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Status |
Public on Oct 18, 2018 |
Title |
Agilent-032034 VPC Human 180K v3 (Ensembl 77 / Gencode 21 / GRCh38 annotation) |
Technology type |
in situ oligonucleotide |
Distribution |
custom-commercial |
Organism |
Homo sapiens |
Manufacturer |
Agilent |
Manufacture protocol |
SurePrint G3 4x180K format, feature and microarray designed using eArray
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Submission date |
Oct 17, 2018 |
Last update date |
Oct 18, 2018 |
Contact name |
Colleen Nelson |
Organization name |
Queensland University of Technology; University of British Columbia
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Department |
Institute of Health and Biomedical Innovation; Vancouver Prostate Centre
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Street address |
199 Ipswich Road
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City |
Brisbane |
State/province |
Queensland |
ZIP/Postal code |
4102 |
Country |
Australia |
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Samples (49)
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GSM3569269, GSM3569270, GSM3569271, GSM3569272, GSM3569273, GSM3569274
GSM3569283, GSM3569284, GSM3569285, GSM3569286, GSM3569287, GSM3569288, GSM4258714, GSM4258715, GSM4258716, GSM4258717, GSM4258718, GSM4258719, GSM4258720, GSM4258721, GSM4258722, GSM4258723, GSM4258724, GSM4258725, GSM7032051, GSM7032052, GSM7032053, GSM7032054, GSM7032055, GSM7032056, GSM7032057, GSM7032058, GSM7032059, GSM7032060, GSM7032061, GSM7032124, GSM7032125, GSM7032126, GSM7032127, GSM7032128, GSM7032129, GSM7032130, GSM7032131, GSM7032132, GSM7032133, GSM7032134, GSM7032135, GSM7032136, GSM7032137
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Series (5)
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GSE125337 |
YB-1 RIP.chip - Co-immunoprecipitation of RNAs present in YB-1 containing RNP granules in LNCaP cells in FBS, CSS and DHT culture |
GSE125338 |
Transcriptome changes upon androgen deprivation and DHT stimulation in LNCaP cells |
GSE125339 |
YB-1 knock.down - siRNA driven YBX1 knock.down in LNCaP cells in std FBS culture |
GSE125341 |
Transcriptomic profile of YB-1 regulated downstream targets in LNCaP prostate cancer cells |
GSE143408 |
Longitudinal mRNA expression analysis of the adaptive response to Enzalutimde in LNCaP cells |
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Relations |
Alternative to |
GPL16604 |
Data table header descriptions |
ID |
unique probeID |
chr |
Reporter chromosome (blat:hg38) |
start |
Reporter chromosome start position (blat:hg38) |
end |
Reporter chromosome end position (blat:hg38) |
strand |
Reporter chromosome strand |
symbol |
Ensembl 77 gene symbol |
geneDescription |
Ensembl 77 gene description |
EnsemblGeneID |
Ensembl 77 geneID |
geneBiotype |
Ensembl 77 gene biotype |
FeatureNum |
Feature Number on Array |
SPOT_ID |
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Data table |
ID |
chr |
start |
end |
strand |
symbol |
geneDescription |
EnsemblGeneID |
geneBiotype |
FeatureNum |
SPOT_ID |
A_14_P100100 |
chr14 |
23543729 |
23543789 |
+ |
THTPA |
thiamine triphosphatase [Source:EntrezGene;Acc:79178] |
ENSG00000157306.12 |
processed_transcript |
23957 |
A_14_P100100 |
A_14_P100208 |
chr11 |
75801449 |
75801509 |
+ |
DGAT2 |
diacylglycerol O-acyltransferase 2 [Source:HGNC Symbol;Acc:HGNC:16940] |
ENSG00000062282.12 |
protein_coding |
8274 |
A_14_P100208 |
A_14_P100325 |
chrX |
103610199 |
103610259 |
+ |
TCEAL3 |
transcription elongation factor A (SII)-like 3 [Source:HGNC Symbol;Acc:HGNC:28247] |
ENSG00000196507.8 |
protein_coding |
3209 |
A_14_P100325 |
A_14_P100335 |
chr1 |
220662085 |
220662145 |
+ |
MARK1 |
MAP/microtubule affinity-regulating kinase 1 [Source:HGNC Symbol;Acc:HGNC:6896] |
ENSG00000116141.13 |
protein_coding |
28581 |
A_14_P100335 |
A_14_P100337 |
chr12 |
6820541 |
6820593 |
+ |
CD4 |
CD4 molecule [Source:HGNC Symbol;Acc:HGNC:1678] |
ENSG00000010610.7 |
protein_coding |
80135 |
A_14_P100337 |
A_14_P100385 |
chr16 |
56608717 |
56608769 |
+ |
MT2A |
metallothionein 2A [Source:HGNC Symbol;Acc:HGNC:7406] |
ENSG00000125148.6 |
protein_coding |
113254 |
A_14_P100385 |
A_14_P100389 |
chr1 |
156620517 |
156620577 |
+ |
HAPLN2 |
hyaluronan and proteoglycan link protein 2 [Source:HGNC Symbol;Acc:HGNC:17410] |
ENSG00000132702.10 |
protein_coding |
34022 |
A_14_P100389 |
A_14_P100419 |
chr12 |
116790068 |
116790128 |
+ |
RNFT2 |
"ring finger protein, transmembrane 2 [Source:HGNC Symbol;Acc:HGNC:25905]" |
ENSG00000135119.12 |
protein_coding |
121560 |
A_14_P100419 |
A_14_P100529 |
chr4 |
48489138 |
48489198 |
+ |
SLC10A4 |
"solute carrier family 10, member 4 [Source:HGNC Symbol;Acc:HGNC:22980]" |
ENSG00000145248.6 |
protein_coding |
164472 |
A_14_P100529 |
A_14_P100533 |
chr9 |
137195408 |
137195455 |
+ |
NULL |
NULL |
NULL |
NULL |
156817 |
A_14_P100533 |
A_14_P100535 |
chr2 |
23708474 |
23708534 |
+ |
KLHL29 |
kelch-like family member 29 [Source:HGNC Symbol;Acc:HGNC:29404] |
ENSG00000119771.12 |
protein_coding |
13652 |
A_14_P100535 |
A_14_P100560 |
chr7 |
139957676 |
139957736 |
+ |
TBXAS1 |
thromboxane A synthase 1 (platelet) [Source:HGNC Symbol;Acc:HGNC:11609] |
ENSG00000059377.13 |
protein_coding |
4178 |
A_14_P100560 |
A_14_P100627 |
chr10 |
92297066 |
92297126 |
+ |
MARCH5 |
membrane-associated ring finger (C3HC4) 5 [Source:HGNC Symbol;Acc:HGNC:26025] |
ENSG00000198060.7 |
protein_coding |
90756 |
A_14_P100627 |
A_14_P100804 |
chr14 |
64031067 |
64031127 |
+ |
SYNE2 |
"spectrin repeat containing, nuclear envelope 2 [Source:HGNC Symbol;Acc:HGNC:17084]" |
ENSG00000054654.13 |
protein_coding |
28791 |
A_14_P100804 |
A_14_P100819 |
chr3 |
32357454 |
32357513 |
+ |
CMTM8 |
CKLF-like MARVEL transmembrane domain containing 8 [Source:HGNC Symbol;Acc:HGNC:19179] |
ENSG00000170293.6 |
protein_coding |
138586 |
A_14_P100819 |
A_14_P100933 |
chr18 |
48860222 |
48860282 |
+ |
CTIF |
CBP80/20-dependent translation initiation factor [Source:HGNC Symbol;Acc:HGNC:23925] |
ENSG00000134030.11 |
protein_coding |
6734 |
A_14_P100933 |
A_14_P100966 |
chr1 |
171314240 |
171314300 |
+ |
FMO4 |
flavin containing monooxygenase 4 [Source:HGNC Symbol;Acc:HGNC:3772] |
ENSG00000076258.7 |
protein_coding |
113556 |
A_14_P100966 |
A_14_P100985 |
chr15 |
63050919 |
63050979 |
+ |
TPM1;RP11-244F12.3 |
tropomyosin 1 (alpha) [Source:HGNC Symbol;Acc:HGNC:12010]; |
ENSG00000140416.17;ENSG00000259498.1 |
protein_coding;antisense |
136905 |
A_14_P100985 |
A_14_P101047 |
chr18 |
59647538 |
59647598 |
+ |
CCBE1 |
collagen and calcium binding EGF domains 1 [Source:HGNC Symbol;Acc:HGNC:29426] |
ENSG00000183287.11 |
protein_coding |
128013 |
A_14_P101047 |
A_14_P101187 |
chr10 |
23120914 |
23120974 |
+ |
MSRB2 |
methionine sulfoxide reductase B2 [Source:HGNC Symbol;Acc:HGNC:17061] |
ENSG00000148450.10 |
protein_coding |
54491 |
A_14_P101187 |
Total number of rows: 175281
Table truncated, full table size 27384 Kbytes.
Supplementary data files not provided |
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