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Platform GPL19750 Query DataSets for GPL19750
Status Public on May 30, 2015
Title Agilent-032611 Shirasu-JK001 [Probe Name Version]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Phtheirospermum japonicum
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description The sequences used to design the probes for this array came from an RNA-Seq study of Phtheirospermum japonicum. The sample used for RNA-Seq is accessioned in NCBI's BioSample database: SAMN03271814.
 
Submission date Feb 06, 2015
Last update date Jun 01, 2015
Contact name Juliane Karine Ishida
E-mail(s) julianeishida@gmail.com
Phone +81455039574
Organization name RIKEN
Department CSRS
Lab Plant Immunity Research Group
Street address 1-7-22 Suehiro-cho, Tsurumi-ku
City Yokohama
State/province Kanagawa
ZIP/Postal code 230-0045
Country Japan
 
Samples (16) GSM1603812, GSM1603813, GSM1603814, GSM1603815, GSM1603816, GSM1603817 
Series (1)
GSE65723 Root transcriptome of the facultative parasitic plant Phtheirospermum japonicum

Data table header descriptions
ID Agilent probe name
CONTROL_TYPE
ACCESSION_STRING
SEQUENCE
SPOT_ID

Data table
ID CONTROL_TYPE ACCESSION_STRING SEQUENCE SPOT_ID
GE_BrightCorner pos GE_BrightCorner
DarkCorner pos DarkCorner
CUST_17288_PI426107926 FALSE Pj3contig_20514; ACAATCACGAACAATCCTAGTTCGTTCGAACTTTGGGGACTCATTTGTAATTAAAAATGT CUST_17288_PI426107926
CUST_22817_PI426107926 FALSE Pj3contig_27266; CCTCTGGGCTCAGGCATGGACCCGCGCGGTGACTGTTGTAACTAACTACCCTTTACGAAA CUST_22817_PI426107926
CUST_30116_PI426107926 FALSE Pj3contig_36981; GCCGGTTGTCTGGCTGTAAATGGCGAGCATGTAGTAGTCTAATCGTTGGGGGGATGCGAA CUST_30116_PI426107926
CUST_25155_PI426107926 FALSE Pj3contig_30214; AATTCTTGAGAAATCGACACGACTATCGAAGGCAGACCGCAAACCCATGAAGAATTTTCA CUST_25155_PI426107926
CUST_46608_PI426107926 FALSE Pj3contig_56319; GGTGAAGCAATTGGGATCACAGACTTTATAAATCCAAAGGATTTGGACAAGCCAGTACAC CUST_46608_PI426107926
CUST_10198_PI426107926 FALSE Pj3contig_12962 AACTCTAGATGAACACAGAATGCATTTTGAGAAGGATAAGGCTTTGGCTCGCCGCTTCCA CUST_10198_PI426107926
CUST_1774_PI426107926 FALSE Pj3contig_2087 CCACGACGAATCAAATGACTTCAACTGCAATGAACTGTACTAATTTATAGTTCAGTAACT CUST_1774_PI426107926
CUST_24112_PI426107926 FALSE Pj3contig_28845; AGGGGGCCTAGGCGTCACCCACCTAAGAATAATTGAGCATATATTATAATCATTATTATA CUST_24112_PI426107926
CUST_15858_PI426107926 FALSE Pj3contig_18992; TTTGTCAAGGTGGTCAACTCGGTGGTCAAGCCTGAGAGGCTGGAGCGCTTTGACGTCATC CUST_15858_PI426107926
CUST_3170_PI426107926 FALSE Pj3contig_3661; GTTCAATCGCTATTCTAAGCACAAACAGATTCAACTGCAGATGAAAAGGCAAAAATGATA CUST_3170_PI426107926
CUST_5041_PI426107926 FALSE Pj3contig_5861 TTTACAACTCTGGTTGGCAGTGACATATTACTGAAGCAAAACAGACCAGCACTCGTCGTT CUST_5041_PI426107926
CUST_8875_PI426107923 FALSE Contig322903; GTCATGTACTTGTATTGAGAGGAAGACGTGATTTATTTGTCTTGATTGTTTACCTTGAGG CUST_8875_PI426107923
CUST_27637_PI426107926 FALSE Pj3contig_33719 TTTCGATCTTCAAATCCGATCCAATGTTCGGATTGAAGTTGCTCTTCGGTCCCAACGTTC CUST_27637_PI426107926
CUST_19937_PI426107926 FALSE Pj3contig_23654; CTCGAAGTCAGCGCAACATTTAAACTGATATTATATAAATACTCATAGTATCCCCGGCCC CUST_19937_PI426107926
CUST_10251_PI426107923 FALSE Contig353278; AAATCAAGAACTCAGGCTTTACCAAAGCAAGGTTCAGGAAGCGGAATGCCAGCATATGCA CUST_10251_PI426107923
CUST_26267_PI426107926 FALSE Pj3contig_31792 ATATCAGACTACTTGATGTTCCAAAGTTGACAGTTGCCGCCCTCAGATTCACCGAAACTG CUST_26267_PI426107926
CUST_1207_PI426107926 FALSE Pj3contig_1406 AAGTTGAGGCCTTTGCCTGAAGCTATCGCCATGGATTCTTAGCAGCTGCTTAACTTTTTT CUST_1207_PI426107926
CUST_27254_PI426107926 FALSE Pj3contig_33189; ATAGTCCCCATGGCGACTCCAAAAAGCACATTCATAAGGGAAAGATGGCGCACAAATAAG CUST_27254_PI426107926

Total number of rows: 58440

Table truncated, full table size 7298 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL19750_032611_D_Fasta_20110215.txt.gz 1.4 Mb (ftp)(http) TXT
GPL19750_032611_D_GEO_20110215.txt.gz 2.3 Mb (ftp)(http) TXT

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