GEO help: Mouse over screen elements for information.
Status
Public on Oct 16, 2018
Title
Agi-perou-lab-custom-MM-144K-arrays-BARCODE25503 [UNC microarray database probe name version]
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Mus musculus Manufacturer
agilent
Manufacture protocol
agilent technology
Submission date
Nov 28, 2017
Last update date
Oct 16, 2018
Contact name
Charles M. Perou
E-mail(s)
cperou@med.unc.edu Organization name
University of North Carolina at Chapel Hill
Department
Professor of Genetics, and Pathology & Laboratory Medicine; Lineberger Comprehensive Cancer Center
Street address
12-044 Lineberger Comprehensive Cancer Center CB# 7295
City
Chapel Hill
State/province
NC
ZIP/Postal code
27599-7264
Country
USA
Samples (119)
GSM2866892 , GSM2866893 , GSM2866894 , GSM2866895 , GSM2866896 , GSM2866897
GSM2866898 ,
GSM2866899 ,
GSM2866900 ,
GSM2866901 ,
GSM3454336 ,
GSM3454337 ,
GSM3454338 ,
GSM3454339 ,
GSM3454340 ,
GSM3454341 ,
GSM3454342 ,
GSM3454343 ,
GSM3454344 ,
GSM3454345 ,
GSM3454346 ,
GSM3454347 ,
GSM3454348 ,
GSM3454349 ,
GSM3454350 ,
GSM3454351 ,
GSM3454352 ,
GSM3454353 ,
GSM3454354 ,
GSM3454355 ,
GSM3454356 ,
GSM3454357 ,
GSM3454358 ,
GSM3454359 ,
GSM3454360 ,
GSM3454361 ,
GSM3454362 ,
GSM3454363 ,
GSM3454364 ,
GSM3454365 ,
GSM3454366 ,
GSM3454367 ,
GSM3454368 ,
GSM3454369 ,
GSM3454370 ,
GSM3454371 ,
GSM3454372 ,
GSM3454373 ,
GSM3454374 ,
GSM3454375 ,
GSM3454376 ,
GSM3454377 ,
GSM3454378 ,
GSM3454379 ,
GSM3454380 ,
GSM3454381 ,
GSM3454382 ,
GSM3454383 ,
GSM3454384 ,
GSM3454385 ,
GSM3454386 ,
GSM3454387 ,
GSM3454388 ,
GSM3454389 ,
GSM3454390 ,
GSM3454391 ,
GSM3454392 ,
GSM3454393 ,
GSM3454394 ,
GSM3454395 ,
GSM3454396 ,
GSM3454397 ,
GSM3454398 ,
GSM3454399 ,
GSM3454400 ,
GSM3454401 ,
GSM3454402 ,
GSM3454403 ,
GSM3454404 ,
GSM3454405 ,
GSM3454406 ,
GSM3454407 ,
GSM3454408 ,
GSM3454409 ,
GSM3454410 ,
GSM3454411 ,
GSM3454412 ,
GSM3454413 ,
GSM3454414 ,
GSM3454415 ,
GSM3454416 ,
GSM3454417 ,
GSM3454418 ,
GSM3454419 ,
GSM3454420 ,
GSM3454421 ,
GSM3454422 ,
GSM3454423 ,
GSM3454424 ,
GSM3454425 ,
GSM3454426 ,
GSM3454427 ,
GSM3454428 ,
GSM3454429 ,
GSM3454430 ,
GSM3454431 ,
GSM3454432 ,
GSM3454433 ,
GSM3454434 ,
GSM3454435 ,
GSM3454436 ,
GSM3454437 ,
GSM3454438 ,
GSM3454439 ,
GSM3454440 ,
GSM3454441 ,
GSM3454442 ,
GSM3454443 ,
GSM3454444 Series (3)
GSE107432 Cdh1 and Pik3ca mutations cooperate to induce Immune-Related Invasive Lobular Carcinoma of the Breast
GSE122075 A mouse model featuring tissue specific deletion of p53 and Brca1 gives rise to mammary tumors with genomic and transcriptomic similarities to human basal-like breast cancer [expression]
GSE122076 A mouse model featuring tissue specific deletion of p53 and Brca1 gives rise to mammary tumors with genomic and transcriptomic similarities to human basal-like breast cancer
Data table header descriptions ID probe name at UNC microarray database
Agilent_probe_name Agilent probe name
Gene ID Gene ID
Refseq ID Refseq ID
GenBank Accession GenBank accession number
GB_ACC GenBank Accession number
Gene Symbol Gene Symbol
Gene Description Gene Description
Chromosome Number Chromosome Number
Chromosome Map Location Chromosome Map Location
SEQUENCE SPOT_ID
Data table ID Agilent_probe_name Gene ID Refseq ID GenBank Accession GB_ACC Gene Symbol Gene Description Chromosome Number Chromosome Map Location SEQUENCE SPOT_ID AGI_MM_OLIGO_A_51_P100021
A_51_P100021
16656
NM_010657.3 NM_010657.3 HIVEP3
human immunodeficiency virus type I enhancer binding protein 3
4
4 D1
CATGGCTGGATTAACGTATGTGTGTGGTATATAGATACACAGAGAGAAACCAAAGTGGTG
AGI_MM_OLIGO_A_51_P100034
A_51_P100034
69674
NM_027162.3 NM_027162.3 MIF4GD
MIF4G domain containing
11
11 E2
GAGACTTTTGTGGAGGAAGCCTGTTTCCTCCAGTCATGAGTGACTGCCTCACCAGGTTGG
AGI_MM_OLIGO_A_51_P100052
A_51_P100052
245450
NM_198863.1 NM_198863.1 SLITRK2
"SLIT and NTRK-like family, member 2"
X
X A5
CTAAATGTGAATTGCCAAGAAAGGAAGTTCACTAACATCTCTGACCTACAGCCCAAACCT
AGI_MM_OLIGO_A_51_P100063
A_51_P100063
16924
NM_010727.3 NM_010727.3 LNX1
ligand of numb-protein X 1
5
5 D
GAAGAATCAGATGTGGTGACATTCTTCTCGCTGTCAACGGTAGAAGTACATCGGGTATGA
AGI_MM_OLIGO_A_51_P100065
A_51_P100065
16924
NM_010727.3 NM_010727.3 LNX1
ligand of numb-protein X 1
5
5 D
TTTTTTATCAAGTCCATTGTTGAAGGAACACCTGCATACAATGACGGAAGAATCAGATGT
AGI_MM_OLIGO_A_51_P100084
A_51_P100084
432536
NR_002893.2 NR_002893.2 1700054H16RIK
RIKEN cDNA 1700054H16 gene
11
11 A2
AAGTCATCTCTCATGCCTATCAGAATACTCTGCCTCTAAGCCCAAATCAACATCTTAAAA
AGI_MM_OLIGO_A_51_P100099
A_51_P100099
69886
AK011292.1 AK011292.1 2610002J23RIK
RIKEN cDNA 2610002J23 gene
11
-
TTTTGTTGTTTTACTTACAGCATATGTTCTGGTGATTGAAAACCAAACAGTTATGGAGGG
AGI_MM_OLIGO_A_51_P100101
A_51_P100101
170779
NM_130904.2 NM_130904.2 CD209D
CD209d antigen
8
8 A1.1
ATTGTGCAGAGTTCTCTGGGGATGGCTGGAATGATCTCAGTTGTGATAAACTACTTTTCT
AGI_MM_OLIGO_A_51_P100123
A_51_P100123
14168
AF199608.1 AF199608.1 FGF13
fibroblast growth factor 13
X
X A6|X 18.0 cM
TGATGCAGACTCTTGGAAACCTCAGAAACGCATGGTGACGATATGACCAAGAATCTTCCT
AGI_MM_OLIGO_A_51_P100155
A_51_P100155
70285
NM_027371.3 NM_027371.3 BXDC5
brix domain containing 5
3
3 H3
TACGAAGGGGTCCACAAGCCACGGGAAATGGATACAAGTCGAAGGAAATTCCACTTATAA
AGI_MM_OLIGO_A_51_P100174
A_51_P100174
17427
NM_008613.2 NM_008613.2 MNS1
meiosis-specific nuclear structural protein 1
9
9 D
CTGTTTTACAGTTGGTGACAGTAGGCCCTGGTCTATCTGCATGTTCTAAAACATCCTCCT
AGI_MM_OLIGO_A_51_P100180
A_51_P100180
26896
NM_001048208.1 NM_001048208.1 MED14
mediator complex subunit 14
X
X A1.1
TGGTGTGATTCAAATGTCTTCTGATAACTTGATGTTATTTGGAGGAGTTCAGTAAGATTG
AGI_MM_OLIGO_A_51_P100181
A_51_P100181
26896
NM_001048208.1 NM_001048208.1 MED14
mediator complex subunit 14
X
X A1.1
CATCTCAATAGGATTTCTTTTTAAGAGTACTGTACTGTCTCTTGAAGCCAGTCAGGGACT
AGI_MM_OLIGO_A_51_P100208
A_51_P100208
330908
NM_177906.4 NM_177906.4 OPCML
opioid binding protein/cell adhesion molecule-like
9
9 A4
TTTGGGTTTTCTTTGGCATAAACCTTATTTCTAGAAATCCTCATGTCCAATTGCTTTCCC
AGI_MM_OLIGO_A_51_P100218
A_51_P100218
171232
NM_134198.1 NM_134198.1 V1RF1
"vomeronasal 1 receptor, F1"
17
17 A3.2
TTTAGTTAATCTTACCTGGCATCTAGTGAGTATCCATGCAATATTCTCAATGTGTTTTGC
AGI_MM_OLIGO_A_51_P100227
A_51_P100227
70572
NM_023579.4 NM_023579.4 IPO5
importin 5
14
14 E5
GATCCAAACGTTTTGGCTTAGGATTTCCATTGCAGATTGTAATTGCTTTAGAGACACACG
AGI_MM_OLIGO_A_51_P100238
A_51_P100238
258373
NM_146376.2 NM_146376.2 OLFR323
olfactory receptor 323
11
-
GGACCATGATCTCCATGTATGTGCGCCCAAATGCACATCTGTCACCGGAACTCAACAAGG
AGI_MM_OLIGO_A_51_P100246
A_51_P100246
22192
NM_145578.1 NM_145578.1 UBE2M
"ubiquitin-conjugating enzyme E2M (UBC12 homolog, yeast)"
7
7 A1|7 4.0 cM
AGTCCTTACGATAAACTCCATAATTTATGGCCTGCAGTATCTCTTCTTGGAGCCGAACCC
AGI_MM_OLIGO_A_51_P100262
A_51_P100262
"NG_001647.1,NG_003346.1,AC121953.2" NG_001647.1 "NG_001647.1 >gi|24046543|ref|NG_001647.1| Mus musculus olfactory receptor GA_x5J8B7W6RL5-12878266-12878409 (GA_x5J8B7W6RL5-12878266-12878409) pseudogene on chromosome 9gi|20531365|gb|AF500735.1| Mus musculus olfactory receptor GA_x5J8B7W6RL5-12878266-12878409 pseudogene, complete sequence"
CTTCATTTAGAGTCTGAGGATCAAAGGCATTAAAGATGCACCAAGAAGAATCCACAGCAG
AGI_MM_OLIGO_A_51_P100289
A_51_P100289
20807
NM_020493.2 NM_020493.2 SRF
serum response factor
17
17 C
GGTGTATCCCTAATTAAGTGCCTCTAGGGGTGTGTGCGCGCGCCTGTGTCCTGAGTGAAT
80536 14541 Kbytes .Supplementary data files not provided
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