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Platform GPL22953 Query DataSets for GPL22953
Status Public on Jan 20, 2017
Title Aligent-047614
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Porphyromonas gingivalis
Manufacturer Agilent
Manufacture protocol Agilent
 
 
Submission date Jan 19, 2017
Last update date Jan 20, 2017
Contact name Hongyan Wang
E-mail(s) hywang@cmu.edu.cn
Organization name School of Stomatology, China Medical University
Department Department of Periodontology
Street address Nanjing North St. 117
City Shenyang
State/province Liaoning Province
ZIP/Postal code 110002
Country China
 
Samples (4) GSM2464365, GSM2464366, GSM2464367, GSM2464368
Series (1)
GSE93873 Molecular pathways underlying inhibitory effect of antimicrobial peptide Nal-P-113 on bacteria biofilms formation of Porphyromonas gingivalis W83 by DNA microarray

Data table header descriptions
ID
ControlType
PrimaryAccession
ORF
SEQUENCE
GenomicCoordinates
GeneName
ControlType
TargetID
CHROMOSOMAL_LOCATION
Description
SPOT_ID

Data table
ID ControlType PrimaryAccession ORF SEQUENCE GenomicCoordinates GeneName ControlType TargetID CHROMOSOMAL_LOCATION Description SPOT_ID
GE_BrightCorner 1 CONTROL
DarkCorner 1 CONTROL
PginP00037890 0 PG2213100300001895 PG2213 GGATGAAGTAGGCGAAGCTACAGACGCAGGGACTGTATGTGGTTCATGCCAAGACGAAAT chr1:2324938-2325120 PG2213100300001895 FALSE PG2213100300001895 chr1:2324938-2325120 similar to GB:M19480, GB:M19481, SP:P19883, and PID:182721
PginP00014007 0 PG0799100300000701 PG0799 TCAGCCCAAATCGGTCATTCATAAAAAAGAAAATCAGGCAGCCGGAGTGAATCTAACTGC chr1:854474-854659 PG0799100300000701 FALSE PG0799100300000701 chr1:854474-854659 hypothetical protein
PginP00000714 0 PG0042100300000036 PG0042 AGAACCCCGTGAAGTATGCTCATATCGTTACTTCTACGACTCACAAGACACTGCGTGGCC chr1:49769-51049 PG0042100300000036 FALSE PG0042100300000036 chr1:49769-51049 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate
PginP00016714 0 PG0965100300000836 PG0965 TGGCTCACGAGTAGATGTTTACTTGCCCCTCGGCTCTCAGGTAGAGGTTAAGATGGATCA chr1:1025201-1025866 PG0965100300000836 FALSE PG0965100300000836 chr1:1025201-1025866 catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine
PginP00016797 0 PG0971100300000840 PG0971 GCTGACTTTGAACTTGAGGACTTGAAGGTAGGACATAGCTACTTCATGGCTAAGGATATT chr1:1031086-1032801 PG0971100300000840 FALSE PG0971100300000840 chr1:1031086-1032801 McrBC restriction endonuclease system, McrB subunit, putative
PginP00012136 0 PG0691100300000607 PG0691 TCGATGTCATTCTTGAAAATAGTGTTAGCGATGATCTGTTAGAACAAGCCAAGAATATTT chr1:747275-747559 PG0691100300000607 FALSE PG0691100300000607 chr1:747275-747559 identified by match to PFAM protein family HMM PF01106
PginP00004939 0 PG0286100300000247 PG0286 TCTGCAGGAAATGGAAGATGAAGGGGAAATCTACGAATCGATAGAAGATATTTGGCCGGA chr1:320257-320514 PG0286100300000247 FALSE PG0286100300000247 chr1:320257-320514 hypothetical protein
PginP00008571 0 PG0493100300000429 PG0493 GGAGGTTCCGTGCGAGCTGTAAAACCGATAGATGAGATTGTCGCATGGCATTTTCCGGGA chr1:534832-534990 PG0493100300000429 FALSE PG0493100300000429 chr1:534832-534990 hypothetical protein
PginP00020138 0 PG1164100300001007 PG1164 GATTCTGATTCGCAACAAGGCTGCTCACAACCAATTTCCCTGCGCTGCAGAAATGCCTCT chr1:1244197-1247604 PG1164100300001007 FALSE PG1164100300001007 chr1:1244197-1247604 hypothetical protein
PginP00010978 0 PG0623100300000549 PG0623 GCTCAAGAGATGCATGCACATATTCGTAAGAGTATAGCCGCTAAATATGGAAAAGAGGTT chr1:677401-678156 PG0623100300000549 FALSE PG0623100300000549 chr1:677401-678156 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate
PginP00024256 0 PG1417100300001213 PG1417 GATGCCGAGCGGTTCGTTCGGGCCTACGACAGCGGGCCGTATGGATAGCTATGTGGATCT chr1:1501435-1503081 PG1417100300001213 FALSE PG1417100300001213 chr1:1501435-1503081 similar to SP:P34210, and PID:550102
PginP00015038 0 PG0862100300000752 PG0862 TCTCCTATGGGACATTATCTATTGAAAGACAGCCCTAAAACAGGGACAGGAGATTTGCTA chr1:922880-926278 PG0862100300000752 FALSE PG0862100300000752 chr1:922880-926278 Possibly an isoschizomer of Eco57IR.
PginP00002176 0 PG0125100300000109 PG0125 GCTCCCTGCCATCGTACAGCTTAGAGCCAAGAGTGCAGGGAGCAATACGGGAGAGATAGA chr1:146328-146876 PG0125100300000109 FALSE PG0125100300000109 chr1:146328-146876 hypothetical protein
PginP00016020 0 PG0924100300000801 PG0924 ATCCGCCACTGCCCGAAAGAGACAAAGCACTTAAACAACTGCACTCACAGAACAGCAGAT chr1:982943-983758 PG0924100300000801 FALSE PG0924100300000801 chr1:982943-983758 identified by match to TIGR protein family HMM TIGR01680
PginP00011876 0 PG0677100300000594 PG0677 ATGGCAAGGAGCGTACCTATTATATCTGGAACAACTGCAGCCACGAGGTCGCCTACAAAG chr1:727793-728986 PG0677100300000594 FALSE PG0677100300000594 chr1:727793-728986 similar to GB:M22488, GB:L35279, GB:L35278, SP:P13497, and PID:619424
PginP00000038 0 PG0002100300000002 PG0002 TGCAGGAACCGTGGTGATTAGGGATGTACCGCCCTATGCCTTGGTAGTGGGCAATCCTGC chr1:1435-2007 PG0002100300000002 FALSE PG0002100300000002 chr1:1435-2007 similar to GB:U03884, GB:U12541, GB:U12542, GB:U12544, GB:U12545, GB:S78737, GB:U12543, SP:P48048, PID:1698659, PID:1698660, PID:1698661, PID:1698662, PID:1698663, PID:1698664, PID:433143, PID:529313, PID:529315, PID:529317, PID:639911, and PID:639912
PginP00011496 0 PG0654100300000575 PG0654 GAATACGACACCACTATCCCTCTGTCGTCTGTATTGTTCCCCACGCATGAGGAGTTCTTC chr1:705603-706775 PG0654100300000575 FALSE PG0654100300000575 chr1:705603-706775 hypothetical protein
PginP00021936 0 PG1274100300001097 PG1274 GTTCGAGCAGATCACCATACCGGGTGCAAGCATCGACGGCGTCCAGTTCCTCAAAGACGG chr1:1351983-1352549 PG1274100300001097 FALSE PG1274100300001097 chr1:1351983-1352549 Involved in peptide bond synthesis

Total number of rows: 1914

Table truncated, full table size 440 Kbytes.




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