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Platform GPL22795 Query DataSets for GPL22795
Status Public on Jun 01, 2017
Title [Agilent-064832] C. elegans gene expression 8x44K olig array
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Caenorhabditis elegans
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description An Agilent C. elegans-specific microarray was custom-designed using Agilent catalog probes. It contained 42862 probes targeting 28164 unique genes, among which 76.6% or 21562 genes had a single probe, 23.4% or 6596 genes had 2 to 12 probes, and the remaining 6 genes had 13, 15, 20, 26, 27 and 37 probes, respectively. These probes were assembled from three existing Agilent catalog probe groups: PGRID51529TDT (512 probes), PGRID51764TDT (50), and PGRID51763TDT (42300). These 60-mer oligo probes, together with 1319 control probes, were printed in situ on a 364-row by 164-column array grid in an 8-array-per-slide format, yielding a 70% occupancy of 62976 available spots.
 
Submission date Dec 13, 2016
Last update date Jun 01, 2017
Contact name Ping Gong
E-mail(s) ping.gong@usace.army.mil
Phone (601) 634-3521
Organization name U.S Army Engineer Research and Development Center
Department Environmental Laboratory
Street address 3909 Halls Ferry Road
City Vicksburg
State/province Mississippi
ZIP/Postal code 39180
Country USA
 
Samples (48) GSM2428134, GSM2428135, GSM2428136, GSM2428137, GSM2428138, GSM2428139 
Series (1)
GSE92365 Comparative toxicogenomic effects of three IMX-101 constituents DNAN, NTO and NQ on C. elegans

Data table header descriptions
ID Agilent feature number
Row Row
Col Column
SubTypeMask Sub-type of controls
ControlType Control type (1 = control, -1 = solvent, 0 = non-control)
Probe Name Probe name
SystematicName Systematic name
GB_ACC GenBank Accession number
SEQUENCE Oligo probe sequence
TargetID Target gene ID
GeneName Target gene name
GeneSymbol Target gene symbol
Description Target gene description
Accessions Target gene accessions
ChromosomalLocation Chromosomal locus
SPOT_ID

Data table
ID Row Col SubTypeMask ControlType Probe Name SystematicName GB_ACC SEQUENCE TargetID GeneName GeneSymbol Description Accessions ChromosomalLocation SPOT_ID
6 1 6 0 0 A_12_P136108 F26G5.3 CTCAAAAGCATGGGAGTGCGCCTTTCGAATGATCTCAAGATTATCAACAGACAATTAGTT wb|F26G5.3 wb|none available [F26G5.3] ens|F26G5.3.1|gb|FM250471|tc|TC191764 ce|chrV:4955466-4955525 F26G5.3
7 1 7 0 0 A_12_P112583 K01A6.6 TGATAAATATTGTGAATCGATCGTTTTGGAAGGTGAGTGTTTGTTTCCGTTTCACAGTAT wb|K01A6.6 wb|K01A6.6 chrIV:11736777-11736836 K01A6.6
8 1 8 0 0 A_12_P110033 F14F8.3 GCTTGCAAATTTATAGTTTTTCCGAAATGGAGGAAAGTGGAGCCGATGGAATGTGCACTG wb|F14F8.3 entg|Serpentine Receptor, class Z entg|srz-1 wb|Caenorhabditis elegans Protein SRZ-1 (srz-1) mRNA, complete cds. [Source:RefSeq mRNA;Acc:NM_074820] [F14F8.3] ref|NM_074820|ens|F14F8.3.1|tc|TC188310 ce|chrV:16677437-16677496 F14F8.3
9 1 9 0 0 A_12_P149747 F56D12.1c.2 CGATTTGGCCAAAGATTCTCGAGAAAATCTCGGCGATTCACAAAGAGATCAAGCTTGGAG wb|F56D12.1c.2 entg|ALdehyde deHydrogenase entg|alh-6 wb|Caenorhabditis elegans Protein ALH-6, isoform b. [Source:RefSeq mRNA;Acc:NM_182151] [F56D12.1c.2] wb|F56D12.1c.3|wb|F56D12.1b|wb|F56D12.1a ce|chrII:1307624-1307565 F56D12.1c.2
10 1 10 0 0 A_12_P162451 A_12_P162451 CTATGTCGATACATCCTTGCAGAAGCTTCTTGGAACTGTAACCAAAGCGAATTCTTCGCA ce|chrIII:010258042-010258101 A_12_P162451
12 1 12 0 0 A_12_P106444 F42A6.8 TGATCAATATAACAAAAAACAAGCTTGAAATCCACAAGCACAAGGGAGCTAATCCACCAC wb|F42A6.8 wb|none available [F42A6.8] ens|F42A6.8.1|tc|TC188274 ce|chrIV:3339906-3339847 F42A6.8
14 1 14 0 0 A_12_P163974 C57321 C57321 TGCCACGTGAATTTCTTCTTCCGAATAAATCGCTTCGAGAGCCTCGATTTCTTGCTCTTG gb|C57321 gb|C57321 Yuji Kohara unpublished cDNA Caenorhabditis elegans cDNA clone yk302b12 3', mRNA sequence [C57321] ce|chrI:12665186-12665127
18 1 18 0 0 A_12_P150120 F26G5.12 TTTCGTTTGGAATGGGGATTTAAGCGGAGAGTAAGCACTACAAATCCGAATACATTTATG wb|F26G5.12 entg|Serpentine Receptor, class SX entg|srsx-10 wb|Caenorhabditis elegans Protein SRSX-10 (srsx-10) mRNA, complete cds. [Source:RefSeq mRNA;Acc:NM_001028692] [F26G5.12] ref|NM_001028692|ens|F26G5.12.1|tc|TC190364 ce|chrV:4973362-4973303 F26G5.12
20 1 20 0 0 A_12_P119918 K08A2.5b.2 TGGAGCTCTCCAAATATCTTCGTCACTACTCCAGAAAAAACTTTAGATTTCAGCAGGATA wb|C01B12.6 Tc3 [B0303.5] wb|C01B12.6|wb|B0303.5|wb|F56A6.3|wb|R10H1.3 chrII:16957-16898 K08A2.5b.2
21 1 21 0 0 A_12_P130487 NM_059707 NM_059707 AATAAGGAAATCTATTGCCACATGACATGTGCCACAGACACAACTAACATTCAATTTGTG ref|NM_059707 entg|Guanine nucleotide-binding protein G(o) subunit alpha entg|goa-1 ref|Caenorhabditis elegans Guanine nucleotide-binding protein G(o) subunit alpha (goa-1), partial mRNA [NM_059707] ens|C26C6.2.1|gb|AY008140|gb|M38251 ce|chrI:7525309-7525791
22 1 22 0 0 A_12_P132761 NM_060353 NM_060353 TGAAGAGATCTTTTAAAAGTGAAGTAGCACCGGAGCATGGGAATATTGAAAGAGCAAAAC ref|NM_060353 entg|hypothetical protein entg|F59C6.3 ref|Caenorhabditis elegans Uncharacterized protein (F59C6.3), partial mRNA [NM_060353] ens|F59C6.3.1|tc|TC194947|tc|TC199902 ce|chrI:10525299-10525410
24 1 24 0 0 A_12_P112291 B0513.3a GGATAAACTTTGTTACCTTTAATATCATCTGTTTTTGTTTACTTATTAAAAAATTGGTAG wb|B0513.3.2 60S ribosomal protein L29 [B0513.3.2] wb|B0513.3.2 chrIV:13882574-13882633 B0513.3a
25 1 25 0 0 A_12_P112268 ZK909.2j GTGTTGCTCTAGAACGTTCCTCTTCTCTAATATCTTATATGAACAAATTTCAGATCGAAG chrI:014959438-014959497 ZK909.2j
27 1 27 0 0 A_12_P101063 K08E7.1.1 CCGTCCCCATGTCCTGCCGCCGTGAGCTAAACAATGGTTGTTAATATTTCGACAATTTTA wb|K08E7.1.1 entg|Enhancer of AKt-1 null entg|eak-7 wb|Caenorhabditis elegans Protein EAK-7 (eak-7) mRNA, complete cds. [Source:RefSeq mRNA;Acc:NM_070004] [K08E7.1.1] ens|K08E7.1.2.1|ens|K08E7.1.1.1|tc|TC185501 ce|chrIV:12563888-12563829 K08E7.1.1
28 1 28 0 0 A_12_P140656 C43E11.6c AGTCAATGTTTTGTGTCTCCAACACCCCCGTCTCTGTTATACTGTTCGGTTGACTAATCC wb|C43E11.6c entg|NeurABin entg|nab-1 wb|Caenorhabditis elegans Protein NAB-1, isoform a. [Source:RefSeq mRNA;Acc:NM_058931] [C43E11.6c] ens|C43E11.6c.1|tc|TC202656 ce|chrI:4230967-4231026 C43E11.6c
31 1 31 0 0 A_12_P138247 C41H7.3 GAGCAACGACAGGTGGAGGAGCGTCACTAATTCTTATTTTAATGTATAACTATTTTTAAC wb|C41H7.3 wb|Caenorhabditis elegans Protein C41H7.3 (C41H7.3) mRNA, complete cds. [Source:RefSeq mRNA;Acc:NM_062022] [C41H7.3] ens|C41H7.3.1|tc|TC186330 ce|chrII:3007358-3007417 C41H7.3
33 1 33 0 0 A_12_P164237 BJ795361 BJ795361 TTGATGGGTGGGGGCTTAAAAGTGCGCTAACAAACTCTATTTGTAAGGGTAAAAATAGAA gb|BJ795361 gb|BJ795361 unpublished oligo-capped cDNA library Caenorhabditis elegans cDNA clone yk1710h07 3', mRNA sequence [BJ795361] ce|chrIV:12545487-12545428
34 1 34 0 0 A_12_P166479 T08G11.1a GAAGATATCAAAATTTGCCACGTTACACTCTCTGAAACTGCAAGCACATACCGTTCTCAG wb|T08G11.1a entg|hypothetical protein entg|T08G11.1 wb|Caenorhabditis elegans Protein T08G11.1, isoform b (T08G11.1) mRNA, complete cds. [Source:RefSeq mRNA;Acc:NM_170907] [T08G11.1a] wb|T08G11.1b|ref|NM_171842|ref|NM_170907 ce|chrI:8907251-8907192 T08G11.1a
35 1 35 0 0 A_12_P118426 Y73F8A.10 GCAGAAAGTCAATGGAACTATGTGGAATGGGATGGGTTATCGCTTCAGAATCACCGAGAT wb|Y73F8A.10 entg|hypothetical protein entg|Y73F8A.10 wb|Caenorhabditis elegans Protein Y73F8A.10 (Y73F8A.10) mRNA, complete cds. [Source:RefSeq mRNA;Acc:NM_070444] [Y73F8A.10] ref|NM_070444|ens|Y73F8A.10.1|tc|TC195192 ce|chrIV:15295174-15295233 Y73F8A.10
38 1 38 0 0 A_12_P170028 CV125925 CV125925 TTGCTCACATTCGAACGATTATTCATCAACGACACTGCGCACGTGAACACTCTGACATGA gb|CV125925 gb|OSTF30047B08 pDONR201 Entry vector Caenorhabditis elegans cDNA, mRNA sequence [CV125925] ce|chrV:9937919-9937860

Total number of rows: 42862

Table truncated, full table size 12870 Kbytes.




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