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Status
Public on Jul 01, 2016
Title
Agilent-029586 Haloferax mediterranei 15K array
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Haloferax mediterranei
Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Description
Arrays of this design have barcodes that begin with 16029586 or 2529586. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
Submission date
Jul 03, 2014
Last update date
Jul 01, 2016
Contact name
Julia Esclapez
E-mail(s)
julia.esclapez@ua.es
Phone
0034 96 590 3400
Organization name
University of Alicante
Department
Biochemistry
Lab
María José Bonete
Street address
Crta San Vicente del Raspeig s/n
City
San Vicente del Raspeig
State/province
Alicante
ZIP/Postal code
03690
Country
Spain
Samples (24)
GSM1439368 , GSM1439369 , GSM1439370 , GSM1439371 , GSM1439372 , GSM1439373
GSM1439374 ,
GSM1439375 ,
GSM4003129 ,
GSM4003130 ,
GSM4003131 ,
GSM4003132 ,
GSM4003133 ,
GSM4003134 ,
GSM4003135 ,
GSM4003136 ,
GSM7822306 ,
GSM7822307 ,
GSM7822308 ,
GSM7822309 ,
GSM7822310 ,
GSM7822311 ,
GSM7822312 ,
GSM7822313
Series (3)
GSE59551
Transcriptional profiles of Haloferax mediterranei based on nitrogen availability
GSE135303
Transcriptional analysis of glnA deletion mutant in Haloferax mediterranei
GSE244624
Analysis of Lsm protein-mediated regulation in the haloarchaeon Haloferax mediterranei
Data table header descriptions
ID
Agilent feature number
COL
Column
ROW
Row
NAME
NAME
SPOT_ID
Spot identifier
locus_tag
CONTROL_TYPE
Control type
ACCESSION_STRING
Accession String
CHROMOSOMAL_LOCATION
Chromosomal Location
SEQUENCE
Sequence
Data table
ID
COL
ROW
NAME
SPOT_ID
locus_tag
CONTROL_TYPE
ACCESSION_STRING
CHROMOSOMAL_LOCATION
SEQUENCE
1
96
164
GE_BrightCorner
GE_BrightCorner
pos
2
96
162
DarkCorner
DarkCorner
pos
3
96
160
DarkCorner
DarkCorner
pos
4
96
158
CUST_1754_PI425426162
CUST_1754_PI425426162
BM92_02955
FALSE
ctg2_00583
unmapped
AGTTCGGCGTCTTCTTCGAGAAGAACGAACCCGACGAGGACGGCAACTACATGTTCACCC
5
96
156
CUST_604_PI425426162
CUST_604_PI425426162
BM92_00965
FALSE
ctg2_00200
unmapped
CTTGACTTCGTGACCGAAGAGTACCTCCCGACCCGTCTCGACGAGATGGGCATTATCTAA
6
96
154
CUST_1183_PI425426162
CUST_1183_PI425426162
BM92_01960
FALSE
ctg2_00393
unmapped
TATGGTGCGTTGACTCGTGCGCTCGGACCGTCCGTCCAGAGGCTCATCGGTGGTGAATAA
7
96
152
CUST_455_PI425426162
CUST_455_PI425426162
BM92_00730
FALSE
ctg2_00150c
unmapped
CATCATCACGACCGAACCGAACGACCTCATCTCGGAGTTACATCACCGGATGGCCGTCAT
8
96
150
CUST_2401_PI425426162
CUST_2401_PI425426162
BM92_04020
FALSE
ctg2_00800
unmapped
ACTCGGATTCACTCGGCCCGTTGCTATCGACCTCTTCGGACTCGTGATTTGTCCCCTTAT
9
96
148
CUST_2393_PI425426162
CUST_2393_PI425426162
BM92_04000
FALSE
ctg2_00797
unmapped
GTTCCGATGGAAAACTGGTTGCAGGTCCGCATCGAGGCGGGTGAGATGAACTACGAAGGA
10
96
146
CUST_10729_PI425426162
CUST_10729_PI425426162
FALSE
ctg400064
unmapped
TTCTGTTCGGAGAAATGCCGGTCCGAGTATTTCGACGAACCGATAGCGGCTGACAACTGA
11
96
144
CUST_3545_PI425426162
CUST_3545_PI425426162
FALSE
ctg2_01181
unmapped
ATTCAAGAGATGCAACAACAACAACAGGGCATCGCGAGCGACGACGACCTGCGGTACATC
12
96
142
CUST_6614_PI425426162
CUST_6614_PI425426162
BM92_11075
FALSE
ctg2_02208
unmapped
TGAGATTCACGTCCTTTCTGTCCCCGACGACATGACCGAACAGGCCGTCGAAGACATCCT
13
96
140
CUST_10941_PI425426162
CUST_10941_PI425426162
BM92_18505
FALSE
ctg400134
unmapped
AATCTACACCGTCATGGCTACGCTACTCGACGAACCCGACGATTCGGTCTACGCTCGACT
14
96
138
CUST_11690_PI425426162
CUST_11690_PI425426162
BM92_19885
FALSE
ctg5_00118c
unmapped
GATCTATCGACGGGTCGACGAACTCTGTGACTGTGATCTGCTTATCGAGCGAACGCGACC
15
96
136
CUST_1428_PI425426162
CUST_1428_PI425426162
BM92_02345
FALSE
ctg2_00474
unmapped
AAATACGGAGTCTAATCCCGACGAGTCGTGGACAGAGACGACCGAGATGGGTGACTTCGA
16
96
134
CUST_9477_PI425426162
CUST_9477_PI425426162
BM92_15915
FALSE
ctg3_00086c
unmapped
AACCTCAAGATTGACCACTTCCGCGAGCAGTCGCTCGACGTCGAGGAGAAAGTCGACATG
17
96
132
CUST_10001_PI425426162
CUST_10001_PI425426162
BM92_16825
FALSE
ctg3_00261c
unmapped
TACCTCGACGCCAAGGGAATTTCGACCGGGGTGTACTACCCGAAACCGGTTCACAAGCAA
18
96
130
CUST_5629_PI425426162
CUST_5629_PI425426162
BM92_09405
FALSE
ctg2_01880
unmapped
CTTACGCCTTCGCTCTCAGCGATTACTTCGTACGCGCTGTTCTCTTCGGGCGTTATCTAG
19
96
128
CUST_6344_PI425426162
CUST_6344_PI425426162
BM92_10620
FALSE
ctg2_02118
unmapped
AGTACTCCGACGCCGTCTACTTTCCTGACCGGTTTATGTTCGTTTACATCCTACTTTTTA
20
96
126
CUST_1539_PI425426162
CUST_1539_PI425426162
BM92_02535
FALSE
ctg2_00511c
unmapped
CTCTACCCGAATCTCGATGACCTCGTGGAGATGGACGTCGTTGAGAAGGGCGAAATCGAC
Total number of rows: 15744 Table truncated, full table size 2275 Kbytes .
Supplementary file
Size
Download
File type/resource
GPL18892_029586_D_GEO_20100728.txt.gz
952.8 Kb
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