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Platform GPL19901 Query DataSets for GPL19901
Status Public on Oct 01, 2015
Title NimbleGen Candida glabrata CBS138 Expression Array [2009-01-08_RDKK145_Cgla_60mer_expr]
Technology type spotted oligonucleotide
Distribution custom-commercial
Organism Nakaseomyces glabratus
Manufacturer NimbleGen
Manufacture protocol High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/.
 
Description Design ID: 8878; Species: Candida glabrata CBS 138; Data Source:; Database site NCBI; Database name Refseq; Version/Revision; URL; Released date 15-MAY-2008; Type of array: Eukaryotic Expression(4plex); Number of target: 5,217; Length of probes: 60 mer; Number of probes per target: 6 pair; Density: 1 in 2; Replicate: 1; Total number of probes: 62,604; Cutoff value: 1,000; Rocheｿs design ID: RDKK145; Design file name: 2009-01-08_RDKK145_Cgla_60mer_expr_X4; Notice: We set 9,300 random probes to fill empty spots.
 
Submission date Mar 17, 2015
Last update date Oct 01, 2015
Contact name Hiroshi Nishikawa
E-mail(s) hiroshi_nishikawa@toyama-chemical.co.jp
Organization name Nagasaki University Graduate School of Biomedical Sciences
Street address 1-7-1 Sakamoto
City Nagasaki
ZIP/Postal code 852-8501
Country Japan
 
Samples (8) GSM1635482, GSM1635483, GSM1635484, GSM1635485, GSM1635486, GSM1635487 
Series (1)
GSE66984 Expression analysis of Candida glabrata CBS138 delta-vph2 mutant

Data table header descriptions
ID SEQ_ID from .ngd file
GENE_ID Entrez GeneID number for the ORF to which the indicated probe is directed.
ACCESSION Swissprot accession number of the Candida glabrata chromosome.
SECONDARY_NAME Accession number of the Candida glabrata chromosome on databases other than Entrez GeneID and Swissprot.
ORF Locus tag
SPOT_ID

Data table
ID GENE_ID ACCESSION SECONDARY_NAME ORF SPOT_ID
CAGL0A00110g 2886302 GeneID:2886302 CAGL0A00110g
CAGL0A00121g 2886308 GeneID:2886308 CAGL0A00121g
CAGL0A00143g 2886425 Q6FXW1 UniProtKB/TrEMBL:Q6FXW1;GI:50284701;GeneID:2886425 CAGL0A00143g
CAGL0A00165g 2886422 Q6FXW0 UniProtKB/TrEMBL:Q6FXW0;GI:50284703;GeneID:2886422 CAGL0A00165g
CAGL0A00187g 2886420 Q6FXV9 GOA:Q6FXV9;InterPro:IPR000306;UniProtKB/TrEMBL:Q6FXV9;GI:50284705;GeneID:2886420 CAGL0A00187g
CAGL0A00209g 2886291 Q6FXV8 GOA:Q6FXV8;InterPro:IPR003674;UniProtKB/TrEMBL:Q6FXV8;GI:50284707;GeneID:2886291 CAGL0A00209g
CAGL0A00231g 2886428 Q6FXV7 UniProtKB/TrEMBL:Q6FXV7;GI:50284709;GeneID:2886428 CAGL0A00231g
CAGL0A00253g 2886439 Q6FXV6 InterPro:IPR007514;UniProtKB/TrEMBL:Q6FXV6;GI:50284711;GeneID:2886439 CAGL0A00253g
CAGL0A00275g 2886490 Q6FXV5 GOA:Q6FXV5;InterPro:IPR000704;UniProtKB/TrEMBL:Q6FXV5;GI:50284713;GeneID:2886490 CAGL0A00275g
CAGL0A00297g 2886456 Q6FXV4 GOA:Q6FXV4;InterPro:IPR001623;InterPro:IPR004640;UniProtKB/TrEMBL:Q6FXV4;GI:50284715;GeneID:2886456 CAGL0A00297g
CAGL0A00319g 2886383 Q6FXV3 GOA:Q6FXV3;InterPro:IPR007471;InterPro:IPR007472;UniProtKB/TrEMBL:Q6FXV3;GI:50284717;GeneID:2886383 CAGL0A00319g
CAGL0A00341g 2886489 Q6FXV2 InterPro:IPR009305;UniProtKB/TrEMBL:Q6FXV2;GI:50284719;GeneID:2886489 CAGL0A00341g
CAGL0A00363g 2886491 Q6FXV1 GOA:Q6FXV1;InterPro:IPR000573;InterPro:IPR001030;InterPro:IPR004430;InterPro:IPR004431;UniProtKB/TrEMBL:Q6FXV1;GI:50284721;GeneID:2886491 CAGL0A00363g
CAGL0A00385g 2886283 Q6KEZ7 UniProtKB/TrEMBL:Q6KEZ7;GI:50284723;GeneID:2886283 CAGL0A00385g
CAGL0A00407g 2886460 Q6FXU9 GOA:Q6FXU9;InterPro:IPR000426;InterPro:IPR001353;UniProtKB/TrEMBL:Q6FXU9;GI:50284725;GeneID:2886460 CAGL0A00407g
CAGL0A00429g 2886295 Q6FXU8 GOA:Q6FXU8;InterPro:IPR001171;UniProtKB/TrEMBL:Q6FXU8;GI:50284727;GeneID:2886295 CAGL0A00429g
CAGL0A00451g 2886430 Q6FXU7 GOA:Q6FXU7;InterPro:IPR001138;InterPro:IPR007219;UniProtKB/TrEMBL:Q6FXU7;GI:50284729;GeneID:2886430 CAGL0A00451g
CAGL0A00473g 2886492 Q6FXU6 GOA:Q6FXU6;InterPro:IPR001313;UniProtKB/TrEMBL:Q6FXU6;GI:50284731;GeneID:2886492 CAGL0A00473g
CAGL0A00495g 2886465 Q6FXU5 GOA:Q6FXU5;InterPro:IPR000695;InterPro:IPR001757;InterPro:IPR004014;InterPro:IPR005834;InterPro:IPR006534;InterPro:IPR008250;UniProtKB/TrEMBL:Q6FXU5;GI:50284733;GeneID:2886465 CAGL0A00495g
CAGL0A00517g 2886322 Q6FXU4 GOA:Q6FXU4;InterPro:IPR001757;InterPro:IPR004014;InterPro:IPR005834;InterPro:IPR006068;InterPro:IPR006408;InterPro:IPR008250;UniProtKB/TrEMBL:Q6FXU4;GI:50284735;GeneID:2886322 CAGL0A00517g

Total number of rows: 5217

Table truncated, full table size 398 Kbytes.




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Supplementary file Size Download File type/resource
GPL19901_2009-01-08_RDKK145_Cgla_60mer_expr.ndf.gz 4.1 Mb (ftp)(http) NDF
GPL19901_2009-01-08_RDKK145_Cgla_60mer_expr.ngd.gz 223.4 Kb (ftp)(http) NGD

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