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Status |
Public on Jan 20, 2017 |
Title |
P.gingivalis W83 wild strain rep2 |
Sample type |
RNA |
|
|
Source name |
P.gingivalis W83 wild strain, replicate 2
|
Organism |
Porphyromonas gingivalis |
Characteristics |
strain: W83 treatment: none
|
Treatment protocol |
Porphyromonas gingivalis strain W83 was treated with 6.25ug/mL for 0.5h.
|
Growth protocol |
Porphyromonas gingivalis strain W83 was grown anaerobically (10% CO2, 10% H2, 80% N2 ) in enriched brain–heart infusion (BHI) broth containing 5% fiber-free sheep blood, 1% vitamin K and hemin, 37℃.
|
Extracted molecule |
total RNA |
Extraction protocol |
Total RNA was extracted using Trizol reagent and was further purified using NucleoSpin® RNA clean-up(MACHEREY-NAGEL,Germany) according to the manufactures’ instructions. The RNA quality was assessed by formaldehyde agarose gel electrophoresis and was quantitated spectrophotometrically.
|
Label |
Cy3
|
Label protocol |
Labeling was performed at the CapitalBio Corporation (http://www.capitalbio.com/en/index.asp, Beijing, China), a service provider authorized by Agilent (California, USA) according to the Agilent’s Expression user’s guide.
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Hybridization protocol |
Hybridization was performed at the CapitalBio Corporation (http://www.capitalbio.com/en/index.asp, Beijing, China), a service provider authorized by Agilent (California, USA), according to the Agilen’s Expression user’s guide.
|
Scan protocol |
Scanning was performed at the CapitalBio Corporation (http://www.capitalbio.com/en/index.asp, Beijing, China), a service provider authorized by Agilent (California, USA), according to the Agilen’s Expression user’s guide.
|
Description |
Gene expression of P. gingivalis W83 wild strain
|
Data processing |
Data analysis was performed at the CapitalBio Corporation (http://www.capitalbio.com/en/index.asp, Beijing, China), a service provider authorized by Agilent (California, USA) . The expression data of probes were normalized using quantile normalization and expression data of genes were generated using the Robust Multichip Average (RMA) algorithm.
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Submission date |
Jan 19, 2017 |
Last update date |
Jan 20, 2017 |
Contact name |
Hongyan Wang |
E-mail(s) |
hywang@cmu.edu.cn
|
Organization name |
School of Stomatology, China Medical University
|
Department |
Department of Periodontology
|
Street address |
Nanjing North St. 117
|
City |
Shenyang |
State/province |
Liaoning Province |
ZIP/Postal code |
110002 |
Country |
China |
|
|
Platform ID |
GPL22953 |
Series (1) |
GSE93873 |
Molecular pathways underlying inhibitory effect of antimicrobial peptide Nal-P-113 on bacteria biofilms formation of Porphyromonas gingivalis W83 by DNA microarray |
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