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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Jul 11, 2016 |
| Title |
Illumina NextSeq 500 (Trypanosoma brucei brucei) |
| Technology type |
high-throughput sequencing |
| Distribution |
virtual |
| Organism |
Trypanosoma brucei brucei |
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| Submission date |
Jul 11, 2016 |
| Last update date |
Aug 20, 2018 |
| Contact name |
GEO |
| Country |
USA |
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| Samples (675)
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GSM2586512, GSM2586513, GSM2586514, GSM2586515, GSM2586516, GSM2586517
GSM2586518, GSM2586519, GSM2586520, GSM2586521, GSM2586522, GSM2586523, GSM2586524, GSM2586525, GSM2695705, GSM2695706, GSM2695707, GSM2695708, GSM2695709, GSM2695710, GSM2695711, GSM2695712, GSM2695713, GSM2695714, GSM2695715, GSM2695716, GSM3346686, GSM3346687, GSM3346688, GSM3346689, GSM3346690, GSM3346691, GSM3346692, GSM3346693, GSM3346694, GSM3346695, GSM3346696, GSM3346697, GSM3346698, GSM3346699, GSM3346700, GSM3346701, GSM3351136, GSM3351137, GSM3351138, GSM3351139, GSM3351140, GSM3351141, GSM3351142, GSM3351143, GSM3351144, GSM3351145, GSM3351250, GSM3351251, GSM3351252, GSM3351253, GSM3351411, GSM3351412, GSM3351413, GSM3351414, GSM3357440, GSM3357441, GSM3357442, GSM3357443, GSM3357444, GSM3357445, GSM3402343, GSM3402344, GSM3402345, GSM3402346, GSM3402347, GSM3402349, GSM3402350, GSM3402351, GSM3402352, GSM3402353, GSM3402354, GSM3402355, GSM3402356, GSM3402357, GSM3402358, GSM3402359, GSM3402360, GSM3402361, GSM3402362, GSM3402363, GSM3402364, GSM3402365, GSM3402366, GSM3402367, GSM3402368, GSM3402369, GSM3402370, GSM3402371, GSM3402372, GSM3402373, GSM3402374, GSM3402375, GSM3402376, GSM3402377, GSM3402378, GSM3402379, GSM3402380, GSM3402381, GSM3402382, GSM3402383, GSM3402384, GSM3402385, GSM3402386, GSM3402387, GSM3402388, GSM3402389, GSM3402390, GSM3402391, GSM3402392, GSM3402393, GSM3402394, GSM3402395, GSM3402397, GSM3402398, GSM3402399, GSM3402400, GSM3402401, GSM3402402, GSM3402403, GSM3402404, GSM3402405, GSM3402406, GSM3402407, GSM3402408, GSM3402409, GSM3402410, GSM3402411, GSM3402412, GSM3402413, GSM3402414, GSM3402415, GSM3402416, GSM3402417, GSM3402418, GSM3402419, GSM3402420, GSM3402421, GSM3402422, GSM3402423, GSM3402424, GSM3402425, GSM3402426, GSM3402427, GSM3402428, GSM3402429, GSM3402430, GSM3402431, GSM3402432, GSM3402433, GSM3402434, GSM3402435, GSM3402436, GSM3402437, GSM3402438, GSM3424103, GSM3424104, GSM3424105, GSM3424106, GSM3424107, GSM3424108, GSM3424109, GSM3424110, GSM3424111, GSM3424112, GSM3424113, GSM3424114, GSM3424115, GSM3424116, GSM3424117, GSM3424118, GSM3424119, GSM3424120, GSM3424121, GSM3424122, GSM3424123, GSM3424124, GSM3424125, GSM3424126, GSM3424127, GSM3424128, GSM3424129, GSM3424130, GSM3424131, GSM3424132, GSM3424133, GSM3424134, GSM3424135, GSM3424136, GSM3424137, GSM3424138, GSM3424139, GSM3424140, GSM3424141, GSM3424142, GSM3424143, GSM3424144, GSM3424145, GSM3424146, GSM3424147, GSM3424148, GSM3424149, GSM3424150, GSM3424151, GSM3424152, GSM3424153, GSM3424154, GSM3424155, GSM3424156, GSM3424157, GSM3424158, GSM3424159, GSM3424160, GSM3424161, GSM3424162, GSM3424163, GSM3424164, GSM3424165, GSM3424166, GSM3424167, GSM3424168, GSM3424169, GSM3424170, GSM3424171, GSM3424172, GSM3424173, GSM3424174, GSM3424175, GSM3424176, GSM3424177, GSM3424178, GSM3424179, GSM3424180, GSM3424181, GSM3424182, GSM3424183, GSM3424184, GSM3424185, GSM3424186, GSM3424187, GSM3424188, GSM3424189, GSM3424190, GSM3424191, GSM3424192, GSM3424193, GSM3424194, GSM3424195, GSM3424196, GSM3424197, GSM3424198, GSM3424199, GSM3424200, GSM3424201, GSM3424202, GSM3424203, GSM3424204, GSM3424205, GSM3424206, GSM3424207, GSM3424208, GSM3424209, GSM3424210, GSM3424211, GSM3424212, GSM3424213, GSM3424214, GSM3424215, GSM3424216, GSM3424217, GSM3424218, GSM3424219, GSM3424220, GSM3424221, GSM3424222, GSM3424223, GSM3424224, GSM3424225, GSM3424226, GSM3424227, GSM3424228, GSM3424229, GSM3424230, GSM3424231, GSM3424232, GSM3424233, GSM3424234, GSM3424235, GSM3424236, GSM3424237, GSM3424238, GSM3424239, GSM3424240, GSM3424241, GSM3424242, GSM3424243, GSM3424244, GSM3424245, GSM3424246, GSM3424247, GSM3424248, GSM3424249, GSM3424250, GSM3424251, GSM3424252, GSM3424253, GSM3424254, GSM3424255, GSM3424256, GSM3424257, GSM3424258, GSM3424259, GSM3424260, GSM3424261, GSM3424262, GSM3424263, GSM3424264, GSM3424265, GSM3424266, GSM3424267, GSM3424268, GSM3424269, GSM3424270, GSM3424271, GSM3424272, GSM3424273, GSM3424274, GSM3424275, GSM3424276, GSM3424277, GSM3424278, GSM3424279, GSM3424280, GSM3424281, GSM3424282, GSM3424283, GSM3424284, GSM3424285, GSM3424286, GSM3424287, GSM3424288, GSM3424289, GSM3424290, GSM3424291, GSM3424292, GSM3424293, GSM3424294, GSM3424295, GSM3424296, GSM3424297, GSM3424298, GSM3424299, GSM3424300, GSM3424301, GSM3424302, GSM3424303, GSM3424304, GSM3424305, GSM3424306, GSM3424307, GSM3424308, GSM3424309, GSM3424310, GSM3424311, GSM3424312, GSM3424313, GSM3424314, GSM3424315, GSM3424316, GSM3424317, GSM3424318, GSM3424319, GSM3424320, GSM3424321, GSM3424322, GSM3424323, GSM3424324, GSM3424325, GSM3424326, GSM3424327, GSM3424328, GSM3424329, GSM3424330, GSM3424331, GSM3424332, GSM3424333, GSM3424334, GSM3424335, GSM3424336, GSM3424337, GSM3424338, GSM3424339, GSM3424340, GSM3424341, GSM3424342, GSM3424343, GSM3424344, GSM3424345, GSM3424346, GSM3424347, GSM3424348, GSM3424349, GSM3424350, GSM3424351, GSM3424352, GSM3424353, GSM3424354, GSM3424355, GSM3424356, GSM3424357, GSM3424358, GSM3424359, GSM3424360, GSM3424361, GSM3424362, GSM3424363, GSM3424364, GSM3424365, GSM3424366, GSM3424367, GSM3424368, GSM3424369, GSM3424370, GSM3424371, GSM3424372, GSM3424373, GSM3424374, GSM3424375, GSM3424376, GSM3424377, GSM3424378, GSM3424379, GSM3424380, GSM3424381, GSM3424382, GSM3424383, GSM3424384, GSM3424385, GSM3424386, GSM3424387, GSM3424388, GSM3424389, GSM3424390, GSM3424391, GSM3424392, GSM3424393, GSM3424394, GSM3424395, GSM3424396, GSM3424397, GSM3424398, GSM3424399, GSM3424400, GSM3424401, GSM3424402, GSM3424403, GSM3424404, GSM3424405, GSM3424406, GSM3424407, GSM3424408, GSM3424409, GSM3424410, GSM3424411, GSM3424412, GSM3424413, GSM3424414, GSM3424415, GSM3424416, GSM3424417, GSM3424418, GSM3424419, GSM3424420, GSM3424421, GSM3424422, GSM3424423, GSM3424424, GSM3424425, GSM3424426, GSM3424427, GSM3424428, GSM3424429, GSM3424430, GSM3424431, GSM3424432, GSM3424433, GSM3424434, GSM3424435, GSM3424436, GSM3424437, GSM3424438, GSM3424439, GSM3424440, GSM3424441, GSM3424442...
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| Series (27)
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| GSE98061 |
GT-rich promoters can drive RNA pol II transcription and deposition of H2A.Z in African trypanosomes |
| GSE100895 |
RNAseq of wildtype and deletion mutants (H3.V KO, H4.V KO, H3.V/H4.V KO) |
| GSE100896 |
H3.V and H4.V |
| GSE118763 |
3D interaction maps in wild-type and histone variant deletion mutants generated by chromosome conformation capture [Hi-C I] |
| GSE118764 |
3D interaction maps in wild-type and histone variant deletion mutants generated by chromosome conformation capture [Hi-C II] |
| GSE118902 |
ATACseq in T. brucei wild-type and histone variant deletion cell lines. |
| GSE118917 |
Maps of histone variant H3.V deposition in Trypanosoma brucei brucei |
| GSE118938 |
Maps of histone variant H4.V deposition in Trypanosoma brucei brucei |
| GSE119071 |
Mapping the differential distribution of the cohesin subunit Scc1 in Trypanosoma brucei brucei. |
| GSE120515 |
Single-cell RNA sequencing in Trypanosoma brucei |
| GSE121026 |
Single-cell RNA sequencing in Trypanosoma brucei II |
| GSE130798 |
Identification of sequence-specific promoters driving polycistronic transcription initiation by RNA Polymerase II in trypanosomes |
| GSE145466 |
Identification of the mRNAs associated with the protein complex PuREBP1/PuREBP2 (Tb927.4.4550/Tb927.3.3060) in Trypanosoma brucei [RIP-seq] |
| GSE145468 |
Effect of the depletion of PuREBP1 (Tb927.4.4550) on the transcriptome of Trypanosoma brucei [RNAi] |
| GSE145515 |
Identification of transcripts bound to and regulated by the PuREBP1/2 complex in Trypanosoma brucei |
| GSE145622 |
RNA-seq datasets of Trypanosoma brucei WT cells and 2T1 cells, which were depleted of HAT1 or HAT2 for 48 h |
| GSE145625 |
TY1-H2A-ChIP-seq datasets of Trypanosoma brucei |
| GSE145707 |
TY1-RPB9 ChIP seq datasets of Trypanosoma brucei in 2T1 cells, which were depleted of HAT1 or HAT2 over a time period up to 48 h |
| GSE145810 |
H2A.Z ChIP seq datasets of Trypanosoma brucei in WT cells and 2T1 cells, which were depleted of HAT1 or HAT2 over a time period up to 72 h |
| GSE145812 |
Distinct roles for H4 and H2A.Z acetylation in RNA transcription in African trypanosomes |
| GSE168394 |
Transcriptional differentiation of Trypanosoma brucei during in vitro acquisition of resistance to acoziborole |
| GSE186562 |
Effect of the depletion of RBP33 (Tb927.8.990) on chromatin accesibility in bloodstream Trypanosoma brucei [ATAC-seq] |
| GSE186563 |
Effect of the depletion of RBP33 (Tb927.8.990) on the transcriptome of bloodstream and procyclic Trypanosome brucei [RNA-seq] |
| GSE186570 |
The RNA-binding protein RBP33 dampens non-productive transcription in trypanosomes |
| GSE212920 |
Identification of mRNAs associated with the protein complex ZC3H41/Z41AP (Tb927.11.1980/Tb927.7.7460) in Trypanosoma brucei |
| GSE212921 |
Effect of the depletion of ZC3H41 (Tb927.11.1980) on the transcriptome of procyclic Trypanosome brucei |
| GSE213007 |
Role of the RNA-binding protein ZC3H41 in the regulation of ribosomal protein messenger RNAs in trypanosomes. |
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| Supplementary data files not provided |
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