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Platform GPL20913 Query DataSets for GPL20913
Status Public on Dec 31, 2017
Title Agilent-071199 Agbis_v1 040802
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Agaricus bisporus
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Arrays of this design have barcodes that begin with 16071199 or 2571199.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

 
Submission date Sep 14, 2015
Last update date Dec 31, 2017
Contact name Alfons R Weig
E-mail(s) a.weig@uni-bayreuth.de
Organization name University of Bayreuth
Department Genomics and Bioinformatics
Street address Universitaetsstrasse 30
City Bayreuth
ZIP/Postal code 95447
Country Germany
 
Samples (8) GSM1880725, GSM1880726, GSM1880727, GSM1880728, GSM1880729, GSM1880730 
Series (1)
GSE73010 Vitamin B2 and drought stress responses in Agaricus bisporus

Data table header descriptions
ID
COL
ROW
NAME
PROBE NAME
CONTROL_TYPE
ACCESSION_STRING
CHROMOSOMAL_LOCATION
SEQUENCE
SPOT_ID

Data table
ID COL ROW NAME PROBE NAME CONTROL_TYPE ACCESSION_STRING CHROMOSOMAL_LOCATION SEQUENCE SPOT_ID
1 96 164 GE_BrightCorner GE_BrightCorner pos CONTROL
2 96 162 DarkCorner DarkCorner pos CONTROL
3 96 160 DarkCorner DarkCorner pos CONTROL
4 96 158 CUST_2074_PI430005902 CUST_2074_PI430005902 FALSE 118840 unmapped TTGTTGAATACGAGAAAGGCGATGGAGGGAGCAAAGAAAGTGTTGTCGTCAAGGTCATAG
5 96 156 CUST_2478_PI430005902 CUST_2478_PI430005902 FALSE 120792 unmapped AAAGGTTGGAGCAAATTGTCATTGCCCTCATTGCGATAGAAATTGGTTCGTGTGGAGTGG
6 96 154 CUST_7924_PI430005902 CUST_7924_PI430005902 FALSE 194821 unmapped GCTTTTTGATTCGTTGAATTCTATATGTGGAGATAGAGGTTTAAGAGAACAGGATTTGTG
7 96 152 CUST_924_PI430005902 CUST_924_PI430005902 FALSE 73476 unmapped ATTAAAGTGGAATCAACCTTCGATCGATTTCTATGAGAAGAAACTTGGTGCGACGGCGAT
8 96 150 CUST_3215_PI430005902 CUST_3215_PI430005902 FALSE 133623 unmapped TCCCAGAGGAGAACATGTAGCTTCGATCATCATCGAACAAGCTCAACTAGCAGATAAGGA
9 96 148 CUST_3425_PI430005902 CUST_3425_PI430005902 FALSE 136441 unmapped TGGAGCATTGAGAAACACAAGTTATGTTATACGTGCTGCAAACCGCTGGGCTATTCATAG
10 96 146 CUST_5030_PI430005902 CUST_5030_PI430005902 FALSE 181282 unmapped CATATGCACCACCGGAATCATGAAGCGTCAACGTCACCTTTACCATCTGTAATGGTAAAT
11 96 144 CUST_5795_PI430005902 CUST_5795_PI430005902 FALSE 188140 unmapped GAAAGACTTTATATTGCCCAAAGAAGTCGAAGCATTTCTCACCACTCCCTGCTCCTCTAG
12 96 142 CUST_5115_PI430005902 CUST_5115_PI430005902 FALSE 181833 unmapped GAAAATGGACGATAATTATCCCACAATGGGAGTAAGTTCAGAAATTCAGATACCCGGATA
13 96 140 CUST_9193_PI430005902 CUST_9193_PI430005902 FALSE 206909 unmapped CAAGGTTCCCCGGCTTCGTATAATTTCAATGCGTTTGTAGCTAGTGCCATAGCTAATTAG
14 96 138 CUST_5145_PI430005902 CUST_5145_PI430005902 FALSE 182121 unmapped CAAGGTCAATCGAAGCGCGTATCAGAAAGTTATTCCTATGATTTCAGCCAATTCGGTCCT
15 96 136 CUST_3499_PI430005902 CUST_3499_PI430005902 FALSE 137408 unmapped TACGAGAAAGCATTGCTAAGCAGAAAGCAAAACGGTACATTTGAAGACCACGCAGGGTCA
16 96 134 CUST_801_PI430005902 CUST_801_PI430005902 FALSE 70931 unmapped TTGTGAGAGACCCGAAAAGAGCTCCATATAACATCATCTGTTCCATAGCGGAACAAGGAT
17 96 132 CUST_9474_PI430005902 CUST_9474_PI430005902 FALSE 210461 unmapped AAATTGAAGAATTCGAGTAATGCGGTTGTGGGATTGAGTGATGTTGGTGGTACTGGTATT
18 96 130 CUST_8216_PI430005902 CUST_8216_PI430005902 FALSE 195608 unmapped AAGAATTCAGAGATGTCGTATTAGCGTGGCTCAGGGAGTTGCAACCTAGTGCTGAAGAAA
19 96 128 CUST_1594_PI430005902 CUST_1594_PI430005902 FALSE 115832 unmapped AGCCGCGAAGAATGCCCTAGATCATATTAAAGCGAACAACTCAGGAGTCGTGGATGATTA
20 96 126 CUST_9299_PI430005902 CUST_9299_PI430005902 FALSE 208371 unmapped CGGAAATGGAACCAATTCGCAAAAAGTCGAAGAGCAAGACGTTGTCGAAGAGAAAAGAGT

Total number of rows: 15744

Table truncated, full table size 2094 Kbytes.




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Supplementary data files not provided

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