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Platform GPL20727

Query DataSets for GPL20727

Status

Public on Jul 23, 2015

Title

NimbleGen marine metagenome array [XM_Nov2012_RMB]

Technology type

in situ oligonucleotide

Distribution

non-commercial

Organism

marine metagenome

Manufacturer

NimbleGen

Manufacture protocol

ITO coated glass slides

Description

25 bp probes targeting the 16S rRNA of uncultivated microbes of mixed microbial communities

Submission date

Jul 22, 2015

Last update date

Jul 23, 2015

Contact name

Xavier Mayali

E-mail(s)

mayali1@llnl.gov

Phone

925-423-3892

Organization name

Lawrence Livermore National Laboratory

Department

Chemical Science

Street address

7000 East Ave

City

Livermore

State/province

CA

ZIP/Postal code

94550

Country

USA

Samples (17)

More...

GSM1830997, GSM1830998, GSM1830999, GSM1831000, GSM1831001, GSM1831002

Series (1)

Chip-SIP analysis of Monterey Bay surface waters incubated with organic carbon substrates

Data table header descriptions
ID
subarray	subarray
sequence	probe sequence
taxon	taxon

Data table
ID	subarray	sequence	taxon
acido_1_8_Marbact	Marbact	AATTCCGCATCCCTCTCCCGGCTTC	acido1
acido_1_11_Marbact	Marbact	GAATTCCGCATCCCTCTCCCGGCTT	acido1
acido1_1_Marbact	Marbact	AAACCTAGATCCGTCATCCCACACG	acido1
acido1_27_Marbact	Marbact	AACCTAGATCCGTCATCCCACACGC	acido1
acido1_9_Marbact	Marbact	ACAAACCTAGATCCGTCATCCCACA	acido1
acido_1_12_Marbact	Marbact	GGAATTCCGCATCCCTCTCCCGGCT	acido1
acido1_8_Marbact	Marbact	TTACAAACCTAGATCCGTCATCCCA	acido1
acido1_7_Marbact	Marbact	TACAAACCTAGATCCGTCATCCCAC	acido1
acido1_11_Marbact	Marbact	GAATTCCGCATCCCTCTCCCGGCTT	acido1
acido1_2_Marbact	Marbact	CAAACCTAGATCCGTCATCCCACAC	acido1
acido_2_18_Marbact	Marbact	CCCCATTGACAAAAATTCCCCACTG	acido2
acido_2_27_Marbact	Marbact	CCCCCATTGACAAAAATTCCCCACT	acido2
acido_2_30_Marbact	Marbact	CCCATTGACAAAAATTCCCCACTGC	acido2
acido_2_17_Marbact	Marbact	CAGTCCCCTCAGAGTGCTCAGCATT	acido2
acido_2_23_Marbact	Marbact	CGATACCCGCCACACCAAGTGCTCA	acido2
acido_2_26_Marbact	Marbact	TCGATACCCGCCACACCAAGTGCTC	acido2
acido_2_24_Marbact	Marbact	GTCGATACCCGCCACACCAAGTGCT	acido2
acido_2_9_Marbact	Marbact	AGGCCCCGAAGGGTCCCCAGCTTTG	acido2
acido_2_8_Marbact	Marbact	GGCCCCGAAGGGTCCCCAGCTTTGA	acido2
acido_2_25_Marbact	Marbact	GGTCGATACCCGCCACACCAAGTGC	acido2

Total number of rows: 4318

Table truncated, full table size 268 Kbytes.

Download family	Format
SOFT formatted family file(s)	SOFT
MINiML formatted family file(s)	MINiML

Supplementary file	Size	Download	File type/resource
GPL20727_XM_Nov2012_RMB.ndf.gz	6.7 Mb	(ftp)(http)	NDF

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