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| Status |
Public on May 31, 2015 |
| Title |
Root transcriptome of the facultative parasitic plant Phtheirospermum japonicum |
| Organism |
Phtheirospermum japonicum |
| Experiment type |
Expression profiling by array
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| Summary |
47,984 unigenes with putative coding regions with at least 50 amino acids were selected from whole transcriptome (SAMN03271814) of Phtheirospermum japonicum
Microarray slides were hybridized with labeled cRNA from roots of 2-week-old Phtheirospermum japonicum plants growing axenically and treated with haustoria-inducer DMBQ (10 µM) for 0, 0.5, 1, 3, 6, 12, 24 and 48 h
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| Overall design |
In this study the expression data from three biological replicates of each time-point are presented. In addition, one single biological replication of a mock-treated sample for each time-point. As a control of the background and uneven hybridization, ten probes for randomly selected fifty unrelated sequences were designed and fixed in different locations of the array
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| Contributor(s) |
Ishida JK, Satoko Y |
| Citation(s) |
27385817 |
| |
| Submission date |
Feb 06, 2015 |
| Last update date |
Jun 12, 2019 |
| Contact name |
Juliane Karine Ishida |
| E-mail(s) |
julianeishida@gmail.com
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| Phone |
+81455039574
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| Organization name |
RIKEN
|
| Department |
CSRS
|
| Lab |
Plant Immunity Research Group
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| Street address |
1-7-22 Suehiro-cho, Tsurumi-ku
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| City |
Yokohama |
| State/province |
Kanagawa |
| ZIP/Postal code |
230-0045 |
| Country |
Japan |
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| Platforms (2) |
| GPL19750 |
Agilent-032611 Shirasu-JK001 [Probe Name Version] |
| GPL19751 |
Agilent-034168 Shirasu-JK002-13May2011 [Probe Name Version] |
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| Samples (32)
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| Relations |
| BioProject |
PRJNA274795 |
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