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Platform GPL18368 Query DataSets for GPL18368
Status Public on Mar 04, 2014
Title [ChiGene-1_0-st] Affymetrix Chicken Gene 1.0 ST Array [probeset version]
Technology type in situ oligonucleotide
Distribution commercial
Organism Gallus gallus
Manufacturer Affymetrix
Manufacture protocol See manufacturer's web site
 
Description Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html

#%create_date=Mon Apr 15 11:23:16 2013 PDT
#%chip_type=ChiGene-1_0-st-v1
#%lib_set_name=ChiGene-1_0-st
#%lib_set_version=v1
#%genome-species=Gallus gallus
#%genome-version=galgal3
#%genome-version-ucsc=galgal3
#%genome-version-create_date=2006-05-00
#%genome-lifted-method=NONE
#%genome-lifted_from-species=Gallus gallus
#%genome-lifted_from-version-ucsc=galgal3
#%netaffx-annotation-date=2012-09-15
#%netaffx-annotation-netaffx-build=33
#%netaffx-annotation-tabular-data-version=1.1
#%netaffx-annotation-tabular-format-version=1.1
#%netaffx-annotation-data-type=probe_set
#%netaffx-annotation-docgen-method=module:affy/annotation_update/builder; exec:create-download-file.pl
#%netaffx-annotation-docgen-version=8487
#%netaffx-annotation-url-transcript=www.affymetrix.com/analysis/netaffx/gene/transcript.affx?pk=
#%netaffx-annotation-url-mrna=www.affymetrix.com/analysis/netaffx/gene/rna.affx?pk=
 
Submission date Mar 04, 2014
Last update date Mar 04, 2014
Organization Affymetrix, Inc.
E-mail(s) geo@ncbi.nlm.nih.gov, support@affymetrix.com
Phone 888-362-2447
URL http://www.affymetrix.com/index.affx
Street address
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Samples (78) GSM1339278, GSM1339279, GSM1339280, GSM1339281, GSM1339282, GSM1339283 
Series (2)
GSE55570 Gene expression data of two different strains of laying hens from a small group housing system
GSE269154 Effects of a biotechnologically produced Pleurotus sapidus mycelium on gut microbiome, liver transcriptome and plasma metabolome of broilers

Data table header descriptions
ID
seqname
strand
start
stop
probe_count
transcript_cluster_id
exon_id
psr_id
gene_assignment
mrna_assignment
crosshyb_type
number_independent_probes
number_cross_hyb_probes
number_nonoverlapping_probes
level
bounded
noBoundedEvidence
has_cds
fl
mrna
est
vegaGene
vegaPseudoGene
ensGene
sgpGene
exoniphy
twinscan
geneid
genscan
genscanSubopt
mouse_fl
mouse_mrna
rat_fl
rat_mrna
microRNAregistry
rnaGene
mitomap
probeset_type
GB_ACC Representative GenBank Accession number
SPOT_ID

Data table
ID seqname strand start stop probe_count transcript_cluster_id exon_id psr_id gene_assignment mrna_assignment crosshyb_type number_independent_probes number_cross_hyb_probes number_nonoverlapping_probes level bounded noBoundedEvidence has_cds fl mrna est vegaGene vegaPseudoGene ensGene sgpGene exoniphy twinscan geneid genscan genscanSubopt mouse_fl mouse_mrna rat_fl rat_mrna microRNAregistry rnaGene mitomap probeset_type GB_ACC SPOT_ID
15384043 chr1 + 33977 34001 1 15384042 1226917 951112 CR352480 // GOLGB1 /// ENSGALT00000015914 // GOLGB1 CR352480 // chr1 // 100 // 1 // 1 // 0 /// ENSGALT00000015914 // chr1 // 100 // 1 // 1 // 0 1 0 0 1 --- 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 main CR352480 CR352480 // GOLGB1 /// ENSGALT00000015914 // GOLGB1
15384044 chr1 + 35226 35250 1 15384042 1226918 951116 CR352480 // GOLGB1 /// ENSGALT00000015914 // GOLGB1 CR352480 // chr1 // 100 // 1 // 1 // 0 /// ENSGALT00000015914 // chr1 // 100 // 1 // 1 // 0 1 0 0 1 --- 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 main CR352480 CR352480 // GOLGB1 /// ENSGALT00000015914 // GOLGB1
15384047 chr1 + 38686 38710 1 15384042 1226921 951122 CR352480 // GOLGB1 /// ENSGALT00000015914 // GOLGB1 CR352480 // chr1 // 100 // 1 // 1 // 0 /// ENSGALT00000015914 // chr1 // 100 // 1 // 1 // 0 1 0 0 1 --- 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 main CR352480 CR352480 // GOLGB1 /// ENSGALT00000015914 // GOLGB1
15384049 chr1 + 42447 42471 1 15384042 1226926 951132 ENSGALT00000015914 // GOLGB1 ENSGALT00000015914 // chr1 // 100 // 1 // 1 // 0 1 0 0 1 --- 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 main ENSGALT00000015914 // GOLGB1
15384050 chr1 + 45319 45343 1 15384042 1226927 951134 ENSGALT00000015914 // GOLGB1 ENSGALT00000015914 // chr1 // 100 // 1 // 1 // 0 1 0 0 1 --- 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 main ENSGALT00000015914 // GOLGB1
15384058 chr1 + 60864 60888 1 15384042 1226940 951160 ENSGALT00000015914 // GOLGB1 ENSGALT00000015914 // chr1 // 100 // 1 // 1 // 0 1 0 0 1 --- 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 main ENSGALT00000015914 // GOLGB1
15384060 chr1 + 63161 63185 1 15384042 1226942 951164 ENSGALT00000015914 // GOLGB1 ENSGALT00000015914 // chr1 // 100 // 1 // 1 // 0 1 0 0 1 --- 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 main ENSGALT00000015914 // GOLGB1
15384061 chr1 + 63433 63457 1 15384042 1226943 951166 ENSGALT00000015914 // GOLGB1 ENSGALT00000015914 // chr1 // 100 // 1 // 1 // 0 1 0 0 1 --- 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 main ENSGALT00000015914 // GOLGB1
15384064 chr1 + 66026 66050 1 15384042 1226946 951172 ENSGALT00000015914 // GOLGB1 ENSGALT00000015914 // chr1 // 100 // 1 // 1 // 0 1 0 0 1 --- 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 main ENSGALT00000015914 // GOLGB1
15384065 chr1 + 66418 66442 1 15384042 1226946 951174 ENSGALT00000015914 // GOLGB1 ENSGALT00000015914 // chr1 // 100 // 1 // 1 // 0 1 0 0 1 --- 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 main ENSGALT00000015914 // GOLGB1
15384068 chr1 + 71502 71528 1 15384066 1226949 951179 NM_001031401 // HCLS1 /// ENSGALT00000015903 // HCLS1 NM_001031401 // chr1 // 100 // 1 // 1 // 0 /// ENSGALT00000015903 // chr1 // 100 // 1 // 1 // 0 1 0 0 0 --- 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 main NM_001031401 NM_001031401 // HCLS1 /// ENSGALT00000015903 // HCLS1
15384073 chr1 + 78480 78533 1 15384066 1226954 951191 NM_001031401 // HCLS1 /// ENSGALT00000015903 // HCLS1 NM_001031401 // chr1 // 100 // 1 // 1 // 0 /// ENSGALT00000015903 // chr1 // 100 // 1 // 1 // 0 1 0 0 2 --- 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 main NM_001031401 NM_001031401 // HCLS1 /// ENSGALT00000015903 // HCLS1
15384074 chr1 + 78705 78736 1 15384066 1226955 951193 NM_001031401 // HCLS1 /// ENSGALT00000015903 // HCLS1 NM_001031401 // chr1 // 100 // 1 // 1 // 0 /// ENSGALT00000015903 // chr1 // 100 // 1 // 1 // 0 1 0 0 0 --- 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 main NM_001031401 NM_001031401 // HCLS1 /// ENSGALT00000015903 // HCLS1
15384075 chr1 + 79623 79667 2 15384066 1226957 951197 NM_001031401 // HCLS1 /// ENSGALT00000015903 // HCLS1 NM_001031401 // chr1 // 100 // 2 // 2 // 0 /// ENSGALT00000015903 // chr1 // 100 // 2 // 2 // 0 1 0 0 0 --- 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 main NM_001031401 NM_001031401 // HCLS1 /// ENSGALT00000015903 // HCLS1
15384076 chr1 + 79920 79964 2 15384066 1226958 951199 NM_001031401 // HCLS1 /// ENSGALT00000015903 // HCLS1 NM_001031401 // chr1 // 100 // 2 // 2 // 0 /// ENSGALT00000015903 // chr1 // 100 // 2 // 2 // 0 1 0 0 0 --- 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 main NM_001031401 NM_001031401 // HCLS1 /// ENSGALT00000015903 // HCLS1
15384077 chr1 + 80602 80658 2 15384066 1226959 951201 NM_001031401 // HCLS1 /// ENSGALT00000015903 // HCLS1 NM_001031401 // chr1 // 100 // 2 // 2 // 0 /// ENSGALT00000015903 // chr1 // 100 // 2 // 2 // 0 1 0 0 2 --- 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 main NM_001031401 NM_001031401 // HCLS1 /// ENSGALT00000015903 // HCLS1
15384080 chr1 + 82499 82552 1 15384066 1226962 951207 NM_001031401 // HCLS1 /// ENSGALT00000015903 // HCLS1 NM_001031401 // chr1 // 100 // 1 // 1 // 0 /// ENSGALT00000015903 // chr1 // 100 // 1 // 1 // 0 1 0 0 2 --- 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 main NM_001031401 NM_001031401 // HCLS1 /// ENSGALT00000015903 // HCLS1
15384083 chr1 + 99130 99168 2 15384082 1226964 951212 BX930967 // RABL2B BX930967 // chr1 // 100 // 2 // 2 // 0 1 0 0 0 --- 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 main BX930967 BX930967 // RABL2B
15384084 chr1 + 99270 99300 1 15384082 1226965 951214 ENSGALT00000015890 // RABL2B ENSGALT00000015890 // chr1 // 100 // 1 // 1 // 0 /// GENSCAN00000039681 // chr1 // 100 // 1 // 1 // 0 1 0 0 0 --- 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 main ENSGALT00000015890 // RABL2B
15384086 chr1 + 100469 100497 1 15384082 1226967 951218 BX930967 // RABL2B BX930967 // chr1 // 100 // 1 // 1 // 0 1 0 0 0 --- 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 main BX930967 BX930967 // RABL2B

Total number of rows: 165995

Table truncated, full table size 37799 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided
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