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Platform GPL19152 Query DataSets for GPL19152
Status Public on Sep 03, 2014
Title M1, M3, M18 GAS Array
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Streptococcus pyogenes
Manufacturer Not provided
Manufacture protocol Not provided
 
Description oligonucleotide array containing unique ORFs rom M1, M3 and M18 Streptococcus pyogenes
 
Submission date Sep 03, 2014
Last update date Sep 03, 2014
Contact name Yoann Le Breton
E-mail(s) lebreton@umd.edu
Phone (301) 405-7514
Organization name University of Maryland
Department Cell Biology and Molecular Genetics
Street address 3217 Bioscience Research Building (413)
City College Park
State/province Maryland
ZIP/Postal code 20742
Country USA
 
Samples (9) GSM1504114, GSM1504115, GSM1504116, GSM1504117, GSM1504118, GSM1504119 
Series (2)
GSE61415 Streptococcus pyogenes MGAS5005: control vs heme exposure
GSE108748 Comparison of gene expression in the GAS M1T1 strain 5448, wild-type vs pepO mutant
Relations
Alternative to GPL1482

Data table header descriptions
ID
ORF Spy Number; Comparable ORF# from Oklahoma Sequencing Project
SEQUENCE Oligo sequence 5'-3' of probe spotted onto arrays
ORF length full-length of ORF within genome
5'end from ORF start # of bp between 5' ORF and 5' probe
3'end from ORF start # of bp between 5' ORF and 3' probe
Bases from 3'end # of bp between 5' probe and 3' ORF
Tm melting temperature of probe
GC % GC content of probe
M1 Cross hybrid. identity next closest identity within genome of probe
M1 contiguous bases common to another sequence # of bp within probe that are contiguous to another sequence within M1 genome
M3 Cross hybrid. identity % identity of probe to M3 genome
M3 contiguous bases common to another sequence # of bp within probe that are contiguous to another sequence within M3 genome
M18 Cross hybrid. identity % identity of probe to M18 genome
M18 contiguous bases common to another sequence # of bp within probe that are contiguous to another sequence within M18 genome

Data table
ID ORF SEQUENCE ORF length 5'end from ORF start 3'end from ORF start Bases from 3'end Tm GC M1 Cross hybrid. identity M1 contiguous bases common to another sequence M3 Cross hybrid. identity M3 contiguous bases common to another sequence M18 Cross hybrid. identity M18 contiguous bases common to another sequence
NT01SP0001 CTGTTAATTTGGGTTCTCCACAACCTGTGGAAAAGCCATTTTAAGGGGACACCGCTATTGTTTTCAACTA 105 19 88 87 74.74 41.43 38 14 48 14 48 14
NT01SP0002 SPy0002 GACCATTCAACAGTACTCCATGCCTATAATAAAATCAAAAACATGATCAGCCAGGACGAAAGCCTTAGGA 1353 1252 1321 102 74.16 40 40 15 100 70 100 70
NT01SP0003 SPy0003 CTTATCACCAGTTCGACCATTCACCCTAACACCAGGCGATGAGGAAGAAAGTTTTATCCAATTAATTACA 1134 1050 1119 85 74.16 40 34 12 100 70 100 70
NT01SP0004 SPy0004 TAACTGTCAGCATGTGATTATGATGAGTCGTTATGATTTTGAGCGAAAATTAAAAAAAGTACTGCAACCA 195 126 195 70 71.23 32.86 44 16 100 70 100 70
NT01SP0005 TAGCTATTCTAATGTTATCGAAAGAAGAAAGATGGCCATTGACAATGACGAAAGTTGTAGCACAGTTACT 93 24 93 70 72.4 35.71 42 14 41 14 42 14
NT01SP0006 CATTTGGTAAGCCTACAATACCTGCTGTTAAAGCCATTTAGCGAATCTCCATTCAAATTTCAATCAAGAT 114 13 82 102 72.4 35.71 40 14 44 14 100 70
NT01SP0007 SPy0006 AAAGAGGTTCGTGCTTGGACGTTTAAGCGTGGTATAAAAGCTCCACAAGCTGCTGGTATTATCCATTCAG 1113 886 955 228 75.91 44.29 40 15 100 70 100 70
NT01SP0008 SPy0007 TATTAACCATGTGATGGGCCAATTCAATACCGAAGATAATATTGCTATTTCGTTAACTCTTGACAGAGTT 567 432 501 136 71.81 34.29 35 16 98 39 98 64
NT01SP0009 SPy0008 GTTCCAACCACAGTCTTGGCCCAGCAGCATTATGAAAACTTCAAAGCACGCTTTGAAAATTACCCTGTTG 3417 1915 1984 1503 75.91 44.29 38 15 98 52 100 70
NT01SP0010 SPy0009 GGTATCGCGCCTTATTAAACGTCGTTCAGTAGCAAAAGAAGTTGCGGATAAGGGACGAATTAAAGTTAAT 270 24 93 247 74.16 40 40 13 100 70 100 70
NT01SP0011 SPy0010 TGCTAGGGCAAAATACTATTTATCGCGTGAAGGAGAAATGATTTATCCTATTCCAGGACTATTACCAAAA 369 300 369 70 72.4 35.71 41 13 100 70 100 70
NT01SP0012 TTCTTGCTTTTTCTGATAAAAAATTAGCAGAGCTGCAACAGGAAAATCAAAAAGTTAAAGAAGAAAGTCA 123 38 107 86 70.06 30 54 14 54 14 100 70
NT01SP0013 SPy0012 GCTTTCCGCTCAGAGATAAAAGCTTTATCAGGTATCGATTGGGATATGGAGCAGCGCTTATTAACTTCTC 1284 952 1021 333 75.33 42.86 35 16 100 70 100 70
NT01SP0014 SPy0013 TGATGAGGCTAATTAGAGGAAGCCGATTGAGGCACTTGTCGGGTATAAAAAGCGTGCAACCATTTGCCAA 1185 290 359 896 76.5 45.71 34 13 100 70 98 37
NT01SP0015 ATATTCCAAATGAATTTATCGTAGGCTTTGGTTTAGATTACGCAGAAAATTATCGCAATCTTCCTTACGT 429 329 398 101 71.23 32.86 45 14 100 70 100 70
NT01SP0016 SPy0015 TTGGTTTAGTTTTATCTAATGCGCGTGTAGTTCACAAGGTAACTATTGTACCTCGTGGACGAGCAGGTGG 1977 1367 1436 611 75.91 44.29 37 13 100 70 100 70
NT01SP0017 SPy0016 TGCTACTCTTGTCACTGGACTACTTGCTATGATTTGTGCGGGAATATTTCCTTTATCGAGTCTAGCAGAG 1389 1062 1131 328 75.33 42.86 44 14 100 70 100 70
NT01SP0018 AGAGTTGACAATGACAGTAAAGATATCGTATACTAATAAAGCTGTCAGAGAGGTTCCTGTAACACACTTA 153 51 120 103 72.4 35.71 85 60 42 14 84 36
NT01SP0020 SPy0019 GTGGTTATGGACATGTCGCCGTTGTAGTTGAGGTTCAAAGTGCCTCAAGTATTCGTGTGATGGAGTCTAA 1194 1049 1118 146 76.5 45.71 37 12 100 70 100 70
NT01SP0021 SPy0020 GCAACAGCTGTGTATGCGTCATGTACGCATCCCGTTCTTTCTGGACCAGCACTTGATAATATTCAACGTT 960 733 802 228 76.5 45.71 32 13 100 70 100 70

Total number of rows: 2329

Table truncated, full table size 307 Kbytes.




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