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Platform GPL1932 Query DataSets for GPL1932
Status Public on Dec 31, 2005
Title S. pombe 10K long oligonucleotide array
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Schizosaccharomyces pombe
 
Description Spotted long oligonucleotide array on glass
This set includes 9,858 oligonucleotides that represent 4,929 genes based on S. pombe genome (Sanger Center, UK, November 2001)
Keywords = Spotted, 50-mer oligonucleotides
 
Web link http://giscompute.gis.a-star.edu.sg/~gisljh/OligoArray
Contributor(s) Miller LD, Li J, Liu J
Submission date Mar 28, 2005
Last update date Jan 18, 2013
Contact name Jianhua Liu
E-mail(s) liujh@gis.a-star.edu.sg
Organization name Genome Institute of Singapore
Street address 60 Biopolis Street
City Singapore
ZIP/Postal code 138672
Country Singapore
 
Samples (499) GSM46430, GSM46431, GSM46432, GSM46433, GSM46434, GSM46435 
Series (10)
GSE2453 Independent repeat hybridizations
GSE4280 HU treated cells vs wildtype untreated cells (asynchronized cells)
GSE4283 HU treated cells vs wildtype untreated cells (elutriation centrifugation synchronized cells)

Data table header descriptions
ID
ORF Systematic name
Gene Symbol gene symbol when available
Dist3' Oligonucleotide position to its 3'-end of the gene
MinHD The minimal Hamming distance
GC Number of GC nucleotide (50 in total)
SEQUENCE Oligonucleotide sequence

Data table
ID ORF Gene Symbol Dist3' MinHD GC SEQUENCE
c1348_1000011 SPBC1348.01 225 21 24 AGCCCTGGGTGCAACTATAACTGGCCTTTTGTATTTTGGTCATTGGGCTC
c1348_1000012 SPBC1348.01 138 21 23 TGTGACACCAGGAGACGTCTGTGTTTCTAACACTCTTCCTACACATAACG
c1348_1000021 SPBC1348.02 954 20 24 GGGATCATTTGCATATTCTGGTAACTCGGAATCGGTATGGACGGGCGAAA
c1348_1000022 SPBC1348.02 66 20 23 CACCCATAATGAAGCACTTGCCTACAATCGAAATGTAGCTGAAGAGGCTC
c1348_1000031 SPBC1348.03 69 21 21 CTCGAAAACCGATATTAGTGATCTGCACCAGGGCTATAATAATCCACCAT
c1348_1000032 SPBC1348.03 84 18 21 CAAGAATCATTCTTACTCGAAAACCGATATTAGTGATCTGCACCAGGGCT
c1348_1000041 SPBC1348.04 84 20 24 CAAATCACGTTATAGACGGTGGCAGGGCCATAAAAGGTATTCCCTCGCTT
c1348_1000042 SPBC1348.04 77 20 23 CGTTATAGACGGTGGCAGGGCCATAAAAGGTATTCCCTCGCTTTAAAAAG
c1348_1000051 SPBC1348.05 744 20 23 AGGAGAAAATGAACCAGTAGCGTTGCGTCTCACAGGTAAGCAACTGCTTA
c1348_1000052 SPBC1348.05 747 20 23 AATAGGAGAAAATGAACCAGTAGCGTTGCGTCTCACAGGTAAGCAACTGC
c1348_1000061 SPBC1348.06c 78 21 25 TAACGAGGAAGGCATGCCAAGTTGGTGTCAGCCCATTGAACTTACACCAG
c1348_1000062 SPBC1348.06c 81 21 23 TAATAACGAGGAAGGCATGCCAAGTTGGTGTCAGCCCATTGAACTTACAC
c1348_1000071 SPBC1348.07 240 20 23 GATCAGTATAGTTATAGCAGCGGTCGTAGTAATTATCGCGGTGGCTATGG
c1348_1000072 SPBC1348.07 245 20 23 CCATTGATCAGTATAGTTATAGCAGCGGTCGTAGTAATTATCGCGGTGGC
c1348_1000081 SPBC1348.08c 60 20 23 ATTCTTACCATTTGGTCAAGGTAATGGCGGTGTAAACGGGCCAACGGAAA
c1348_1000082 SPBC1348.08c 65 21 23 CAACAATTCTTACCATTTGGTCAAGGTAATGGCGGTGTAAACGGGCCAAC
c1348_1000091 SPBC1348.09 132 20 25 GCAAGCGGCAACGGATGAAAGTGATGAGCTACGATACCCTACTGGAGATT
c1348_1000092 SPBC1348.09 135 21 25 ATTGCAAGCGGCAACGGATGAAAGTGATGAGCTACGATACCCTACTGGAG
c1348_1000101 SPAC977.09c 66 21 24 AGCATCAGCCACTCCCACTCATAAACATTGGTGGGACTCGATTTTCGAAG
c1348_1000102 SPAC977.09c 69 20 24 TGTAGCATCAGCCACTCCCACTCATAAACATTGGTGGGACTCGATTTTCG

Total number of rows: 9858

Table truncated, full table size 865 Kbytes.






Download family Format
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Supplementary data files not provided

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