO:0016891 // endoribonuclease activity, producing 5'-phosphomonoesters // inferred from electronic annotation /// AT1G01040.2 // GO:0003677 // DNA binding // inferred from electronic annotation /// AT1G01040.2 // GO:0016787 // hydrolase activity // inferred from electronic annotation /// AT1G01040.2 // GO:0005515 // protein binding // inferred from physical interaction /// AT1G01040.2 // GO:0008026 // ATP-dependent helicase activity // inferred from sequence or structural similarity /// AT1G01040.2 // GO:0004525 // ribonuclease III activity // inferred from sequence or structural similarity /// AT1G01040.2 // GO:0003725 // double-stranded RNA binding // inferred from direct assay /// AT1G01040.2 // GO:0003723 // RNA binding // inferred from electronic annotation /// AT1G01040.2 // GO:0003725 // double-stranded RNA binding // inferred from electronic annotation /// AT1G01040.2 // GO:0004525 // ribonuclease III activity // inferred from electronic annotation /// AF292940 // GO:0003676 // nucleic acid binding // inferred from electronic annotation /// AF292940 // GO:0003677 // DNA binding // inferred from electronic annotation /// AF292940 // GO:0003723 // RNA binding // inferred from electronic annotation /// AF292940 // GO:0003725 // double-stranded RNA binding // inferred from direct assay /// AF292940 // GO:0003725 // double-stranded RNA binding // inferred from electronic annotation /// AF292940 // GO:0004386 // helicase activity // inferred from electronic annotation /// AF292940 // GO:0004525 // ribonuclease III activity // inferred from electronic annotation /// AF292940 // GO:0004525 // ribonuclease III activity // inferred from sequence or structural similarity /// AF292940 // GO:0005515 // protein binding // inferred from physical interaction /// AF292940 // GO:0005524 // ATP binding // inferred from electronic annotation /// AF292940 // GO:0008026 // ATP-dependent helicase activity // inferred from sequence or structural similarity /// AF292940 // GO:0016787 // hydrolase activity // inferred from electronic annotation /// AF292940 // GO:0016891 // endoribonuclease activity, producing 5'-phosphomonoesters // inferred from electronic annotation "
"AT1G01040.1 // Pfam // IPR000999 // Ribonuclease III domain /// AT1G01040.1 // Pfam // IPR001159 // Double-stranded RNA-binding /// AT1G01040.1 // Pfam // IPR001650 // Helicase, C-terminal /// AT1G01040.1 // Pfam // IPR003100 // Argonaute/Dicer protein, PAZ /// AT1G01040.1 // Pfam // IPR005034 // Dicer double-stranded RNA-binding fold /// AT1G01040.1 // Pfam // IPR006935 // Helicase/UvrB domain /// AT1G01040.1 // Pfam // IPR011545 // DNA/RNA helicase, DEAD/DEAH box type, N-terminal /// AT1G01040.2 // Pfam // IPR000999 // Ribonuclease III domain /// AT1G01040.2 // Pfam // IPR001159 // Double-stranded RNA-binding /// AT1G01040.2 // Pfam // IPR001650 // Helicase, C-terminal /// AT1G01040.2 // Pfam // IPR003100 // Argonaute/Dicer protein, PAZ /// AT1G01040.2 // Pfam // IPR005034 // Dicer double-stranded RNA-binding fold /// AT1G01040.2 // Pfam // IPR006935 // Helicase/UvrB domain /// AT1G01040.2 // Pfam // IPR011545 // DNA/RNA helicase, DEAD/DEAH box type, N-terminal"
1
main
13334190
chr1
+
28500
28706
23
---
"At1g01040 // The Institute for Genomic Research // 68414.t00004 DEAD/DEAH box helicase carpel factory / CAF identical to RNA helicase/RNAseIII CAF protein GB:AAF03534 GI:6102610 from [Arabidopsis thaliana] // chr1 // 100 // 100 // 23 // 23 // 0 /// ath-MIR838 // miRBase Micro RNA Database // MI0005394 Arabidopsis thaliana miR838 stem-loop // chr1 // 100 // 100 // 23 // 23 // 0 /// AK221473 // GenBank // Arabidopsis thaliana mRNA for CAF protein, complete cds, clone: RAFL07-36-P21. // chr1 // 87 // 100 // 20 // 23 // 0"
At1g01040
At1g01040 // Q9SP32 /// AK221473 // Q56Y50
---
---
---
---
1
main
13334192
chr1
+
44677
44787
17
NM_001160824 // AT1G01073 // hypothetical protein // --- // 7922546 /// AT1G01073.1 // AT1G01073 // hypothetical protein // --- // 7922546
"NM_001160824 // RefSeq // Arabidopsis thaliana uncharacterized protein (AT1G01073) mRNA, complete cds. // chr1 // 100 // 100 // 17 // 17 // 0 /// AT1G01073.1 // ENSEMBL // cdna:known chromosome:TAIR10:1:44677:44787:1 gene:AT1G01073 transcript:AT1G01073.1 // chr1 // 100 // 100 // 17 // 17 // 0"
NM_001160824
---
NM_001160824 // GO:0008150 // biological_process // no biological data available /// AT1G01073.1 // GO:0008150 // biological_process // no biological data available
AT1G01073.1 // GO:0012505 // endomembrane system // inferred from electronic annotation
NM_001160824 // GO:0003674 // molecular_function // no biological data available /// AT1G01073.1 // GO:0003674 // molecular_function // no biological data available
---
1
main
13334194
chr1
+
52239
54692
19
NM_001123732 // IQD18 // protein IQ-domain 18 // --- // 839394 /// AT1G01110.2 // IQD18 // protein IQ-domain 18 // --- // 839394 /// NM_099993 // IQD18 // protein IQ-domain 18 // --- // 839394 /// AT1G01110.1 // IQD18 // protein IQ-domain 18 // --- // 839394
"NM_001123732 // RefSeq // Arabidopsis thaliana protein IQ-domain 18 (IQD18) mRNA, complete cds. // chr1 // 100 // 100 // 19 // 19 // 0 /// AT1G01110.2 // ENSEMBL // cdna:known chromosome:TAIR10:1:52239:54692:1 gene:AT1G01110 transcript:AT1G01110.2 // chr1 // 100 // 100 // 19 // 19 // 0 /// NM_099993 // RefSeq // Arabidopsis thaliana protein IQ-domain 18 (IQD18) mRNA, complete cds. // chr1 // 100 // 63 // 12 // 12 // 0 /// AT1G01110.1 // ENSEMBL // cdna:known chromosome:TAIR10:1:52869:54685:1 gene:AT1G01110 transcript:AT1G01110.1 // chr1 // 100 // 63 // 12 // 12 // 0 /// At1g01110 // The Institute for Genomic Research // 68414.t00011 expressed protein contains Prosite PS00165: Serine/threonine dehydratases pyridoxal-phosphate attachment site // chr1 // 100 // 63 // 12 // 12 // 0"
NM_001123732
AT1G01110.2
NM_099993 // Q8LEL3 /// At1g01110 // Q9MAM4
---
AT1G01110.2 // GO:0005739 // mitochondrion // inferred from electronic annotation /// AT1G01110.1 // GO:0005739 // mitochondrion // inferred from electronic annotation
NM_001123732 // GO:0003674 // molecular_function // no biological data available /// AT1G01110.2 // GO:0005515 // protein binding // inferred from electronic annotation /// AT1G01110.2 // GO:0003674 // molecular_function // no biological data available /// NM_099993 // GO:0003674 // molecular_function // no biological data available /// AT1G01110.1 // GO:0003674 // molecular_function // no biological data available
"AT1G01110.2 // Pfam // IPR000048 // IQ motif, EF-hand binding site"
1
main
13334202
chr1
+
56624
56740
25
NM_001160825 // AT1G01115 // hypothetical protein // --- // 7922461 /// AT1G01115.1 // AT1G01115 // hypothetical protein // --- // 7922461
"NM_001160825 // RefSeq // Arabidopsis thaliana uncharacterized protein (AT1G01115) mRNA, complete cds. // chr1 // 100 // 100 // 25 // 25 // 0 /// AT1G01115.1 // ENSEMBL // cdna:known chromosome:TAIR10:1:56624:56740:1 gene:AT1G01115 transcript:AT1G01115.1 // chr1 // 100 // 100 // 25 // 25 // 0"
NM_001160825
---
NM_001160825 // GO:0008150 // biological_process // no biological data available /// AT1G01115.1 // GO:0008150 // biological_process // no biological data available
AT1G01115.1 // GO:0012505 // endomembrane system // inferred from electronic annotation
NM_001160825 // GO:0003674 // molecular_function // no biological data available /// AT1G01115.1 // GO:0003674 // molecular_function // no biological data available
---
1
main
13334204
chr1
+
72339
74096
22
NM_001160826 // GIF2 // GRF1-interacting factor 2 // --- // 839278 /// AT1G01160.2 // GIF2 // GRF1-interacting factor 2 // --- // 839278 /// NM_099998 // GIF2 // GRF1-interacting factor 2 // --- // 839278 /// AT1G01160.1 // GIF2 // GRF1-interacting factor 2 // --- // 839278 /// NM_099999 // AT1G01170 // hypothetical protein // --- // 839263 /// NM_001035849 // AT1G01170 // hypothetical protein // --- // 839263 /// AT1G01170.2 // AT1G01170 // hypothetical protein // --- // 839263 /// AT1G01170.1 // AT1G01170 // hypothetical protein // --- // 839263 /// AY102640 // GIF2 // GRF1-interacting factor 2 // --- // 839278
"NM_001160826 // RefSeq // Arabidopsis thaliana GRF1-interacting factor 2 (GIF2) mRNA, complete cds. // chr1 // 100 // 100 // 22 // 22 // 0 /// AT1G01160.2 // ENSEMBL // cdna:known chromosome:TAIR10:1:72357:74096:1 gene:AT1G01160 transcript:AT1G01160.2 // chr1 // 100 // 100 // 22 // 22 // 0 /// NM_099998 // RefSeq // Arabidopsis thaliana GRF1-interacting factor 2 (GIF2) mRNA, complete cds. // chr1 // 100 // 86 // 19 // 19 // 0 /// AT1G01160.1 // ENSEMBL // cdna:known chromosome:TAIR10:1:72339:74096:1 gene:AT1G01160 transcript:AT1G01160.1 // chr1 // 100 // 86 // 19 // 19 // 0 /// NM_099999 // RefSeq // Arabidopsis thaliana uncharacterized protein (AT1G01170) mRNA, complete cds. // chr1 // 100 // 14 // 3 // 3 // 0 /// NM_001035849 // RefSeq // Arabidopsis thaliana uncharacterized protein (AT1G01170) mRNA, complete cds. // chr1 // 100 // 14 // 3 // 3 // 0 /// AT1G01170.2 // ENSEMBL // cdna:known chromosome:TAIR10:1:73931:74731:-1 gene:AT1G01170 transcript:AT1G01170.2 // chr1 // 100 // 14 // 3 // 3 // 0 /// AT1G01170.1 // ENSEMBL // cdna:known chromosome:TAIR10:1:73931:74737:-1 gene:AT1G01170 transcript:AT1G01170.1 // chr1 // 100 // 14 // 3 // 3 // 0 /// AY102640 // GenBank // Arabidopsis thaliana GRF1-interacting factor 2 (GIF2) mRNA, complete cds. // chr1 // 100 // 77 // 17 // 17 // 0 /// At1g01160 // The Institute for Genomic Research // 68414.t00019 SSXT protein-related / transcription co-activator-related similar to SYT/SSX4 fusion protein (GI:11127695) [Homo sapiens]; supporting cDNA gi|21539891|gb|AY102640.1|; contains Pfam profile PF05030: SSXT protein (N-terminal region) // chr1 // 100 // 100 // 22 // 22 // 0"
NM_001160826
AT1G01160.2
AY102640 // Q9MAL9 /// At1g01160 // Q9MAL9
"NM_001160826 // GO:0000956 // nuclear-transcribed mRNA catabolic process // inferred from reviewed computational analysis /// NM_001160826 // GO:0006355 // regulation of transcription, DNA-dependent // inferred from reviewed computational analysis /// NM_001160826 // GO:0006396 // RNA processing // inferred from reviewed computational analysis /// NM_001160826 // GO:0008283 // cell proliferation // inferred from expression pattern /// NM_001160826 // GO:0009410 // response to xenobiotic stimulus // inferred from reviewed computational analysis /// NM_001160826 // GO:0010048 // vernalization response // inferred from reviewed computational analysis /// NM_001160826 // GO:0022402 // cell cycle process // inferred from reviewed computational analysis /// NM_001160826 // GO:0043687 // post-translational protein modification // inferred from reviewed computational analysis /// NM_001160826 // GO:0045893 // positive regulation of transcription, DNA-dependent // inferred from reviewed computational analysis /// NM_001160826 // GO:0048366 // leaf development // inferred from mutant phenotype /// NM_001160826 // GO:0048522 // positive regulation of cellular process // inferred from reviewed computational analysis /// AT1G01160.2 // GO:0008283 // cell proliferation // inferred from expression pattern /// AT1G01160.2 // GO:0048366 // leaf development // inferred from mutant phenotype /// AT1G01160.2 // GO:0000956 // nuclear-transcribed mRNA catabolic process // inferred from reviewed computational analysis /// AT1G01160.2 // GO:0006355 // regulation of transcription, DNA-dependent // inferred from reviewed computational analysis /// AT1G01160.2 // GO:0006396 // RNA processing // inferred from reviewed computational analysis /// AT1G01160.2 // GO:0009410 // response to xenobiotic stimulus // inferred from reviewed computational analysis /// AT1G01160.2 // GO:0010048 // vernalization response // inferred from reviewed computational analysis /// AT1G01160.2 // GO:0022402 // cell cycle process // inferred from reviewed computational analysis /// AT1G01160.2 // GO:0043687 // post-translational protein modification // inferred from reviewed computational analysis /// AT1G01160.2 // GO:0045893 // positive regulation of transcription, DNA-dependent // inferred from reviewed computational analysis /// AT1G01160.2 // GO:0048522 // positive regulation of cellular process // inferred from reviewed computational analysis /// NM_099998 // GO:0000956 // nuclear-transcribed mRNA catabolic process // inferred from reviewed computational analysis /// NM_099998 // GO:0006355 // regulation of transcription, DNA-dependent // inferred from reviewed computational analysis /// NM_099998 // GO:0006396 // RNA processing // inferred from reviewed computational analysis /// NM_099998 // GO:0008283 // cell proliferation // inferred from expression pattern /// NM_099998 // GO:0009410 // response to xenobiotic stimulus // inferred from reviewed computational analysis /// NM_099998 // GO:0010048 // vernalization response // inferred from reviewed computational analysis /// NM_099998 // GO:0022402 // cell cycle process // inferred from reviewed computational analysis /// NM_099998 // GO:0043687 // post-translational protein modification // inferred from reviewed computational analysis /// NM_099998 // GO:0045893 // positive regulation of transcription, DNA-dependent // inferred from reviewed computational analysis /// NM_099998 // GO:0048366 // leaf development // inferred from mutant phenotype /// NM_099998 // GO:0048522 // positive regulation of cellular process // inferred from reviewed computational analysis /// AT1G01160.1 // GO:0008283 // cell proliferation // inferred from expression pattern /// AT1G01160.1 // GO:0048366 // leaf development // inferred from mutant phenotype /// AT1G01160.1 // GO:0000956 // nuclear-transcribed mRNA catabolic process // inferred from reviewed computational analysis /// AT1G01160.1 // GO:0006355 // regulation of transcription, DNA-dependent // inferred from reviewed computational analysis /// AT1G01160.1 // GO:0006396 // RNA processing // inferred from reviewed computational analysis /// AT1G01160.1 // GO:0009410 // response to xenobiotic stimulus // inferred from reviewed computational analysis /// AT1G01160.1 // GO:0010048 // vernalization response // inferred from reviewed computational analysis /// AT1G01160.1 // GO:0022402 // cell cycle process // inferred from reviewed computational analysis /// AT1G01160.1 // GO:0043687 // post-translational protein modification // inferred from reviewed computational analysis /// AT1G01160.1 // GO:0045893 // positive regulation of transcription, DNA-dependent // inferred from reviewed computational analysis /// AT1G01160.1 // GO:0048522 // positive regulation of cellular process // inferred from reviewed computational analysis /// NM_099999 // GO:0006950 // response to stress // inferred from sequence or structural similarity /// NM_001035849 // GO:0006950 // response to stress // inferred from sequence or structural similarity /// AT1G01170.2 // GO:0006950 // response to stress // inferred from sequence or structural similarity /// AT1G01170.1 // GO:0006950 // response to stress // inferred from sequence or structural similarity /// AY102640 // GO:0000956 // nuclear-transcribed mRNA catabolic process // inferred from reviewed computational analysis /// AY102640 // GO:0006355 // regulation of transcription, DNA-dependent // inferred from reviewed computational analysis /// AY102640 // GO:0006396 // RNA processing // inferred from reviewed computational analysis /// AY102640 // GO:0008283 // cell proliferation // inferred from expression pattern /// AY102640 // GO:0009410 // response to xenobiotic stimulus // inferred from reviewed computational analysis /// AY102640 // GO:0010048 // vernalization response // inferred from reviewed computational analysis /// AY102640 // GO:0022402 // cell cycle process // inferred from reviewed computational analysis /// AY102640 // GO:0043687 // post-translational protein modification // inferred from reviewed computational analysis /// AY102640 // GO:0045893 // positive regulation of transcription, DNA-dependent // inferred from reviewed computational analysis /// AY102640 // GO:0048366 // leaf development // inferred from mutant phenotype /// AY102640 // GO:0048522 // positive regulation of cellular process // inferred from reviewed computational analysis "
NM_001160826 // GO:0005634 // nucleus // inferred from sequence or structural similarity /// AT1G01160.2 // GO:0005634 // nucleus // inferred from sequence or structural similarity /// NM_099998 // GO:0005634 // nucleus // inferred from sequence or structural similarity /// AT1G01160.1 // GO:0005634 // nucleus // inferred from sequence or structural similarity /// NM_099999 // GO:0005739 // mitochondrion // inferred from direct assay /// NM_099999 // GO:0016020 // membrane // inferred from direct assay /// NM_001035849 // GO:0005739 // mitochondrion // inferred from direct assay /// NM_001035849 // GO:0016020 // membrane // inferred from direct assay /// AT1G01170.2 // GO:0016020 // membrane // inferred from direct assay /// AT1G01170.2 // GO:0005739 // mitochondrion // inferred from direct assay /// AT1G01170.1 // GO:0016020 // membrane // inferred from direct assay /// AT1G01170.1 // GO:0005739 // mitochondrion // inferred from direct assay /// AY102640 // GO:0005634 // nucleus // inferred from sequence or structural similarity
NM_001160826 // GO:0003713 // transcription coactivator activity // inferred from sequence or structural similarity /// NM_001160826 // GO:0005515 // protein binding // inferred from physical interaction /// AT1G01160.2 // GO:0005515 // protein binding // inferred from physical interaction /// AT1G01160.2 // GO:0003713 // transcription coactivator activity // inferred from sequence or structural similarity /// NM_099998 // GO:0003713 // transcription coactivator activity // inferred from sequence or structural similarity /// NM_099998 // GO:0005515 // protein binding // inferred from physical interaction /// AT1G01160.1 // GO:0005515 // protein binding // inferred from physical interaction /// AT1G01160.1 // GO:0003713 // transcription coactivator activity // inferred from sequence or structural similarity /// NM_099999 // GO:0003674 // molecular_function // no biological data available /// NM_001035849 // GO:0003674 // molecular_function // no biological data available /// AT1G01170.2 // GO:0003674 // molecular_function // no biological data available /// AT1G01170.1 // GO:0003674 // molecular_function // no biological data available /// AY102640 // GO:0003713 // transcription coactivator activity // inferred from sequence or structural similarity /// AY102640 // GO:0005515 // protein binding // inferred from physical interaction
AT1G01160.2 // Pfam // IPR007726 // SSXT /// AT1G01160.1 // Pfam // IPR007726 // SSXT /// AT1G01170.2 // Pfam // IPR009515 // Protein of unknown function DUF1138 /// AT1G01170.1 // Pfam // IPR009515 // Protein of unknown function DUF1138
1
main
13334213
chr1
+
75583
76758
16
NM_100000 // AT1G01180 // S-adenosyl-L-methionine-dependent methyltransferase domain-containing protein // --- // 839239 /// AT1G01180.1 // AT1G01180 // S-adenosyl-L-methionine-dependent methyltransferase domain-containing protein // --- // 839239
"NM_100000 // RefSeq // Arabidopsis thaliana S-adenosyl-L-methionine-dependent methyltransferase domain-containing protein (AT1G01180) mRNA, complete cds. // chr1 // 100 // 100 // 16 // 16 // 0 /// AT1G01180.1 // ENSEMBL // cdna:known chromosome:TAIR10:1:75583:76758:1 gene:AT1G01180 transcript:AT1G01180.1 // chr1 // 100 // 100 // 16 // 16 // 0 /// At1g01180 // The Institute for Genomic Research // 68414.t00023 expressed protein // chr1 // 100 // 81 // 13 // 13 // 0"
NM_100000
NM_100000 // Q0WRD8 /// At1g01180 // Q9MAL7
NM_100000 // GO:0008610 // lipid biosynthetic process // inferred from electronic annotation /// AT1G01180.1 // GO:0008610 // lipid biosynthetic process // inferred from electronic annotation
---
NM_100000 // GO:0008168 // methyltransferase activity // inferred from electronic annotation /// AT1G01180.1 // GO:0008168 // methyltransferase activity // inferred from electronic annotation
---
1
main
13334217
chr1
+
88898
89745
16
NM_100003 // AT1G01210 // DNA-directed RNA polymerase III subunit C11 // --- // 839481 /// AT1G01210.1 // AT1G01210 // DNA-directed RNA polymerase III subunit C11 // --- // 839481 /// BT008671 // AT1G01210 // DNA-directed RNA polymerase III subunit C11 // --- // 839481
"NM_100003 // RefSeq // Arabidopsis thaliana DNA-directed RNA polymerase III subunit C11 (AT1G01210) mRNA, complete cds. // chr1 // 100 // 100 // 16 // 16 // 0 /// AT1G01210.1 // ENSEMBL // cdna:known chromosome:TAIR10:1:88898:89745:1 gene:AT1G01210 transcript:AT1G01210.1 // chr1 // 100 // 100 // 16 // 16 // 0 /// BT008671 // GenBank // Arabidopsis thaliana clone RAFL17-25-D24 (R50415) unknown protein (At1g01210) mRNA, complete cds. // chr1 // 100 // 100 // 16 // 16 // 0 /// At1g01210 // The Institute for Genomic Research // 68414.t00028 DNA-directed RNA polymerase III family protein similar to SP|O13896 DNA-directed RNA polymerases III 12.5 kDa polypeptide (EC 2.7.7.6) {Schizosaccharomyces pombe}; contains Pfam profiles PF02150: RNA polymerases M/15 Kd subunit, PF01096: Transcription factor S-II (TFIIS) // chr1 // 100 // 100 // 16 // 16 // 0"
NM_100003
AT1G01210.1
NM_100003 // Q9LNK0 /// BT008671 // Q9LNK0 /// At1g01210 // Q9LNK0
"NM_100003 // GO:0006351 // transcription, DNA-dependent // inferred from electronic annotation /// NM_100003 // GO:0006354 // transcription elongation, DNA-dependent // inferred from sequence or structural similarity /// NM_100003 // GO:0006355 // regulation of transcription, DNA-dependent // inferred from sequence or structural similarity /// AT1G01210.1 // GO:0006355 // regulation of transcription, DNA-dependent // inferred from sequence or structural similarity /// AT1G01210.1 // GO:0006354 // transcription elongation, DNA-dependent // inferred from sequence or structural similarity /// AT1G01210.1 // GO:0006351 // transcription, DNA-dependent // inferred from electronic annotation /// BT008671 // GO:0006351 // transcription, DNA-dependent // inferred from electronic annotation /// BT008671 // GO:0006354 // transcription elongation, DNA-dependent // inferred from sequence or structural similarity /// BT008671 // GO:0006355 // regulation of transcription, DNA-dependent // inferred from sequence or structural similarity "
NM_100003 // GO:0005634 // nucleus // inferred from sequence or structural similarity /// AT1G01210.1 // GO:0005634 // nucleus // inferred from sequence or structural similarity /// BT008671 // GO:0005634 // nucleus // inferred from sequence or structural similarity
NM_100003 // GO:0003676 // nucleic acid binding // inferred from electronic annotation /// NM_100003 // GO:0003677 // DNA binding // inferred from electronic annotation /// NM_100003 // GO:0003677 // DNA binding // inferred from sequence or structural similarity /// NM_100003 // GO:0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// NM_100003 // GO:0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarity /// NM_100003 // GO:0003899 // DNA-directed RNA polymerase activity // inferred from electronic annotation /// NM_100003 // GO:0003899 // DNA-directed RNA polymerase activity // inferred from sequence or structural similarity /// NM_100003 // GO:0008270 // zinc ion binding // inferred from electronic annotation /// AT1G01210.1 // GO:0003677 // DNA binding // inferred from electronic annotation /// AT1G01210.1 // GO:0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// AT1G01210.1 // GO:0003676 // nucleic acid binding // inferred from electronic annotation /// AT1G01210.1 // GO:0030528 // transcription regulator activity // inferred from electronic annotation /// AT1G01210.1 // GO:0008270 // zinc ion binding // inferred from electronic annotation /// AT1G01210.1 // GO:0003899 // DNA-directed RNA polymerase activity // inferred from electronic annotation /// AT1G01210.1 // GO:0003677 // DNA binding // inferred from sequence or structural similarity /// AT1G01210.1 // GO:0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarity /// AT1G01210.1 // GO:0003899 // DNA-directed RNA polymerase activity // inferred from sequence or structural similarity /// BT008671 // GO:0003676 // nucleic acid binding // inferred from electronic annotation /// BT008671 // GO:0003677 // DNA binding // inferred from electronic annotation /// BT008671 // GO:0003677 // DNA binding // inferred from sequence or structural similarity /// BT008671 // GO:0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// BT008671 // GO:0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarity /// BT008671 // GO:0003899 // DNA-directed RNA polymerase activity // inferred from electronic annotation /// BT008671 // GO:0003899 // DNA-directed RNA polymerase activity // inferred from sequence or structural similarity /// BT008671 // GO:0008270 // zinc ion binding // inferred from electronic annotation
"AT1G01210.1 // Pfam // IPR001222 // Zinc finger, TFIIS-type /// AT1G01210.1 // Pfam // IPR001529 // DNA-directed RNA polymerase, M/15kDa subunit"
1
main
13334223
chr1
+
91376
95651
22
NM_100004 // FKGP // L-fucokinase/GDP-L-fucose pyrophosphorylase // --- // 839420 /// AT1G01220.1 // FKGP // L-fucokinase/GDP-L-fucose pyrophosphorylase // --- // 839420
"NM_100004 // RefSeq // Arabidopsis thaliana L-fucokinase/GDP-L-fucose pyrophosphorylase (FKGP) mRNA, complete cds. // chr1 // 100 // 100 // 22 // 22 // 0 /// AT1G01220.1 // ENSEMBL // cdna:known chromosome:TAIR10:1:91376:95651:1 gene:AT1G01220 transcript:AT1G01220.1 // chr1 // 100 // 100 // 22 // 22 // 0 /// At1g01220 // The Institute for Genomic Research // 68414.t00029 GHMP kinase-related contains similarity to L-fucose kinase [Homo sapiens] gi|21212956|emb|CAD29647 // chr1 // 100 // 77 // 17 // 17 // 0"
NM_100004
AT1G01220.1
At1g01220 // Q9LNJ9
NM_100004 // GO:0008152 // metabolic process // inferred from electronic annotation /// NM_100004 // GO:0030244 // cellulose biosynthetic process // inferred from reviewed computational analysis /// NM_100004 // GO:0042352 // GDP-L-fucose salvage // inferred from direct assay /// NM_100004 // GO:0048193 // Golgi vesicle transport // inferred from reviewed computational analysis /// AT1G01220.1 // GO:0016310 // phosphorylation // inferred from electronic annotation /// AT1G01220.1 // GO:0042352 // GDP-L-fucose salvage // inferred from direct assay /// AT1G01220.1 // GO:0008152 // metabolic process // inferred from electronic annotation /// AT1G01220.1 // GO:0030244 // cellulose biosynthetic process // inferred from reviewed computational analysis /// AT1G01220.1 // GO:0048193 // Golgi vesicle transport // inferred from reviewed computational analysis
NM_100004 // GO:0005737 // cytoplasm // inferred from electronic annotation /// AT1G01220.1 // GO:0005737 // cytoplasm // inferred from electronic annotation
"NM_100004 // GO:0004335 // galactokinase activity // inferred from sequence or structural similarity /// NM_100004 // GO:0005524 // ATP binding // inferred from electronic annotation /// NM_100004 // GO:0005524 // ATP binding // inferred from sequence or structural similarity /// NM_100004 // GO:0016301 // kinase activity // inferred from electronic annotation /// NM_100004 // GO:0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// NM_100004 // GO:0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation /// NM_100004 // GO:0047341 // fucose-1-phosphate guanylyltransferase activity // inferred from direct assay /// NM_100004 // GO:0050201 // fucokinase activity // inferred from direct assay /// AT1G01220.1 // GO:0016301 // kinase activity // inferred from electronic annotation /// AT1G01220.1 // GO:0005524 // ATP binding // inferred from sequence or structural similarity /// AT1G01220.1 // GO:0004335 // galactokinase activity // inferred from sequence or structural similarity /// AT1G01220.1 // GO:0047341 // fucose-1-phosphate guanylyltransferase activity // inferred from direct assay /// AT1G01220.1 // GO:0050201 // fucokinase activity // inferred from direct assay /// AT1G01220.1 // GO:0005524 // ATP binding // inferred from electronic annotation /// AT1G01220.1 // GO:0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// AT1G01220.1 // GO:0016773 // phosphotransferase activity, alcohol group as acceptor // inferred from electronic annotation "
"AT1G01220.1 // Pfam // IPR006204 // GHMP kinase N-terminal domain /// AT1G01220.1 // Pfam // IPR012887 // L-fucokinase /// AT1G01220.1 // Pfam // IPR013750 // GHMP kinase, C-terminal domain"
1
main
13334233
chr1
+
95987
97407
26
NM_100005 // AT1G01225 // NC domain-containing protein-like protein // --- // 839358 /// AT1G01225.1 // AT1G01225 // NC domain-containing protein-like protein // --- // 839358 /// BT024776 // AT1G01225 // NC domain-containing protein-like protein // --- // 839358
"NM_100005 // RefSeq // Arabidopsis thaliana NC domain-containing protein-like protein (AT1G01225) mRNA, complete cds. // chr1 // 100 // 100 // 26 // 26 // 0 /// AT1G01225.1 // ENSEMBL // cdna:known chromosome:TAIR10:1:95987:97407:1 gene:AT1G01225 transcript:AT1G01225.1 // chr1 // 100 // 100 // 26 // 26 // 0 /// BT024776 // GenBank // Arabidopsis thaliana At1g01225 mRNA, complete cds. // chr1 // 100 // 46 // 12 // 12 // 0 /// At1g01225 // The Institute for Genomic Research // 68414.t00030 NC domain-containing protein-related contains weak hit to Pfam profile PF04970: NC domain // chr1 // 100 // 100 // 26 // 26 // 0"
NM_100005
AT1G01225.1
NM_100005 // Q8LBP8 /// BT024776 // Q29PY0 /// BT024776 // Q8LBP8 /// At1g01225 // Q29PY0
NM_100005 // GO:0010089 // xylem development // inferred from reviewed computational analysis /// NM_100005 // GO:0010382 // cellular cell wall macromolecule metabolic process // inferred from reviewed computational analysis /// AT1G01225.1 // GO:0010089 // xylem development // inferred from reviewed computational analysis /// AT1G01225.1 // GO:0010382 // cellular cell wall macromolecule metabolic process // inferred from reviewed computational analysis /// BT024776 // GO:0010089 // xylem development // inferred from reviewed computational analysis /// BT024776 // GO:0010382 // cellular cell wall macromolecule metabolic process // inferred from reviewed computational analysis
NM_100005 // GO:0005575 // cellular_component // no biological data available /// AT1G01225.1 // GO:0005575 // cellular_component // no biological data available /// BT024776 // GO:0005575 // cellular_component // no biological data available
---
AT1G01225.1 // Pfam // IPR007053 // LRAT-like domain
1
main
13334238
chr1
+
97456
99240
20
NM_100006 // AT1G01230 // ORMDL-like protein // --- // 839331 /// AT1G01230.1 // AT1G01230 // ORMDL-like protein // --- // 839331 /// AF360237 // AT1G01230 // ORMDL-like protein // --- // 839331
"NM_100006 // RefSeq // Arabidopsis thaliana ORMDL-like protein (AT1G01230) mRNA, complete cds. // chr1 // 100 // 100 // 20 // 20 // 0 /// AT1G01230.1 // ENSEMBL // cdna:known chromosome:TAIR10:1:97456:99240:1 gene:AT1G01230 transcript:AT1G01230.1 // chr1 // 100 // 100 // 20 // 20 // 0 /// AF360237 // GenBank // Arabidopsis thaliana unknown protein (At1g01230) mRNA, complete cds. // chr1 // 94 // 85 // 16 // 17 // 0 /// At1g01230 // The Institute for Genomic Research // 68414.t00031 ORMDL family protein contains Pfam domain PF04061: ORMDL family // chr1 // 100 // 95 // 19 // 19 // 0"
NM_100006
AT1G01230.1
AF360237 // Q9C5I0 /// At1g01230 // Q9C5I0
NM_100006 // GO:0006457 // protein folding // inferred from sequence or structural similarity /// NM_100006 // GO:0006661 // phosphatidylinositol biosynthetic process // inferred from reviewed computational analysis /// NM_100006 // GO:0010286 // heat acclimation // inferred from reviewed computational analysis /// AT1G01230.1 // GO:0006457 // protein folding // inferred from sequence or structural similarity /// AT1G01230.1 // GO:0006661 // phosphatidylinositol biosynthetic process // inferred from reviewed computational analysis /// AT1G01230.1 // GO:0010286 // heat acclimation // inferred from reviewed computational analysis /// AF360237 // GO:0006457 // protein folding // inferred from sequence or structural similarity /// AF360237 // GO:0006661 // phosphatidylinositol biosynthetic process // inferred from reviewed computational analysis /// AF360237 // GO:0010286 // heat acclimation // inferred from reviewed computational analysis
NM_100006 // GO:0005783 // endoplasmic reticulum // inferred from sequence or structural similarity /// NM_100006 // GO:0016021 // integral to membrane // inferred from electronic annotation /// AT1G01230.1 // GO:0005783 // endoplasmic reticulum // inferred from sequence or structural similarity /// AT1G01230.1 // GO:0016021 // integral to membrane // inferred from electronic annotation /// AF360237 // GO:0005783 // endoplasmic reticulum // inferred from sequence or structural similarity /// AF360237 // GO:0016021 // integral to membrane // inferred from electronic annotation
NM_100006 // GO:0003674 // molecular_function // no biological data available /// AT1G01230.1 // GO:0003674 // molecular_function // no biological data available /// AF360237 // GO:0003674 // molecular_function // no biological data available
AT1G01230.1 // Pfam // IPR007203 // ORMDL
1
main
13334244
chr1
+
99894
101834
23
NM_202007 // AT1G01240 // hypothetical protein // --- // 839274 /// AT1G01240.3 // AT1G01240 // hypothetical protein // --- // 839274 /// NM_100007 // AT1G01240 // hypothetical protein // --- // 839274 /// AT1G01240.1 // AT1G01240 // hypothetical protein // --- // 839274 /// NM_202006 // AT1G01240 // hypothetical protein // --- // 839274 /// AT1G01240.2 // AT1G01240 // hypothetical protein // --- // 839274 /// AF428444 // AT1G01240 // hypothetical protein // --- // 839274
"NM_202007 // RefSeq // Arabidopsis thaliana uncharacterized protein (AT1G01240) mRNA, complete cds. // chr1 // 100 // 100 // 23 // 23 // 0 /// AT1G01240.3 // ENSEMBL // cdna:known chromosome:TAIR10:1:99894:101834:1 gene:AT1G01240 transcript:AT1G01240.3 // chr1 // 100 // 100 // 23 // 23 // 0 /// NM_100007 // RefSeq // Arabidopsis thaliana uncharacterized protein (AT1G01240) mRNA, complete cds. // chr1 // 100 // 57 // 13 // 13 // 0 /// AT1G01240.1 // ENSEMBL // cdna:known chromosome:TAIR10:1:99922:101834:1 gene:AT1G01240 transcript:AT1G01240.1 // chr1 // 100 // 57 // 13 // 13 // 0 /// NM_202006 // RefSeq // Arabidopsis thaliana uncharacterized protein (AT1G01240) mRNA, complete cds. // chr1 // 100 // 52 // 12 // 12 // 0 /// AT1G01240.2 // ENSEMBL // cdna:known chromosome:TAIR10:1:100031:101834:1 gene:AT1G01240 transcript:AT1G01240.2 // chr1 // 100 // 52 // 12 // 12 // 0 /// AF428444 // GenBank // Arabidopsis thaliana At1g01240/F6F3_11 mRNA, complete cds. // chr1 // 100 // 57 // 13 // 13 // 0 /// At1g01240 // The Institute for Genomic Research // 68414.t00032 expressed protein // chr1 // 100 // 100 // 23 // 23 // 0"
NM_202007
AF428444 // Q9LNJ7 /// At1g01240 // Q9LNJ7
---
---
---
---
1
main
13334251
chr1
+
108946
111609
30
NM_001197954 // AT1G01260 // transcription factor bHLH13 // --- // 839545 /// AT1G01260.3 // AT1G01260 // transcription factor bHLH13 // --- // 839545 /// NM_100009 // AT1G01260 // transcription factor bHLH13 // --- // 839545 /// AT1G01260.1 // AT1G01260 // transcription factor bHLH13 // --- // 839545 /// NM_001083971 // AT1G01260 // transcription factor bHLH13 // --- // 839545 /// AT1G01260.2 // AT1G01260 // transcription factor bHLH13 // --- // 839545 /// AY120752 // AT1G01260 // transcription factor bHLH13 // --- // 839545
"NM_001197954 // RefSeq // Arabidopsis thaliana transcription factor bHLH13 (AT1G01260) mRNA, complete cds. // chr1 // 100 // 90 // 27 // 27 // 0 /// AT1G01260.3 // ENSEMBL // cdna:known chromosome:TAIR10:1:108946:111597:1 gene:AT1G01260 transcript:AT1G01260.3 // chr1 // 100 // 90 // 27 // 27 // 0 /// NM_100009 // RefSeq // Arabidopsis thaliana transcription factor bHLH13 (AT1G01260) mRNA, complete cds. // chr1 // 100 // 87 // 26 // 26 // 0 /// AT1G01260.1 // ENSEMBL // cdna:known chromosome:TAIR10:1:109032:111609:1 gene:AT1G01260 transcript:AT1G01260.1 // chr1 // 100 // 87 // 26 // 26 // 0 /// NM_001083971 // RefSeq // Arabidopsis thaliana transcription factor bHLH13 (AT1G01260) mRNA, complete cds. // chr1 // 100 // 50 // 15 // 15 // 0 /// AT1G01260.2 // ENSEMBL // cdna:known chromosome:TAIR10:1:109076:111535:1 gene:AT1G01260 transcript:AT1G01260.2 // chr1 // 100 // 50 // 15 // 15 // 0 /// AY120752 // GenBank // Arabidopsis thaliana transcription factor MYC7E, putative (At1g01260) mRNA, complete cds. // chr1 // 100 // 87 // 26 // 26 // 0 /// At1g01260 // The Institute for Genomic Research // 68414.t00034 basic helix-loop-helix (bHLH) family protein contains Pfam profile: PF00010 helix-loop-helix DNA-binding domain // chr1 // 100 // 87 // 26 // 26 // 0"
NM_001197954
AY120752 // Q9LNJ5 /// At1g01260 // Q9LNJ5
"NM_001197954 // GO:0006355 // regulation of transcription, DNA-dependent // traceable author statement /// NM_001197954 // GO:0009694 // jasmonic acid metabolic process // inferred from reviewed computational analysis /// NM_001197954 // GO:0009753 // response to jasmonic acid stimulus // inferred from reviewed computational analysis /// AT1G01260.3 // GO:0006355 // regulation of transcription, DNA-dependent // traceable author statement /// AT1G01260.3 // GO:0009694 // jasmonic acid metabolic process // inferred from reviewed computational analysis /// AT1G01260.3 // GO:0009753 // response to jasmonic acid stimulus // inferred from reviewed computational analysis /// NM_100009 // GO:0006355 // regulation of transcription, DNA-dependent // traceable author statement /// NM_100009 // GO:0009694 // jasmonic acid metabolic process // inferred from reviewed computational analysis /// NM_100009 // GO:0009753 // response to jasmonic acid stimulus // inferred from reviewed computational analysis /// AT1G01260.1 // GO:0006355 // regulation of transcription, DNA-dependent // traceable author statement /// AT1G01260.1 // GO:0009694 // jasmonic acid metabolic process // inferred from reviewed computational analysis /// AT1G01260.1 // GO:0009753 // response to jasmonic acid stimulus // inferred from reviewed computational analysis /// NM_001083971 // GO:0006355 // regulation of transcription, DNA-dependent // traceable author statement /// NM_001083971 // GO:0009694 // jasmonic acid metabolic process // inferred from reviewed computational analysis /// NM_001083971 // GO:0009753 // response to jasmonic acid stimulus // inferred from reviewed computational analysis /// AT1G01260.2 // GO:0006355 // regulation of transcription, DNA-dependent // traceable author statement /// AT1G01260.2 // GO:0009694 // jasmonic acid metabolic process // inferred from reviewed computational analysis /// AT1G01260.2 // GO:0009753 // response to jasmonic acid stimulus // inferred from reviewed computational analysis /// AY120752 // GO:0006355 // regulation of transcription, DNA-dependent // traceable author statement /// AY120752 // GO:0009694 // jasmonic acid metabolic process // inferred from reviewed computational analysis /// AY120752 // GO:0009753 // response to jasmonic acid stimulus // inferred from reviewed computational analysis "
---
NM_001197954 // GO:0003677 // DNA binding // inferred from sequence or structural similarity /// NM_001197954 // GO:0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarity /// AT1G01260.3 // GO:0003677 // DNA binding // inferred from sequence or structural similarity /// AT1G01260.3 // GO:0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarity /// NM_100009 // GO:0003677 // DNA binding // inferred from sequence or structural similarity /// NM_100009 // GO:0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarity /// AT1G01260.1 // GO:0003677 // DNA binding // inferred from sequence or structural similarity /// AT1G01260.1 // GO:0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarity /// NM_001083971 // GO:0003677 // DNA binding // inferred from sequence or structural similarity /// NM_001083971 // GO:0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarity /// AT1G01260.2 // GO:0003677 // DNA binding // inferred from sequence or structural similarity /// AT1G01260.2 // GO:0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarity /// AY120752 // GO:0003677 // DNA binding // inferred from sequence or structural similarity /// AY120752 // GO:0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarity
---
1
main
13334260
chr1
+
112263
113947
20
"NM_100010 // CYP703A2 // cytochrome P450, family 703, subfamily A, polypeptide 2 // --- // 839470 /// AT1G01280.1 // CYP703A2 // cytochrome P450, family 703, subfamily A, polypeptide 2 // --- // 839470 /// BT022023 // CYP703A2 // cytochrome P450, family 703, subfamily A, polypeptide 2 // --- // 839470"
"NM_100010 // RefSeq // Arabidopsis thaliana cytochrome P450, family 703, subfamily A, polypeptide 2 (CYP703A2) mRNA, complete cds. // chr1 // 100 // 100 // 20 // 20 // 0 /// AT1G01280.1 // ENSEMBL // cdna:known chromosome:TAIR10:1:112263:113947:1 gene:AT1G01280 transcript:AT1G01280.1 // chr1 // 100 // 100 // 20 // 20 // 0 /// BT022023 // GenBank // Arabidopsis thaliana At1g01280 gene, complete cds. // chr1 // 90 // 100 // 18 // 20 // 0 /// At1g01280 // The Institute for Genomic Research // 68414.t00035 cytochrome P450 family protein similar to cytochrome P450 GB:BAA92894 GI:7339658 from [ Petunia hybrida] // chr1 // 100 // 100 // 20 // 20 // 0"
NM_100010
AT1G01280.1
BT022023 // Q9LNJ4 /// At1g01280 // Q9LNJ4
NM_100010 // GO:0010208 // pollen wall assembly // inferred from mutant phenotype /// NM_100010 // GO:0010584 // pollen exine formation // inferred from mutant phenotype /// NM_100010 // GO:0010584 // pollen exine formation // inferred from reviewed computational analysis /// NM_100010 // GO:0051791 // medium-chain fatty acid metabolic process // inferred from direct assay /// NM_100010 // GO:0051792 // medium-chain fatty acid biosynthetic process // inferred from direct assay /// NM_100010 // GO:0055114 // oxidation-reduction process // inferred from electronic annotation /// NM_100010 // GO:0080110 // sporopollenin biosynthetic process // inferred from mutant phenotype /// NM_100010 // GO:0080110 // sporopollenin biosynthetic process // traceable author statement /// AT1G01280.1 // GO:0010584 // pollen exine formation // inferred from mutant phenotype /// AT1G01280.1 // GO:0080110 // sporopollenin biosynthetic process // inferred from mutant phenotype /// AT1G01280.1 // GO:0010208 // pollen wall assembly // inferred from mutant phenotype /// AT1G01280.1 // GO:0051791 // medium-chain fatty acid metabolic process // inferred from direct assay /// AT1G01280.1 // GO:0051792 // medium-chain fatty acid biosynthetic process // inferred from direct assay /// AT1G01280.1 // GO:0010584 // pollen exine formation // inferred from reviewed computational analysis /// AT1G01280.1 // GO:0055114 // oxidation-reduction process // inferred from electronic annotation /// AT1G01280.1 // GO:0080110 // sporopollenin biosynthetic process // traceable author statement /// BT022023 // GO:0010208 // pollen wall assembly // inferred from mutant phenotype /// BT022023 // GO:0010584 // pollen exine formation // inferred from mutant phenotype /// BT022023 // GO:0010584 // pollen exine formation // inferred from reviewed computational analysis /// BT022023 // GO:0051791 // medium-chain fatty acid metabolic process // inferred from direct assay /// BT022023 // GO:0051792 // medium-chain fatty acid biosynthetic process // inferred from direct assay /// BT022023 // GO:0055114 // oxidation-reduction process // inferred from electronic annotation /// BT022023 // GO:0080110 // sporopollenin biosynthetic process // inferred from mutant phenotype /// BT022023 // GO:0080110 // sporopollenin biosynthetic process // traceable author statement
AT1G01280.1 // GO:0012505 // endomembrane system // inferred from electronic annotation
"NM_100010 // GO:0005506 // iron ion binding // inferred from electronic annotation /// NM_100010 // GO:0009055 // electron carrier activity // inferred from electronic annotation /// NM_100010 // GO:0016705 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen // inferred from electronic annotation /// NM_100010 // GO:0016709 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen // inferred from direct assay /// NM_100010 // GO:0019825 // oxygen binding // inferred from sequence or structural similarity /// NM_100010 // GO:0020037 // heme binding // inferred from electronic annotation /// AT1G01280.1 // GO:0019825 // oxygen binding // inferred from sequence or structural similarity /// AT1G01280.1 // GO:0016709 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen // inferred from direct assay /// AT1G01280.1 // GO:0005506 // iron ion binding // inferred from electronic annotation /// AT1G01280.1 // GO:0009055 // electron carrier activity // inferred from electronic annotation /// AT1G01280.1 // GO:0016705 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen // inferred from electronic annotation /// AT1G01280.1 // GO:0020037 // heme binding // inferred from electronic annotation /// BT022023 // GO:0005506 // iron ion binding // inferred from electronic annotation /// BT022023 // GO:0009055 // electron carrier activity // inferred from electronic annotation /// BT022023 // GO:0016705 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen // inferred from electronic annotation /// BT022023 // GO:0016709 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen // inferred from direct assay /// BT022023 // GO:0019825 // oxygen binding // inferred from sequence or structural similarity /// BT022023 // GO:0020037 // heme binding // inferred from electronic annotation "
AT1G01280.1 // Pfam // IPR001128 // Cytochrome P450
1
main
13334264
chr1
+
114286
116108
23
NM_100011 // CNX3 // Molybdopterin biosynthesis protein CNX3 // --- // 839445 /// NM_001160827 // CNX3 // Molybdopterin biosynthesis protein CNX3 // --- // 839445 /// AT1G01290.1 // CNX3 // Molybdopterin biosynthesis protein CNX3 // --- // 839445 /// AT1G01290.2 // CNX3 // Molybdopterin biosynthesis protein CNX3 // --- // 839445 /// BT025641 // CNX3 // Molybdopterin biosynthesis protein CNX3 // --- // 839445
"NM_100011 // RefSeq // Arabidopsis thaliana Molybdopterin biosynthesis protein CNX3 (CNX3) mRNA, complete cds. // chr1 // 100 // 78 // 18 // 18 // 0 /// NM_001160827 // RefSeq // Arabidopsis thaliana Molybdopterin biosynthesis protein CNX3 (CNX3) mRNA, complete cds. // chr1 // 100 // 78 // 18 // 18 // 0 /// AT1G01290.1 // ENSEMBL // cdna:known chromosome:TAIR10:1:114286:115549:1 gene:AT1G01290 transcript:AT1G01290.1 // chr1 // 100 // 78 // 18 // 18 // 0 /// AT1G01290.2 // ENSEMBL // cdna:known chromosome:TAIR10:1:114286:116108:1 gene:AT1G01290 transcript:AT1G01290.2 // chr1 // 100 // 78 // 18 // 18 // 0 /// BT025641 // GenBank // Arabidopsis thaliana At1g01290 mRNA, complete cds. // chr1 // 100 // 39 // 9 // 9 // 0 /// At1g01290 // The Institute for Genomic Research // 68414.t00036 molybdopterin biosynthesis CNX3 protein / molybdenum cofactor biosynthesis enzyme CNX3 (CNX3) identical to molybdopterin biosynthesis CNX3 protein SP|Q39056 from [Arabidopsis thaliana] // chr1 // 100 // 78 // 18 // 18 // 0"
NM_100011
AT1G01290.1
NM_100011 // Q39056 /// BT025641 // Q1ECR4 /// BT025641 // Q39056 /// At1g01290 // Q39056
NM_100011 // GO:0006777 // Mo-molybdopterin cofactor biosynthetic process // inferred from electronic annotation /// NM_100011 // GO:0006777 // Mo-molybdopterin cofactor biosynthetic process // inferred from genetic interaction /// NM_001160827 // GO:0006777 // Mo-molybdopterin cofactor biosynthetic process // inferred from electronic annotation /// NM_001160827 // GO:0006777 // Mo-molybdopterin cofactor biosynthetic process // inferred from genetic interaction /// AT1G01290.1 // GO:0006777 // Mo-molybdopterin cofactor biosynthetic process // inferred from genetic interaction /// AT1G01290.1 // GO:0006777 // Mo-molybdopterin cofactor biosynthetic process // inferred from electronic annotation /// AT1G01290.2 // GO:0006777 // Mo-molybdopterin cofactor biosynthetic process // inferred from genetic interaction /// AT1G01290.2 // GO:0006777 // Mo-molybdopterin cofactor biosynthetic process // inferred from electronic annotation /// BT025641 // GO:0006777 // Mo-molybdopterin cofactor biosynthetic process // inferred from electronic annotation /// BT025641 // GO:0006777 // Mo-molybdopterin cofactor biosynthetic process // inferred from genetic interaction
NM_100011 // GO:0005739 // mitochondrion // inferred from sequence or structural similarity /// NM_100011 // GO:0009507 // chloroplast // inferred from sequence or structural similarity /// NM_001160827 // GO:0005739 // mitochondrion // inferred from sequence or structural similarity /// NM_001160827 // GO:0009507 // chloroplast // inferred from sequence or structural similarity /// AT1G01290.1 // GO:0005739 // mitochondrion // inferred from sequence or structural similarity /// AT1G01290.1 // GO:0009507 // chloroplast // inferred from sequence or structural similarity /// AT1G01290.2 // GO:0005739 // mitochondrion // inferred from sequence or structural similarity /// AT1G01290.2 // GO:0009507 // chloroplast // inferred from sequence or structural similarity /// BT025641 // GO:0005739 // mitochondrion // inferred from sequence or structural similarity /// BT025641 // GO:0009507 // chloroplast // inferred from sequence or structural similarity
NM_100011 // GO:0003824 // catalytic activity // inferred from genetic interaction /// NM_001160827 // GO:0003824 // catalytic activity // inferred from genetic interaction /// AT1G01290.1 // GO:0003824 // catalytic activity // inferred from genetic interaction /// AT1G01290.2 // GO:0003824 // catalytic activity // inferred from genetic interaction /// BT025641 // GO:0003824 // catalytic activity // inferred from genetic interaction
AT1G01290.1 // Pfam // IPR002820 // Molybdopterin cofactor biosynthesis C (MoaC) domain /// AT1G01290.2 // Pfam // IPR002820 // Molybdopterin cofactor biosynthesis C (MoaC) domain
1
main
13334270
chr1
+
116943
118764
25
NM_100012 // AT1G01300 // aspartyl protease-like protein // --- // 839375 /// AT1G01300.1 // AT1G01300 // aspartyl protease-like protein // --- // 839375 /// AY128344 // AT1G01300 // aspartyl protease-like protein // --- // 839375
"NM_100012 // RefSeq // Arabidopsis thaliana aspartyl protease-like protein (AT1G01300) mRNA, complete cds. // chr1 // 100 // 100 // 25 // 25 // 0 /// AT1G01300.1 // ENSEMBL // cdna:known chromosome:TAIR10:1:116943:118764:1 gene:AT1G01300 transcript:AT1G01300.1 // chr1 // 100 // 100 // 25 // 25 // 0 /// AY128344 // GenBank // Arabidopsis thaliana chloroplast nucleoid DNA binding protein, putative (At1g01300) mRNA, complete cds. // chr1 // 100 // 64 // 16 // 16 // 0 /// At1g01300 // The Institute for Genomic Research // 68414.t00037 aspartyl protease family protein contains Pfam domain, PF00026: eukaryotic aspartyl protease // chr1 // 100 // 100 // 25 // 25 // 0 /// BX818267 // GenBank HTC // Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL6ZE10 of Silique of strain col-0 of Arabidopsis thaliana (thale cress). // chr1 // 25 // 48 // 3 // 12 // 1"
NM_100012
AT1G01300.1
NM_100012 // Q8L9B9 /// NM_100012 // Q0WLZ1 /// AY128344 // Q9LNJ3 /// AY128344 // Q8L9B9 /// AY128344 // Q0WLZ1 /// At1g01300 // Q9LNJ3 /// At1g01300 // Q9LNJ3
NM_100012 // GO:0006508 // proteolysis // inferred from electronic annotation /// NM_100012 // GO:0006508 // proteolysis // inferred from sequence or structural similarity /// NM_100012 // GO:0009664 // plant-type cell wall organization // inferred from reviewed computational analysis /// NM_100012 // GO:0042545 // cell wall modification // inferred from reviewed computational analysis /// NM_100012 // GO:0080167 // response to karrikin // inferred from expression pattern /// AT1G01300.1 // GO:0006508 // proteolysis // inferred from sequence or structural similarity /// AT1G01300.1 // GO:0080167 // response to karrikin // inferred from expression pattern /// AT1G01300.1 // GO:0006508 // proteolysis // inferred from electronic annotation /// AT1G01300.1 // GO:0009664 // plant-type cell wall organization // inferred from reviewed computational analysis /// AT1G01300.1 // GO:0042545 // cell wall modification // inferred from reviewed computational analysis /// AY128344 // GO:0006508 // proteolysis // inferred from electronic annotation /// AY128344 // GO:0006508 // proteolysis // inferred from sequence or structural similarity /// AY128344 // GO:0009664 // plant-type cell wall organization // inferred from reviewed computational analysis /// AY128344 // GO:0042545 // cell wall modification // inferred from reviewed computational analysis /// AY128344 // GO:0080167 // response to karrikin // inferred from expression pattern
NM_100012 // GO:0009505 // plant-type cell wall // inferred from direct assay /// NM_100012 // GO:0016020 // membrane // inferred from direct assay /// AT1G01300.1 // GO:0016020 // membrane // inferred from direct assay /// AT1G01300.1 // GO:0009505 // plant-type cell wall // inferred from direct assay /// AY128344 // GO:0009505 // plant-type cell wall // inferred from direct assay /// AY128344 // GO:0016020 // membrane // inferred from direct assay
NM_100012 // GO:0004190 // aspartic-type endopeptidase activity // inferred from electronic annotation /// AT1G01300.1 // GO:0004190 // aspartic-type endopeptidase activity // inferred from electronic annotation /// AY128344 // GO:0004190 // aspartic-type endopeptidase activity // inferred from electronic annotation
AT1G01300.1 // Pfam // IPR001461 // Peptidase A1
1
main
13334274
chr1
+
119397
119997
23
NM_001123733 // AT1G01305 // hypothetical protein // --- // 6240609 /// AT1G01305.1 // AT1G01305 // hypothetical protein // --- // 6240609
"NM_001123733 // RefSeq // Arabidopsis thaliana uncharacterized protein (AT1G01305) mRNA, complete cds. // chr1 // 100 // 100 // 23 // 23 // 0 /// AT1G01305.1 // ENSEMBL // cdna:known chromosome:TAIR10:1:119397:119997:1 gene:AT1G01305 transcript:AT1G01305.1 // chr1 // 100 // 100 // 23 // 23 // 0"
NM_001123733
---
NM_001123733 // GO:0008150 // biological_process // no biological data available /// AT1G01305.1 // GO:0008150 // biological_process // no biological data available
AT1G01305.1 // GO:0012505 // endomembrane system // inferred from electronic annotation
NM_001123733 // GO:0003674 // molecular_function // no biological data available /// AT1G01305.1 // GO:0003674 // molecular_function // no biological data available
---
1
main
13334277
chr1
+
120154
121130
24
NM_100013 // AT1G01310 // allergen V5/Tpx-1-related family protein // --- // 839333 /// AT1G01310.1 // AT1G01310 // allergen V5/Tpx-1-related family protein // --- // 839333 /// NM_001197955 // AT1G01320 // tetratricopeptide repeat-containing protein // --- // 839293 /// AT1G01320.2 // AT1G01320 // tetratricopeptide repeat-containing protein // --- // 839293 /// BT014786 // AT1G01310 // allergen V5/Tpx-1-related family protein // --- // 839333
"NM_100013 // RefSeq // Arabidopsis thaliana allergen V5/Tpx-1-related family protein (AT1G01310) mRNA, complete cds. // chr1 // 100 // 100 // 24 // 24 // 0 /// AT1G01310.1 // ENSEMBL // cdna:known chromosome:TAIR10:1:120154:121130:1 gene:AT1G01310 transcript:AT1G01310.1 // chr1 // 100 // 100 // 24 // 24 // 0 /// NM_001197955 // RefSeq // Arabidopsis thaliana tetratricopeptide repeat-containing protein (AT1G01320) mRNA, complete cds. // chr1 // 100 // 4 // 1 // 1 // 0 /// AT1G01320.2 // ENSEMBL // cdna:known chromosome:TAIR10:1:121067:130577:-1 gene:AT1G01320 transcript:AT1G01320.2 // chr1 // 100 // 4 // 1 // 1 // 0 /// BT014786 // GenBank // Arabidopsis thaliana At1g01310 gene, complete cds. // chr1 // 100 // 79 // 19 // 19 // 0 /// At1g01310 // The Institute for Genomic Research // 68414.t00038 allergen V5/Tpx-1-related family protein similar to pathogenesis related protein-1 GB:AAC25629 GI:3290004 from [Zea mays]; contains Pfam profile PF00188: SCP-like extracellular protein // chr1 // 100 // 100 // 24 // 24 // 0"
NM_100013
AT1G01310.1
NM_001197955 // Q8H2C0 /// BT014786 // Q6ID87 /// At1g01310 // Q6ID87
NM_100013 // GO:0008150 // biological_process // no biological data available /// AT1G01310.1 // GO:0008150 // biological_process // no biological data available /// NM_001197955 // GO:0016556 // mRNA modification // inferred from reviewed computational analysis /// AT1G01320.2 // GO:0016556 // mRNA modification // inferred from reviewed computational analysis /// BT014786 // GO:0008150 // biological_process // no biological data available
NM_100013 // GO:0005576 // extracellular region // inferred from electronic annotation /// NM_100013 // GO:0005576 // extracellular region // inferred from sequence or structural similarity /// AT1G01310.1 // GO:0005576 // extracellular region // inferred from sequence or structural similarity /// AT1G01310.1 // GO:0005576 // extracellular region // inferred from electronic annotation /// BT014786 // GO:0005576 // extracellular region // inferred from electronic annotation /// BT014786 // GO:0005576 // extracellular region // inferred from sequence or structural similarity
NM_100013 // GO:0003674 // molecular_function // no biological data available /// AT1G01310.1 // GO:0003674 // molecular_function // no biological data available /// AT1G01320.2 // GO:0005515 // protein binding // inferred from electronic annotation /// AT1G01320.2 // GO:0005488 // binding // inferred from electronic annotation /// BT014786 // GO:0003674 // molecular_function // no biological data available
AT1G01310.1 // Pfam // IPR014044 // CAP domain /// AT1G01320.2 // Pfam // IPR001440 // Tetratricopeptide TPR-1 /// AT1G01320.2 // Pfam // IPR013105 // Tetratricopeptide TPR2
1
main
13334281
chr1
+
136124
138162
21
NM_100017 // AT1G01350 // zinc finger CCCH domain-containing protein 1 // --- // 838964 /// AT1G01350.1 // AT1G01350 // zinc finger CCCH domain-containing protein 1 // --- // 838964
"NM_100017 // RefSeq // Arabidopsis thaliana zinc finger CCCH domain-containing protein 1 (AT1G01350) mRNA, complete cds. // chr1 // 100 // 100 // 21 // 21 // 0 /// AT1G01350.1 // ENSEMBL // cdna:known chromosome:TAIR10:1:136124:138162:1 gene:AT1G01350 transcript:AT1G01350.1 // chr1 // 100 // 100 // 21 // 21 // 0 /// At1g01350 // The Institute for Genomic Research // 68414.t00041 zinc finger (CCCH-type/C3HC4-type RING finger) family protein similar to SP|O15541 Zinc finger protein 183 {Homo sapiens}; contains Pfam profiles PF04396: Protein of unknown function, DUF537, PF00097: Zinc finger, C3HC4 type (RING finger), PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar) // chr1 // 100 // 52 // 11 // 11 // 0"
NM_100017
AT1G01350.1
NM_100017 // C0SUR6 /// At1g01350 // Q8GX84
---
---
NM_100017 // GO:0003676 // nucleic acid binding // inferred from electronic annotation /// NM_100017 // GO:0003676 // nucleic acid binding // inferred from sequence or structural similarity /// NM_100017 // GO:0008270 // zinc ion binding // inferred from electronic annotation /// AT1G01350.1 // GO:0003676 // nucleic acid binding // inferred from electronic annotation /// AT1G01350.1 // GO:0008270 // zinc ion binding // inferred from electronic annotation /// AT1G01350.1 // GO:0003676 // nucleic acid binding // inferred from sequence or structural similarity
"AT1G01350.1 // Pfam // IPR000571 // Zinc finger, CCCH-type /// AT1G01350.1 // Pfam // IPR018957 // Zinc finger, C3HC4 RING-type"
1
main
Total number of rows: 38506 Table truncated, full table size 96689 Kbytes .
Supplementary data files not provided