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Platform GPL17521 Query DataSets for GPL17521
Status Public on Aug 02, 2013
Title Agilent-025384 Homo sapiens Xq28_2009
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Arrays of this design have barcodes that begin with 16025384 or 2525384.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Aug 01, 2013
Last update date Aug 02, 2013
Contact name James Lupski
E-mail(s) jluspki@bcm.tmc.edu
Organization name Baylor College of Medicine
Street address One Baylor Plaza, 604B
City Houston
ZIP/Postal code 77030
Country USA
 
Samples (22) GSM1199243, GSM1199244, GSM1199245, GSM1199246, GSM1199247, GSM1199248 
Series (2)
GSE49440 High-resolution custom array spanning Xq28 region to study patients carrying MECP2 copy number gain (part 1)
GSE49447 High-resolution custom array spanning Xq28 region to study patients carrying MECP2 copy number gain

Data table header descriptions
ID Agilent feature number
CONTROL_TYPE Control type
GB_ACC GenBankAccession
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION NCBI Build 36
CYTOBAND Cytoband
DESCRIPTION Description
SEQUENCE
SPOT_ID Spot identifier

Data table
ID CONTROL_TYPE GB_ACC GENE_SYMBOL GENE_NAME ACCESSION_STRING CHROMOSOMAL_LOCATION CYTOBAND DESCRIPTION SEQUENCE SPOT_ID
(-)3xSLv1 neg (-)3xSLv1
A_14_P100084 FALSE chrY:14687714-14687773 hs|q11.221 AATTTCAAAATGTGTTTAGTTCCAAGGAATTGGATTACTTGTGTATGTTTCATCTGGAGA A_14_P100084
A_14_P100278 FALSE NM_152522 ARL6IP6 ADP-ribosylation-like factor 6 interacting protein 6 ref|NM_152522|ref|NR_024526 chr2:153324487-153324546 hs|q23.3 "Homo sapiens ADP-ribosylation-like factor 6 interacting protein 6 (ARL6IP6), transcript variant 1, mRNA." GTGTTTTTCTTTTTTTCTAGGAAACTGACTGGACATTCTTTCCACATGGGCTATAGCATG A_14_P100278
A_14_P100351 FALSE NM_001719 BMP7 bone morphogenetic protein 7 ref|NM_001719 chr20:55259259-55259318 hs|q13.31 "Homo sapiens bone morphogenetic protein 7 (BMP7), mRNA." ACCAATAAACACAGATCTTAATCAGCAGGAGGCAATTTTCTAGTATAACAGGATTCGTCA A_14_P100351
A_14_P100425 FALSE NM_007125 UTY "ubiquitously transcribed tetratricopeptide repeat gene, Y-linked" ref|NM_007125 chrY:13870622-13870681 hs|q11.21 "Homo sapiens ubiquitously transcribed tetratricopeptide repeat gene, Y-linked (UTY), transcript variant 3, mRNA." GGAACCACAAATGTAATCATCATGGCCTCAAAACACACAAAAACATAAAGCAGTAAAAAA A_14_P100425
A_14_P100798 FALSE NM_001129765 NSDHL NAD(P) dependent steroid dehydrogenase-like ref|NM_001129765|ref|NM_015922 chrX:151788382-151788436 hs|q28 "Homo sapiens NAD(P) dependent steroid dehydrogenase-like (NSDHL), transcript variant 2, mRNA." ATGAAATAACATCCTTTGAATGAGTTTGCTCTGAGCCTGTGACTCCTTCTGCTAG A_14_P100798
A_14_P100809 FALSE NM_000361 THBD thrombomodulin ref|NM_000361 chr20:22975580-22975639 hs|p11.21 "Homo sapiens thrombomodulin (THBD), mRNA." TTGGGTGTAATTTCTATGACAGTCCAGCAACATCAATTTAATACCTTTTACATCTCAACC A_14_P100809
A_14_P100868 FALSE NM_001098538 PRR4 proline rich 4 (lacrimal) ref|NM_001098538|ref|NM_006250|ref|NM_023922 chr12:10982546-10982605 hs|p13.2 "Homo sapiens proline rich 4 (lacrimal) (PRR4), transcript variant 1, mRNA." GGAAAATCGTGTAAAGTTACTTGAATCAGAACTGCAAGTCTTGTTTCTTCTGTATCCATT A_14_P100868
A_14_P100894 FALSE NM_003842 TNFRSF10B "tumor necrosis factor receptor superfamily, member 10b" ref|NM_003842|ref|NM_147187|ref|NR_027140 chr8:22954412-22954471 hs|p21.3 "Homo sapiens tumor necrosis factor receptor superfamily, member 10b (TNFRSF10B), transcript variant 1, mRNA." TCCTCACTCTCCTCTTACTACAAAATGAAGTCCATGTGGCTCAATGACTTAATTACAAAA A_14_P100894
A_14_P101034 FALSE chrY:21444509-21444568 hs|q11.223 GATGATGTAATAAGAATAAACCCACATGCAGAGAATTATAAAACCAACAGAGACCAGGTC A_14_P101034
A_14_P101117 FALSE NM_001129765 NSDHL NAD(P) dependent steroid dehydrogenase-like ref|NM_001129765|ref|NM_015922 chrX:151753734-151753793 hs|q28 "Homo sapiens NAD(P) dependent steroid dehydrogenase-like (NSDHL), transcript variant 2, mRNA." TTTTCTTTCCCATATCACATCTTTGAATTCTGAAAGGGAGGCTTTATTGTTGTTCCTACA A_14_P101117
A_14_P101249 FALSE NM_000808 GABRA3 "gamma-aminobutyric acid (GABA) A receptor, alpha 3" ref|NM_000808 chrX:151144957-151145016 hs|q28 "Homo sapiens gamma-aminobutyric acid (GABA) A receptor, alpha 3 (GABRA3), mRNA." TTATATTGGACTCAACCTCTGCCATCCTTTTGGAGTTCTAATAAGTTGAGAAACTGGTTA A_14_P101249
A_14_P101353 FALSE NM_000117 EMD emerin ref|NM_000117 chrX:153262307-153262357 hs|q28 "Homo sapiens emerin (EMD), mRNA." GTGCATGATGACGATCTTTTGTCTTCTTCTGAAGAGGAGTGCAAGGATAGG A_14_P101353
A_14_P101375 FALSE NM_001289 CLIC2 chloride intracellular channel 2 ref|NM_001289 chrX:154188313-154188372 hs|q28 "Homo sapiens chloride intracellular channel 2 (CLIC2), mRNA." AAATTTAAATTTACATGAGATCTACCATGCTTTTTCTCTACGTGGTCTGGCTTTTCTGAT A_14_P101375
A_14_P101391 FALSE chrY:14833736-14833795 hs|q11.221 CATTTGTTGTATGAATGAATGAAAAGAACCCCACTGATTTTCCTTGCCACTATTTGACTT A_14_P101391
A_14_P101458 FALSE chrY:23283689-23283748 hs|q11.223 AAAATGCATTGTTCCCTTCAGAGACTTGTCTGGGTGTTTTAGTTATGCATAAGTAATTCT A_14_P101458
A_14_P101464 FALSE NM_080656 CDKN2AIPNL CDKN2A interacting protein N-terminal like ref|NM_080656|ref|NM_006930|ref|NM_170679 chr5:133537574-133537633 hs|q31.1 "Homo sapiens CDKN2A interacting protein N-terminal like (CDKN2AIPNL), mRNA." TATCTCTCCATCAGAACTCTGCAACTTAATTGAAGGCATCTAAAAAAAAAGGACATTAAA A_14_P101464
A_14_P101526 FALSE NM_001007792 NTRK1 "neurotrophic tyrosine kinase, receptor, type 1" ref|NM_001007792|ref|NM_001012331|ref|NM_002529 chr1:155113698-155113757 hs|q23.1 "Homo sapiens neurotrophic tyrosine kinase, receptor, type 1 (NTRK1), transcript variant 3, mRNA." TATTGCAATTTACACTTGAAGCAAGTTACAAAAAATTCATTTCTTTGGCTTCGGACAGAA A_14_P101526
A_14_P101576 FALSE chr4:182690730-182690789 hs|q35.1 ACAAAACACCCTATTTGAGTATATCTTATACTTGTATCAAGTCTTTCTGAGTGTGCCCCT A_14_P101576
A_14_P101577 FALSE NM_018070 SSBP3 single stranded DNA binding protein 3 ref|NM_018070|ref|NM_145716|ref|NM_001009955 chr1:54641811-54641870 hs|p32.3 "Homo sapiens single stranded DNA binding protein 3 (SSBP3), transcript variant 2, mRNA." GAGGTTGGCAGAAGTAATTAAAAACTCATTTTCTCTGCACAAGTTAGAACAGACACTTCA A_14_P101577

Total number of rows: 42710

Table truncated, full table size 8143 Kbytes.




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Supplementary file Size Download File type/resource
GPL17521_025384_D_GEO_20091118.txt.gz 2.2 Mb (ftp)(http) TXT

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