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Series GSE108748 Query DataSets for GSE108748
Status Public on Jan 05, 2018
Title Comparison of gene expression in the GAS M1T1 strain 5448, wild-type vs pepO mutant
Organism Streptococcus pyogenes
Experiment type Expression profiling by array
Summary Manuscript title: The endopeptidase PepO regulates the SpeB cysteine protease and is essential for the virulence of invasive M1T1 Streptococcus pyogenes.
The study investigates the effect of pepO mutation on global gene expression in GAS M1T1 strain 5448.
 
Overall design Two-condition experiment, GAS M1T1 strain 5448 WT vs. pepO mutant. Biological replicates: 3, independently grown and harvested. One replicate of each strain per array.
 
Contributor(s) Brouwer S, Cork AJ, Ong CL, Barnett TC, West NP, McIver KS, Walker MJ
Citation(s) 29378883
Submission date Jan 04, 2018
Last update date Apr 08, 2018
Contact name Stephan Brouwer
E-mail(s) s.brouwer@uq.edu.au
Organization name The University of Queensland
Department School of Chemistry and Molecular Biosciences
Lab Walker Lab
Street address Cooper Road, Building 76, Rm 151
City St Lucia
State/province QLD
ZIP/Postal code 4072
Country Australia
 
Platforms (1)
GPL19152 M1, M3, M18 GAS Array
Samples (3)
GSM2912915 GAS 5448 WT vs pepO, rep1
GSM2912916 GAS 5448 WT vs pepO, rep2
GSM2912917 GAS 5448 WT vs pepO, rep3
Relations
BioProject PRJNA428486

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE108748_RAW.tar 13.0 Mb (http)(custom) TAR (of TXT, XLSX)
Processed data included within Sample table
Processed data provided as supplementary file

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