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Platform GPL18892 Query DataSets for GPL18892
Status Public on Jul 01, 2016
Title Agilent-029586 Haloferax mediterranei 15K array
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Haloferax mediterranei
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Arrays of this design have barcodes that begin with 16029586 or 2529586.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

 
Submission date Jul 03, 2014
Last update date Jul 01, 2016
Contact name Julia Esclapez
E-mail(s) julia.esclapez@ua.es
Phone 0034 96 590 3400
Organization name University of Alicante
Department Biochemistry
Lab María José Bonete
Street address Crta San Vicente del Raspeig s/n
City San Vicente del Raspeig
State/province Alicante
ZIP/Postal code 03690
Country Spain
 
Samples (24) GSM1439368, GSM1439369, GSM1439370, GSM1439371, GSM1439372, GSM1439373 
Series (3)
GSE59551 Transcriptional profiles of Haloferax mediterranei based on nitrogen availability
GSE135303 Transcriptional analysis of glnA deletion mutant in Haloferax mediterranei
GSE244624 Analysis of Lsm protein-mediated regulation in the haloarchaeon Haloferax mediterranei

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
NAME NAME
SPOT_ID Spot identifier
locus_tag
CONTROL_TYPE Control type
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
SEQUENCE Sequence

Data table
ID COL ROW NAME SPOT_ID locus_tag CONTROL_TYPE ACCESSION_STRING CHROMOSOMAL_LOCATION SEQUENCE
1 96 164 GE_BrightCorner GE_BrightCorner pos
2 96 162 DarkCorner DarkCorner pos
3 96 160 DarkCorner DarkCorner pos
4 96 158 CUST_1754_PI425426162 CUST_1754_PI425426162 BM92_02955 FALSE ctg2_00583 unmapped AGTTCGGCGTCTTCTTCGAGAAGAACGAACCCGACGAGGACGGCAACTACATGTTCACCC
5 96 156 CUST_604_PI425426162 CUST_604_PI425426162 BM92_00965 FALSE ctg2_00200 unmapped CTTGACTTCGTGACCGAAGAGTACCTCCCGACCCGTCTCGACGAGATGGGCATTATCTAA
6 96 154 CUST_1183_PI425426162 CUST_1183_PI425426162 BM92_01960 FALSE ctg2_00393 unmapped TATGGTGCGTTGACTCGTGCGCTCGGACCGTCCGTCCAGAGGCTCATCGGTGGTGAATAA
7 96 152 CUST_455_PI425426162 CUST_455_PI425426162 BM92_00730 FALSE ctg2_00150c unmapped CATCATCACGACCGAACCGAACGACCTCATCTCGGAGTTACATCACCGGATGGCCGTCAT
8 96 150 CUST_2401_PI425426162 CUST_2401_PI425426162 BM92_04020 FALSE ctg2_00800 unmapped ACTCGGATTCACTCGGCCCGTTGCTATCGACCTCTTCGGACTCGTGATTTGTCCCCTTAT
9 96 148 CUST_2393_PI425426162 CUST_2393_PI425426162 BM92_04000 FALSE ctg2_00797 unmapped GTTCCGATGGAAAACTGGTTGCAGGTCCGCATCGAGGCGGGTGAGATGAACTACGAAGGA
10 96 146 CUST_10729_PI425426162 CUST_10729_PI425426162 FALSE ctg400064 unmapped TTCTGTTCGGAGAAATGCCGGTCCGAGTATTTCGACGAACCGATAGCGGCTGACAACTGA
11 96 144 CUST_3545_PI425426162 CUST_3545_PI425426162 FALSE ctg2_01181 unmapped ATTCAAGAGATGCAACAACAACAACAGGGCATCGCGAGCGACGACGACCTGCGGTACATC
12 96 142 CUST_6614_PI425426162 CUST_6614_PI425426162 BM92_11075 FALSE ctg2_02208 unmapped TGAGATTCACGTCCTTTCTGTCCCCGACGACATGACCGAACAGGCCGTCGAAGACATCCT
13 96 140 CUST_10941_PI425426162 CUST_10941_PI425426162 BM92_18505 FALSE ctg400134 unmapped AATCTACACCGTCATGGCTACGCTACTCGACGAACCCGACGATTCGGTCTACGCTCGACT
14 96 138 CUST_11690_PI425426162 CUST_11690_PI425426162 BM92_19885 FALSE ctg5_00118c unmapped GATCTATCGACGGGTCGACGAACTCTGTGACTGTGATCTGCTTATCGAGCGAACGCGACC
15 96 136 CUST_1428_PI425426162 CUST_1428_PI425426162 BM92_02345 FALSE ctg2_00474 unmapped AAATACGGAGTCTAATCCCGACGAGTCGTGGACAGAGACGACCGAGATGGGTGACTTCGA
16 96 134 CUST_9477_PI425426162 CUST_9477_PI425426162 BM92_15915 FALSE ctg3_00086c unmapped AACCTCAAGATTGACCACTTCCGCGAGCAGTCGCTCGACGTCGAGGAGAAAGTCGACATG
17 96 132 CUST_10001_PI425426162 CUST_10001_PI425426162 BM92_16825 FALSE ctg3_00261c unmapped TACCTCGACGCCAAGGGAATTTCGACCGGGGTGTACTACCCGAAACCGGTTCACAAGCAA
18 96 130 CUST_5629_PI425426162 CUST_5629_PI425426162 BM92_09405 FALSE ctg2_01880 unmapped CTTACGCCTTCGCTCTCAGCGATTACTTCGTACGCGCTGTTCTCTTCGGGCGTTATCTAG
19 96 128 CUST_6344_PI425426162 CUST_6344_PI425426162 BM92_10620 FALSE ctg2_02118 unmapped AGTACTCCGACGCCGTCTACTTTCCTGACCGGTTTATGTTCGTTTACATCCTACTTTTTA
20 96 126 CUST_1539_PI425426162 CUST_1539_PI425426162 BM92_02535 FALSE ctg2_00511c unmapped CTCTACCCGAATCTCGATGACCTCGTGGAGATGGACGTCGTTGAGAAGGGCGAAATCGAC

Total number of rows: 15744

Table truncated, full table size 2275 Kbytes.




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Supplementary file Size Download File type/resource
GPL18892_029586_D_GEO_20100728.txt.gz 952.8 Kb (ftp)(http) TXT

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