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Status
Public on May 14, 2018
Title
Agilent custom HK design array v2[8mer]
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
synthetic construct Manufacturer
Agilent Technologies
Manufacture protocol
This protein binding microarray (PBM) involved binding GST-tagged proteins to custom-designed, double-stranded 44K Agilent microarrays in order to determine their sequence preferences. The method is described in Berger et al., Nature Biotechnology 2006.
Description
8mer sequence depicted below is not the sequence represented on the array, but the targeted sequence. Please see the two array design files attached below for array probe sequences.
Submission date
Dec 19, 2017
Last update date
Dec 19, 2017
Contact name
Desiree Tillo
E-mail(s)
desiree.tillo@nih.gov Phone
+1-240-760-7289
Organization name
NIH/NCI
Street address
41 Center Dr, Room D310
City
Bethesda
State/province
MD
ZIP/Postal code
20892
Country
USA
Samples (109)
GSM2894165 , GSM2894166 , GSM2894167 , GSM2894168 , GSM2894169 , GSM2894170
GSM2894171 ,
GSM2894172 ,
GSM2894173 ,
GSM2894174 ,
GSM2894175 ,
GSM2894176 ,
GSM2894177 ,
GSM2894178 ,
GSM2894179 ,
GSM2894180 ,
GSM2894181 ,
GSM2894182 ,
GSM2894183 ,
GSM2894184 ,
GSM2894185 ,
GSM2894186 ,
GSM2894187 ,
GSM2894188 ,
GSM2894189 ,
GSM2894190 ,
GSM2894191 ,
GSM2894192 ,
GSM2894193 ,
GSM3176390 ,
GSM3176391 ,
GSM3176392 ,
GSM3176393 ,
GSM3176394 ,
GSM3176395 ,
GSM3176396 ,
GSM3176397 ,
GSM3176398 ,
GSM3176399 ,
GSM3176400 ,
GSM3176401 ,
GSM3176402 ,
GSM3176403 ,
GSM3176404 ,
GSM3176405 ,
GSM3176406 ,
GSM3176407 ,
GSM3176408 ,
GSM3176409 ,
GSM3176410 ,
GSM3176411 ,
GSM3176412 ,
GSM3176413 ,
GSM3176414 ,
GSM3176415 ,
GSM3176416 ,
GSM3176417 ,
GSM3176418 ,
GSM3176419 ,
GSM3176420 ,
GSM3176421 ,
GSM3176422 ,
GSM3176423 ,
GSM4193097 ,
GSM4193098 ,
GSM4193099 ,
GSM4193100 ,
GSM4193101 ,
GSM4193102 ,
GSM4193103 ,
GSM4193104 ,
GSM4193105 ,
GSM4193106 ,
GSM4193107 ,
GSM4193108 ,
GSM4193109 ,
GSM4193110 ,
GSM4193111 ,
GSM4193112 ,
GSM4193113 ,
GSM4193114 ,
GSM4193115 ,
GSM4193116 ,
GSM4193117 ,
GSM4193118 ,
GSM4193119 ,
GSM4193120 ,
GSM4193121 ,
GSM4193122 ,
GSM4193123 ,
GSM4193124 ,
GSM4193125 ,
GSM4193126 ,
GSM4193127 ,
GSM4193128 ,
GSM4193129 ,
GSM4193130 ,
GSM4193131 ,
GSM4193132 ,
GSM4193133 ,
GSM4193134 ,
GSM4193135 ,
GSM4193136 ,
GSM4193137 ,
GSM4193138 ,
GSM4193139 ,
GSM4193140 ,
GSM4193141 ,
GSM4193142 Series (3)
GSE108272 Replacing C189 in the bZIP domain of Zta to S, T, V, and A changes DNA binding specificity to four types of double-stranded DNA (mC)
GSE115351 Mutating Zta (182N) changes sequence specific DNA binding (5mC + 5hmC)
GSE141050 bZIP dimers CREB1, ATF2, Zta, ATF3|cJun, and cFos|cJun prefer binding some DNA sequences containing 5-formylcytosine and 5-carboxylcytosine
Data table header descriptions ID SEQUENCE
Data table ID SEQUENCE AAAAAAAA
AAAAAAAA
AAAAAAAC
AAAAAAAC
AAAAAAAG
AAAAAAAG
AAAAAAAT
AAAAAAAT
AAAAAACA
AAAAAACA
AAAAAACC
AAAAAACC
AAAAAACG
AAAAAACG
AAAAAACT
AAAAAACT
AAAAAAGA
AAAAAAGA
AAAAAAGC
AAAAAAGC
AAAAAAGG
AAAAAAGG
AAAAAAGT
AAAAAAGT
AAAAAATA
AAAAAATA
AAAAAATC
AAAAAATC
AAAAAATG
AAAAAATG
AAAAAATT
AAAAAATT
AAAAACAA
AAAAACAA
AAAAACAC
AAAAACAC
AAAAACAG
AAAAACAG
AAAAACAT
AAAAACAT
65536 1152 Kbytes .Supplementary data files not provided
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