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Status
Public on Oct 18, 2017
Title
NimbleGen design name 120223_DvH_Mm_11-11_JV Desulfovibrio vulgaris str. Hildenborough
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Nitratidesulfovibrio vulgaris str. Hildenborough Manufacturer
NimbleGen
Manufacture protocol
High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/.
Description
NimbleGen design name 120223_DvH_Mm_11-11_JV. Each array contains 9616 gene-specific 65-mer probes with three probes per gene and six replicates per probe, negative control (1689 probes specific to thermophiles), and positive controls (1200 probes specific to 16S).
Submission date
Sep 13, 2017
Last update date
Oct 18, 2017
Contact name
Aifen Zhou
E-mail(s)
Aifen.Zhou-1@ou.edu Organization name
University of Oklahoma
Department
Microbiology & Plant Biology
Street address
101 David L. Boren Blvd
City
Norman
State/province
OK
ZIP/Postal code
73019
Country
USA
Samples (18)
GSM2782004 , GSM2782005 , GSM2782006 , GSM2782007 , GSM2782008 , GSM2782009
GSM2782010 ,
GSM2782011 ,
GSM2782012 ,
GSM2782013 ,
GSM2782014 ,
GSM2782015 ,
GSM2782016 ,
GSM2782017 ,
GSM2782018 ,
GSM2782019 ,
GSM2782020 ,
GSM2782021 Series (1)
GSE103797 Gene expression of Desulfovibrio vulgaris Hildenborough (DvH) strain ES10-5 evolved under salt stress for 5000 generations
Data table header descriptions ID VIMSS ID number of the gene
GI Genebank ID number of the gene
ORF Locus tag; Gene name in DvH genome
Annotation gene description
SPOT_ID
Data table ID GI ORF Annotation SPOT_ID VIMSS206065
46579060
DVU0646 precorrin-2 C20-methyltransferase (TIGR)
VIMSS206066
46579061
DVU0647 "iron compound ABC transporter, periplasmic iron compount-binding protein, putative (TIGR)"
VIMSS206067
46579062
DVU0648 "iron compound ABC transporter, ATP-binding protein (TIGR)"
VIMSS206069
46579063
DVU0649 "iron compound ABC transporter, permease protein (TIGR)"
VIMSS206070
46579064
DVU0650 "chelatase, putative (TIGR)"
VIMSS206071
46579065
DVU0651 "membrane protein, putative (TIGR)"
VIMSS206072
46579066
DVU0652 chemotaxis protein CheV (TIGR)
VIMSS206074
46579067
DVU0653 "sigma-54 dependent transcriptional regulator, putative/response regulator (TIGR)"
VIMSS206075
46579068
DVU0654 "peptidase, U32 family (TIGR)"
VIMSS206076
46579069
DVU0655 PHP domain protein (TIGR)
VIMSS206078
46579070
DVU0656 conserved hypothetical protein (TIGR)
VIMSS206079
46579071
DVU0657 "heat shock protein, Hsp20 family (TIGR)"
VIMSS206080
46579072
DVU0658 "heat shock protein, Hsp20 family (TIGR)"
VIMSS206081
46579073
DVU0659 hypothetical protein (TIGR)
VIMSS206083
46579074
DVU0660 "phosphoesterase, putative (TIGR)"
VIMSS206084
46579075
DVU0661 dihydrouridine synthase family protein (TIGR)
VIMSS206085
46579076
DVU0662 serine O-acetyltransferase (TIGR)
VIMSS206086
46579077
DVU0663 cysteine synthase A (TIGR)
VIMSS206087
46579078
DVU0664 cysteine desulfurase (TIGR)
VIMSS206088
46579079
DVU0665 nitrogen fixation protein nifU (TIGR)
3300 230 Kbytes .Supplementary file Size Download File type/resource GPL24011_120223_DvH_Mm_11-11_JV_exp.ndf.gz
5.7 Mb
(ftp) (http) NDF
GPL24011_120223_DvH_Mm_11-11_JV_void.ndf.gz
2.5 Mb
(ftp) (http) NDF
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