High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/.
Description
The Platform data table reflects a condensed representation of the expression array's replicate (SEQ_ID) features. The .ndf file is linked below as supplementary files. 111213_Brapa_V3_110211_YK_exp.ndf 111213_Brapa_V3_110211_YK_exp.ngd 111213_Brapa_V3_110211_YK_exp_HX12.ncd Probes are designed from 41,173 genes of Brassica rapa accession Chiifu-401-42, a Chinese cabbage (Nature Genetics 43,1035–1039).
Expression analysis of low-temperature and warming treated Chiifu and Kenshin inbred lines to identify high-temperature adaptation-related gene in Brassica rapa.
Transcriptome analysis for leaf morphology in Brassica rapa
Data table header descriptions
ID
Description
SPOT_ID
Data table
ID
Description
SPOT_ID
Bra000001
"PLN03191, PLN03191, Type I inositol-1,4,5-trisphosphate 5-phosphatase 2; Provisional"
Bra000001
Bra000002
"PLN00411, PLN00411, nodulin MtN21 family protein; Provisional"
Bra000002
Bra000003
NA
Bra000003
Bra000004
NA
Bra000004
Bra000005
"pfam01412, ArfGap, Putative GTPase activating protein for Arf. Putative zinc fingers with GTPase activating proteins (GAPs) towards the small GTPase, Arf. The GAP of ARD1 stimulates GTPase hydrolysis for ARD1 but not ARFs"
Bra000005
Bra000006
"PLN00035, PLN00035, histone H4; Provisional"
Bra000006
Bra000007
NA
Bra000007
Bra000008
"pfam02701, zf-Dof, Dof domain, zinc finger. The Dof domain is a zinc finger DNA-binding domain, that shows resemblance to the Cys2 zinc finger"
Bra000008
Bra000009
"pfam01158, Ribosomal_L36e, Ribosomal protein L36e"
Bra000009
Bra000010
"PTZ00281, PTZ00281, actin; Provisional"
Bra000010
Bra000011
NA
Bra000011
Bra000012
"pfam03514, GRAS, GRAS family transcription factor. Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable amino-terminus and a highly conserved carboxyl-terminus that contains five recognisable motifs. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction"
Less...
More...