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Platform GPL17880 Query DataSets for GPL17880
Status Public on Nov 06, 2013
Title Agilent-032491 3D7v7.1_transcriptome
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Plasmodium falciparum
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Arrays of this design have barcodes that begin with 16032491 or 2532491.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Nov 04, 2013
Last update date Sep 12, 2016
Contact name Bjorn FC Kafsack
Organization name Weill Cornell Medicine
Department Microbiology & Immunology
Street address 1300 York Avenue
City New York
State/province NY
ZIP/Postal code 10065
Country USA
 
Samples (48) GSM1257812, GSM1257813, GSM1257814, GSM1257815, GSM1257816, GSM1257817 
Series (2)
GSE52030 Comparison of Gametocyte producer 3D7-A subclone E5 to the gametotcyte nonprodcer strain F12 and pfap2-g deletion mutant
GSE59015 Gene expression analysis of a double knockout of TCA cycle enzymes IDH and KDH
Relations
Alternative to GPL18267

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
NAME NAME
SPOT_ID Spot identifier
CONTROL_TYPE Control type
ORF ORF Name
CHROMOSOMAL_LOCATION
DESCRIPTION
SEQUENCE Sequence

Data table
ID COL ROW NAME SPOT_ID CONTROL_TYPE ORF CHROMOSOMAL_LOCATION DESCRIPTION SEQUENCE
1 96 164 GE_BrightCorner GE_BrightCorner pos
2 96 162 DarkCorner DarkCorner pos
3 96 160 DarkCorner DarkCorner pos
4 96 158 PF14_0264_v7.1_P6/7 PF14_0264_v7.1_P6/7 FALSE PF14_0264 unmapped protein kinase, putative TTATGATGATAAAAATGGAGAACATGAAAAAGGTGATAAGGCTGATGATACAAGTAGTTC
5 96 156 PF13_0192_v7.1_P2/2 PF13_0192_v7.1_P2/2 FALSE PF13_0192 unmapped conserved Plasmodium protein, unknown function CAAATGAACATGAACCACGTCCGATGATAACAACATCCAGATATGAAAATAAAATATCAA
6 96 154 PFF0150C_v7.1_P2/2 PFF0150C_v7.1_P2/2 FALSE PFF0150c unmapped conserved Plasmodium protein, unknown function TTAAATAATAATCAATGTGGAAATGTGTATAATGGAATAAATGGTGGAAGTATTGACAAT
7 96 152 MAL13P1.133_v7.1_P5/16 MAL13P1.133_v7.1_P5/16 FALSE MAL13P1.133 unmapped conserved Plasmodium membrane protein, unknown function TATGATTAAAAAGGAACATGTGGAACATACTAAAGGATATGAATCGAAGGGTTTTTCTTC
8 96 150 PFF0630C-A_v7.1_P1/1 PFF0630C-A_v7.1_P1/1 FALSE PFF0630c-a unmapped conserved Plasmodium protein, unknown function CTACAAGTTATATATGAATAGCGTGCCTCAATTCTCAACCTTTGTATATGGAAAGAATAT
9 96 148 MAL13P1.264_v7.1_P1/2 MAL13P1.264_v7.1_P1/2 FALSE MAL13P1.264 unmapped conserved Plasmodium protein, unknown function AGATGAAAAAATGTTAGGAGTAGGTCTGGAAAATGGAGAAATTGAATTGATTGGTATGTT
10 96 146 PF11_0465_v7.1_P2/3 PF11_0465_v7.1_P2/3 FALSE PF11_0465 unmapped dynamin-like protein TAGAGTAAGTCAGACACTAGAAATTTTATCCCAAAAAATAGCCAACAGAGTATTAAATCG
11 96 144 PF14_0264_v7.1_P4/7 PF14_0264_v7.1_P4/7 FALSE PF14_0264 unmapped protein kinase, putative ATTGAAAACATGATACACACTGAACGTATACATGATAAGGAATCTAAAGAAGAAGATATC
12 96 142 PFF0525W_v7.1_P1/1 PFF0525W_v7.1_P1/1 FALSE PFF0525w unmapped conserved Plasmodium protein, unknown function TAAGTGATGATTCACTAAAACAAAACGAAATGTTTACACGTGCAAATGTATCTGGAAGTA
13 96 140 PFE0360C_v7.1_P2/3 PFE0360C_v7.1_P2/3 FALSE PFE0360c unmapped conserved Plasmodium protein, unknown function CAAATCTTAAATCTATGTATCAAGATAATTTGCCAGTGAATTATAACGAGGAGGATCATG
14 96 138 PFF0765C_v7.1_P3/4 PFF0765C_v7.1_P3/4 FALSE PFF0765c unmapped conserved Plasmodium protein, unknown function AAACATATAGACAAAAATAATTATTTCGGAGATAACCAAACTAGCGCCACCGTTACATTT
15 96 136 PF13_0155_v7.1_P6/8 PF13_0155_v7.1_P6/8 FALSE PF13_0155 unmapped conserved Plasmodium protein, unknown function AAGAGGGAACAAATCATGATAACAAAAATAAGTGGAATAATTATGAAATGGAAAAAGATG
16 96 134 PFA0160C_v7.1_P2/2 PFA0160C_v7.1_P2/2 FALSE PFA0160c unmapped nucleoside transporter, putative TCACATGATTCCGAATAAGCTGAAGAAGAACGTATATTACAAATACCTGTTTATGTTTCT
17 96 132 PFC0875W_v7.1_P6/9 PFC0875W_v7.1_P6/9 FALSE PFC0875w unmapped ABC transporter, putative GATGTAGAAACGTTGGAGACAAGAAATGATACGGATGTTAATAAAGAAGTGGAAATTAAT
18 96 130 PF14_0684_v7.1_P2/2 PF14_0684_v7.1_P2/2 FALSE PF14_0684 unmapped conserved Plasmodium protein, unknown function GAACAATGATATGTTTACATGTCCTATGAAAAAAGAGAAACCGATTGATGCTTATAAGAA
19 96 128 PF11_0288_v7.1_P1/2 PF11_0288_v7.1_P1/2 FALSE PF11_0288 unmapped conserved Plasmodium protein, unknown function GCATAATGACGATACAGCTATTCAAGAGATACATATAGTAGAGGAAAAGAAATTTCTCAT
20 96 126 PFF0975C_v7.1_P2/2 PFF0975C_v7.1_P2/2 FALSE PFF0975c unmapped conserved Plasmodium protein, unknown function AGTAACAATATCAAAATTAGACGATTTTCTCCATGAATGCTCAAAGGTAAAACCTGAAGA

Total number of rows: 15744

Table truncated, full table size 2653 Kbytes.




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Supplementary file Size Download File type/resource
GPL17880_GEO_032491_D_GEO_20110208.txt.gz 691.9 Kb (ftp)(http) TXT

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