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Platform GPL25397 Query DataSets for GPL25397
Status Public on Jul 14, 2020
Title GeoChip5.0
Technology type spotted oligonucleotide
Distribution custom-commercial
Organisms Bacteria; Archaea; Eukaryota; Viruses
Manufacturer University of Oklahoma
Manufacture protocol http://www.ou.edu/ieg/tools/protocols
 
 
Submission date Jul 29, 2018
Last update date Jul 14, 2020
Contact name Brandon T Hassett
E-mail(s) brandon.hassett1@gmail.com
Organization name University of Tromso
Department Arctic and Marine Biology
Street address Framstredet
City Tromso
ZIP/Postal code 9019
Country Norway
 
Samples (2) GSM3309953, GSM3309954
Series (1)
GSE117831 Survey functional genes in Arctic marine sediment communities

Data table header descriptions
ID
Gene category
Sub-category1
Sub-category2
Organism
Lineage
Genbank ID
GI
SPOT_ID

Data table
ID Gene category Sub-category1 Sub-category2 Organism Lineage Genbank ID GI SPOT_ID
ncbi-gi:2473 Carbon Cycling Carbon degradation Cutin Ascochyta rabiei superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Dothideomycetes;order:Pleosporales;family:Didymellaceae;genus:Didymella;species:Didymella rabiei; ncbi-gi:2473 2473
ncbi-gi:2776 secondary metabolism antioxidant enzyme NA Pichia angusta superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Pichia; ncbi-gi:2776 2776
ncbi-gi:2788 Carbon Cycling Carbon degradation Starch Amorphotheca resinae superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;family:Myxotrichaceae;genus:Amorphotheca; ncbi-gi:2788 2788
ncbi-gi:3138 secondary metabolism antioxidant enzyme NA Phanerochaete chrysosporium superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Corticiales;family:Corticiaceae;genus:Phanerochaete; ncbi-gi:3138 3138
ncbi-gi:3153 secondary metabolism antioxidant enzyme NA Phanerochaete chrysosporium superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Corticiales;family:Corticiaceae;genus:Phanerochaete; ncbi-gi:3153 3153
ncbi-gi:4848 Carbon Cycling Carbon degradation Starch Saccharomycopsis fibuligera superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycopsidaceae;genus:Saccharomycopsis; ncbi-gi:4848 4848
ncbi-gi:15075 Virus Prokaryotic REPLICATION Enterobacteria phage fr superkingdom:Viruses;family:Leviviridae;genus:Levivirus;species:Enterobacteria phage MS2; ncbi-gi:15075 15075
ncbi-gi:15196 Virus Prokaryotic HOST RECOGNITION/STRUCTURAL Enterobacteria phage T2 superkingdom:Viruses;order:Caudovirales;family:Myoviridae;genus:T4likevirus;species:Enterobacteria phage T4 sensu lato; ncbi-gi:15196 15196
ncbi-gi:38702 Stress Oxygen limitation NA Azorhizobium caulinodans superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; ncbi-gi:38702 38702
ncbi-gi:38706 Stress Nitrogen limitation NA Azorhizobium caulinodans ORS 571 superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Xanthobacteraceae;genus:Azorhizobium;species:Azorhizobium caulinodans; ncbi-gi:38706 38706
ncbi-gi:39059 Carbon Cycling Carbon degradation Hemicellulose Arthrobacter sp. superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Micrococcaceae;genus:Arthrobacter; ncbi-gi:39059 39059
ncbi-gi:39412 Carbon Cycling Carbon degradation Starch Bacillus circulans superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; ncbi-gi:39412 39412
ncbi-gi:39420 Carbon Cycling Carbon degradation Starch Bacillus circulans superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; ncbi-gi:39420 39420
ncbi-gi:39566 Carbon Cycling Carbon degradation Starch Bacillus licheniformis superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; ncbi-gi:39566 39566
ncbi-gi:39625 Carbon Cycling Carbon degradation Starch Paenibacillus macerans superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Paenibacillaceae;genus:Paenibacillus; ncbi-gi:39625 39625
ncbi-gi:39839 Carbon Cycling Carbon degradation Starch Bacillus sp. superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus; ncbi-gi:39839 39839
ncbi-gi:40431 Virulence Antibiotic resistance Degradation Citrobacter koseri superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter; ncbi-gi:40431 40431
ncbi-gi:43913 Carbon Cycling Carbon degradation Starch Klebsiella pneumoniae superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella; ncbi-gi:43913 43913
ncbi-gi:45543 Carbon Cycling Carbon fixation Calvin cycle Prochlorothrix hollandica superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorotrichaceae;genus:Prochlorothrix; ncbi-gi:45543 45543
ncbi-gi:45990 Virulence Antibiotic resistance Degradation Rhodobacter capsulatus superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter; ncbi-gi:45990 45990

Total number of rows: 63403

Table truncated, full table size 15960 Kbytes.




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