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Platform GPL25684 Query DataSets for GPL25684
Status Public on Oct 18, 2018
Title Agilent-032034 VPC Human 180K v3 (Ensembl 77 / Gencode 21 / GRCh38 annotation)
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Agilent
Manufacture protocol SurePrint G3 4x180K format, feature and microarray designed using eArray
 
 
Submission date Oct 17, 2018
Last update date Oct 18, 2018
Contact name Colleen Nelson
Organization name Queensland University of Technology; University of British Columbia
Department Institute of Health and Biomedical Innovation; Vancouver Prostate Centre
Street address 199 Ipswich Road
City Brisbane
State/province Queensland
ZIP/Postal code 4102
Country Australia
 
Samples (49) GSM3569269, GSM3569270, GSM3569271, GSM3569272, GSM3569273, GSM3569274 
Series (5)
GSE125337 YB-1 RIP.chip - Co-immunoprecipitation of RNAs present in YB-1 containing RNP granules in LNCaP cells in FBS, CSS and DHT culture
GSE125338 Transcriptome changes upon androgen deprivation and DHT stimulation in LNCaP cells
GSE125339 YB-1 knock.down - siRNA driven YBX1 knock.down in LNCaP cells in std FBS culture
Relations
Alternative to GPL16604

Data table header descriptions
ID unique probeID
chr Reporter chromosome (blat:hg38)
start Reporter chromosome start position (blat:hg38)
end Reporter chromosome end position (blat:hg38)
strand Reporter chromosome strand
symbol Ensembl 77 gene symbol
geneDescription Ensembl 77 gene description
EnsemblGeneID Ensembl 77 geneID
geneBiotype Ensembl 77 gene biotype
FeatureNum Feature Number on Array
SPOT_ID

Data table
ID chr start end strand symbol geneDescription EnsemblGeneID geneBiotype FeatureNum SPOT_ID
A_14_P100100 chr14 23543729 23543789 + THTPA thiamine triphosphatase [Source:EntrezGene;Acc:79178] ENSG00000157306.12 processed_transcript 23957 A_14_P100100
A_14_P100208 chr11 75801449 75801509 + DGAT2 diacylglycerol O-acyltransferase 2 [Source:HGNC Symbol;Acc:HGNC:16940] ENSG00000062282.12 protein_coding 8274 A_14_P100208
A_14_P100325 chrX 103610199 103610259 + TCEAL3 transcription elongation factor A (SII)-like 3 [Source:HGNC Symbol;Acc:HGNC:28247] ENSG00000196507.8 protein_coding 3209 A_14_P100325
A_14_P100335 chr1 220662085 220662145 + MARK1 MAP/microtubule affinity-regulating kinase 1 [Source:HGNC Symbol;Acc:HGNC:6896] ENSG00000116141.13 protein_coding 28581 A_14_P100335
A_14_P100337 chr12 6820541 6820593 + CD4 CD4 molecule [Source:HGNC Symbol;Acc:HGNC:1678] ENSG00000010610.7 protein_coding 80135 A_14_P100337
A_14_P100385 chr16 56608717 56608769 + MT2A metallothionein 2A [Source:HGNC Symbol;Acc:HGNC:7406] ENSG00000125148.6 protein_coding 113254 A_14_P100385
A_14_P100389 chr1 156620517 156620577 + HAPLN2 hyaluronan and proteoglycan link protein 2 [Source:HGNC Symbol;Acc:HGNC:17410] ENSG00000132702.10 protein_coding 34022 A_14_P100389
A_14_P100419 chr12 116790068 116790128 + RNFT2 "ring finger protein, transmembrane 2 [Source:HGNC Symbol;Acc:HGNC:25905]" ENSG00000135119.12 protein_coding 121560 A_14_P100419
A_14_P100529 chr4 48489138 48489198 + SLC10A4 "solute carrier family 10, member 4 [Source:HGNC Symbol;Acc:HGNC:22980]" ENSG00000145248.6 protein_coding 164472 A_14_P100529
A_14_P100533 chr9 137195408 137195455 + NULL NULL NULL NULL 156817 A_14_P100533
A_14_P100535 chr2 23708474 23708534 + KLHL29 kelch-like family member 29 [Source:HGNC Symbol;Acc:HGNC:29404] ENSG00000119771.12 protein_coding 13652 A_14_P100535
A_14_P100560 chr7 139957676 139957736 + TBXAS1 thromboxane A synthase 1 (platelet) [Source:HGNC Symbol;Acc:HGNC:11609] ENSG00000059377.13 protein_coding 4178 A_14_P100560
A_14_P100627 chr10 92297066 92297126 + MARCH5 membrane-associated ring finger (C3HC4) 5 [Source:HGNC Symbol;Acc:HGNC:26025] ENSG00000198060.7 protein_coding 90756 A_14_P100627
A_14_P100804 chr14 64031067 64031127 + SYNE2 "spectrin repeat containing, nuclear envelope 2 [Source:HGNC Symbol;Acc:HGNC:17084]" ENSG00000054654.13 protein_coding 28791 A_14_P100804
A_14_P100819 chr3 32357454 32357513 + CMTM8 CKLF-like MARVEL transmembrane domain containing 8 [Source:HGNC Symbol;Acc:HGNC:19179] ENSG00000170293.6 protein_coding 138586 A_14_P100819
A_14_P100933 chr18 48860222 48860282 + CTIF CBP80/20-dependent translation initiation factor [Source:HGNC Symbol;Acc:HGNC:23925] ENSG00000134030.11 protein_coding 6734 A_14_P100933
A_14_P100966 chr1 171314240 171314300 + FMO4 flavin containing monooxygenase 4 [Source:HGNC Symbol;Acc:HGNC:3772] ENSG00000076258.7 protein_coding 113556 A_14_P100966
A_14_P100985 chr15 63050919 63050979 + TPM1;RP11-244F12.3 tropomyosin 1 (alpha) [Source:HGNC Symbol;Acc:HGNC:12010]; ENSG00000140416.17;ENSG00000259498.1 protein_coding;antisense 136905 A_14_P100985
A_14_P101047 chr18 59647538 59647598 + CCBE1 collagen and calcium binding EGF domains 1 [Source:HGNC Symbol;Acc:HGNC:29426] ENSG00000183287.11 protein_coding 128013 A_14_P101047
A_14_P101187 chr10 23120914 23120974 + MSRB2 methionine sulfoxide reductase B2 [Source:HGNC Symbol;Acc:HGNC:17061] ENSG00000148450.10 protein_coding 54491 A_14_P101187

Total number of rows: 175281

Table truncated, full table size 27384 Kbytes.




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Supplementary data files not provided

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