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Platform GPL19654 Query DataSets for GPL19654
Status Public on May 20, 2015
Title Agilent-036227 Schizosaccharomyces pombe sp40c [ProbeName version]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Schizosaccharomyces pombe
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Tm optimized 75C

Arrays of this design have barcodes that begin with 16036227 or 2536227.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Probe Name.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Jan 14, 2015
Last update date May 22, 2015
Contact name Tamas Fischer
E-mail(s) tamas.fischer@bzh.uni-heidelberg.de
Phone +49 6221 544728
Organization name Biochemie Zentrum Heidelebrg
Department BZH
Lab AG Fischer
Street address Im Neuenheimer Feld 328
City Heidelberg
ZIP/Postal code 69120
Country Germany
 
Samples (29) GSM1585463, GSM1585464, GSM1585465, GSM1585466, GSM1585467, GSM1585468 
Series (7)
GSE64979 The fission yeast MTREC complex targets CUTs and unspliced mRNAs to the nuclear exosome [expression array]
GSE64980 The fission yeast MTREC complex targets CUTs and unspliced mRNAs to the nuclear exosome [RIP-ChIP]
GSE64992 The fission yeast MTREC complex targets CUTs and unspliced mRNAs to the nuclear exosome

Data table header descriptions
ID
SEQUENCE
CHROMOSOMAL_LOCATION
Fw
Chr
Start
End

Data table
ID SEQUENCE CHROMOSOMAL_LOCATION Fw Chr Start End
sp40c_1 AAAATTCGGGTAAAATAATTTAAAAAAGAAAAAGAAAGAAAGATGAAACTATCAGAAA mat:1-60 TRUE mat 1 60
sp40c_3 TAAATTAAAATATGCTTAGTGCGATTATTAATTACGGTTTAAAGTGTAGATTGC mat:81-140 TRUE mat 81 140
sp40c_5 AACATTTCGTTGTACAATAATCCCTAATTTGTATATAACGTAATGTAAGGT mat:161-220 TRUE mat 161 220
sp40c_7 TTGCGACCCTTAACTATTATGTAAATAAATCCCGGTTCG mat:241-300 TRUE mat 241 300
sp40c_9 TGATGGATAAATAGTATAGCTCTTTCGATTATAGAAAGCCATTCAC mat:321-380 TRUE mat 321 380
sp40c_11 CTATTTAAATGTCTTATAATGCTGCTACGAACAGCTTTAGGGT mat:401-460 TRUE mat 401 460
sp40c_13 TGTTAAAAAGAATTAAATATTTGTTGTGATGGTTTTATTTAAGGATCTTCTTACCC mat:481-540 TRUE mat 481 540
sp40c_15 CTAACTAAAGCATTAAAAAATATCGCTGTATAGGCATCCTTTACCA mat:561-620 TRUE mat 561 620
sp40c_17 CTTTATTGATGGAATATTACGAATCAAACACAGATGTAGGTGCT mat:641-700 TRUE mat 641 700
sp40c_19 ATACATAACTGCAACTCAGCATGTGGAACAGGAG mat:721-780 TRUE mat 721 780
sp40c_21 AATTACTGGTGTCTAAACAACCTAACTTGATTTTTTAAATTCTACTACAATATTTC mat:801-860 TRUE mat 801 860
sp40c_23 TAAATTTTATATCATAATACAATTATCAGGTATTTGAGAGAAACAGCCAGTGC mat:881-940 TRUE mat 881 940
sp40c_25 TTTGCATTCAATCTGTCTTGAGCTCAACGTTGGTATA mat:961-1020 TRUE mat 961 1020
sp40c_27 TCAAACAAAACAAAGAAGTTTGGTTTGTAAATCCGTAAAAATTGC mat:1041-1100 TRUE mat 1041 1100
sp40c_29 GAGAAACTCAATTCTCTCGACAAATAAATGTGAATTTGAGCAAA mat:1121-1180 TRUE mat 1121 1180
sp40c_31 ACTTAGACGGTTCGTACTGGTGCCCAGGAC mat:1201-1260 TRUE mat 1201 1260
sp40c_33 CCATTACGTCTTTACCTACTCATATTTTTAGCAATTATTCCAATTCATC mat:1281-1340 TRUE mat 1281 1340
sp40c_35 AAATCATATAGAAGTAATATGTTTTATATTCGCATATACATTTGTATAACTCTTGACTTT mat:1361-1420 TRUE mat 1361 1420
sp40c_37 AAAATAAGTATAAATTCTTTAGCTAGTAGATCAAAAAATTGGATTGTTTTCATATGCT mat:1441-1500 TRUE mat 1441 1500
sp40c_39 AGAATGCAGATGAATTCATCATTACCATGTTAATGTAAAAGAGC mat:1521-1580 TRUE mat 1521 1580

Total number of rows: 174063

Table truncated, full table size 17134 Kbytes.




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Supplementary file Size Download File type/resource
GPL19654_sp40c_036227_D_GEO_20110830.txt.gz 1.6 Mb (ftp)(http) TXT

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