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Platform GPL19751 Query DataSets for GPL19751
Status Public on May 31, 2015
Title Agilent-034168 Shirasu-JK002-13May2011 [Probe Name Version]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Phtheirospermum japonicum
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description The sequences used to design the probes for this array came from an RNA-Seq study of Phtheirospermum japonicum. The sample used for RNA-Seq is accessioned in NCBI's BioSample database: SAMN03271814.
 
Submission date Feb 06, 2015
Last update date May 31, 2015
Contact name Juliane Karine Ishida
E-mail(s) julianeishida@gmail.com
Phone +81455039574
Organization name RIKEN
Department CSRS
Lab Plant Immunity Research Group
Street address 1-7-22 Suehiro-cho, Tsurumi-ku
City Yokohama
State/province Kanagawa
ZIP/Postal code 230-0045
Country Japan
 
Samples (16) GSM1603828, GSM1603829, GSM1603830, GSM1603831, GSM1603832, GSM1603833 
Series (1)
GSE65723 Root transcriptome of the facultative parasitic plant Phtheirospermum japonicum

Data table header descriptions
ID Agilent probe name
CONTROL_TYPE
ACCESSION_STRING
SEQUENCE
SPOT_ID

Data table
ID CONTROL_TYPE ACCESSION_STRING SEQUENCE SPOT_ID
GE_BrightCorner pos GE_BrightCorner
DarkCorner pos DarkCorner
CUST_8213_PI426107926 FALSE Pj3contig_9966 GTTAAGGGGATGGAAGTGCAATTTACTTTTGGCATGTATATTACTACGTTTTGCATTACA CUST_8213_PI426107926
CUST_23498_PI426107926 FALSE Pj3contig_28136 TGCCTAATGACTCTTGAATGGAAGTTCTGTTTTGTTCAGGAAACTTCCCTTCCTTTCCCC CUST_23498_PI426107926
CUST_39854_PI426107926 FALSE Pj3contig_47979; GAAGTTAGTTCTTCGATAGAATGCTTAATCGGAATCGTCATCATCGTCGGATTCATCGTC CUST_39854_PI426107926
CUST_33985_PI426107926 FALSE Pj3contig_41062; TCTCGACGACAATGAACACTACAGCTATCGGATCTCCTGAAGAGTCTTCTGCTCTTCTAA CUST_33985_PI426107926
CUST_10547_PI426107926 FALSE Pj3contig_13457 ATACTGAGAATTTTCTTTTAGCAGTACCCTTTATCGGTTCCAACTTGACGATCCTGAATC CUST_10547_PI426107926
CUST_2962_PI426429976 FALSE Pj3contig_15111; GGTGAAAGCATGAATATTTCAGGGGTAACATGCAACAGACAAGAATTTAGTAGTCCAGGG CUST_2962_PI426429976
CUST_32534_PI426107926 FALSE Pj3contig_39563 GCCTTCGTATGCCTTTGATTTGTAATTTGGGTTTGGCTCTATATCAAATGTATATTGGTA CUST_32534_PI426107926
CUST_32216_PI426107926 FALSE Pj3contig_39241; ATCAAAATGGGAATCATGTCATTCAGAAATGCATCGAATGTGTTCCCGAGGAGAATATTC CUST_32216_PI426107926
CUST_46745_PI426107926 FALSE Pj3contig_56487 TTATGGTAGGTAATCAGATGCGCGGTTGCTCTGGCATAGCTTTCATTGTTTTAGCACGGA CUST_46745_PI426107926
CUST_4298_PI426107926 FALSE Pj3contig_5008; AGGGAGAGAGATCGAAGTAACAGGGGGAAAATAATTTTGATTGTGTATTGTCTACTCTTC CUST_4298_PI426107926
CUST_43485_PI426107926 FALSE Pj3contig_52544; ATTTTGGCCCGCAAGTACAACCAGGACAAGATGATCTGCCGCAAGTGCTATGCCCGCCTG CUST_43485_PI426107926
CUST_5907_PI426429976 FALSE Pj3contig_37620; TTGATTTGCTTGGTTTTAGCATTGAACTCAATAGTTATGAAAGGGGCACAGAGGCGCAAA CUST_5907_PI426429976
CUST_7099_PI426429976 FALSE Pj3contig_38970; CCTCCTTGTATCCCAAGGTTCATTTTTCGTCTCCACGTTGTGAAGAAATTACGTGCATGG CUST_7099_PI426429976
CUST_47383_PI426107926 FALSE Pj3contig_57384; CTGTCTCGGTGAGGGGCGTGCGGCTGCTGTAATTTTAATTGTGTTAAAAGGAGACTCGCA CUST_47383_PI426107926
CUST_20369_PI426107926 FALSE Pj3contig_24197 TAACCGATACGTTGCTCGCTACAGTGGAAACTGCGGCGGAGTTGGTGCATGCCAGCGAAT CUST_20369_PI426107926
CUST_3877_PI426429976 FALSE Pj3contig_16408 GAGATCTTGGATACTCTCTCAACCCAATGTTGTTCCTTCACACAAATTAAGAACATAATT CUST_3877_PI426429976
CUST_20507_PI426107926 FALSE Pj3contig_24366 TTGCTAAACTCTACTCGACCCTCCATATTAGATTCCTATTCGCTGCCCCAGATGATGTTT CUST_20507_PI426107926
CUST_5792_PI426429976 FALSE Pj3contig_30177 ATGGAGATTCGTGATTTTTCGACACTAGTTCGGATTAGAACCGATCACTGGCCGTGCTTA CUST_5792_PI426429976

Total number of rows: 58569

Table truncated, full table size 7344 Kbytes.




Download family Format
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Supplementary file Size Download File type/resource
GPL19751_034168_D_Fasta_20110513.txt.gz 1.4 Mb (ftp)(http) TXT
GPL19751_034168_D_GEO_20110513.txt.gz 2.3 Mb (ftp)(http) TXT

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