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Platform GPL25797 Query DataSets for GPL25797
Status Public on Nov 14, 2018
Title Agilent-071114_Catma_IRHS_v1
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Arabidopsis thaliana
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Sondes catma-URGV + celles Etienne Bucher Epicenter

Arrays of this design have barcodes that begin with 16071114 or 2571114.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Nov 13, 2018
Last update date Nov 30, 2018
Contact name Sandra Pelletier
E-mail(s) sandra.pelletier@inra.fr
Organization name INRA
Lab IRHS
Street address 42, rue Georges Morel - BP 60057
City BEAUCOUZE
ZIP/Postal code 49045
Country France
 
Samples (20) GSM3498580, GSM3498581, GSM3498582, GSM3498583, GSM3498584, GSM3498585 
Series (1)
GSE123073 Biotic stress-induced priming and de-priming of transcriptional memory in Arabidopsis

Data table header descriptions
ID Agilent feature number
NAME NAME
COL Column
ROW Row
SPOT_ID Spot identifier
CONTROL_TYPE Control type
REFSEQ RefSeqAccession
ORF Locus tag
LOCUSLINK_ID LocuslinkID
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
UNIGENE_ID UnigeneID
ENSEMBL_ID EnsemblID
TIGR_ID TIGRID
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
CYTOBAND Cytoband
DESCRIPTION Description
GO_ID GoIDs
SEQUENCE Sequence

Data table
ID NAME COL ROW SPOT_ID CONTROL_TYPE REFSEQ ORF LOCUSLINK_ID GENE_SYMBOL GENE_NAME UNIGENE_ID ENSEMBL_ID TIGR_ID ACCESSION_STRING CHROMOSOMAL_LOCATION CYTOBAND DESCRIPTION GO_ID SEQUENCE
101894 Catma_IRHS_00001 233 213 Catma_IRHS_00001 FALSE AT1G01010 AT1G01010 NA NA NA NA NA NA NA unmapped NA NA NA TTCCTTACTTGGCACCTTATGAAAATGAGTCGGAGATGATTTGGAAGCATGTGATTGAAG
175520 Catma_IRHS_00001_r 16 182 Catma_IRHS_00001_r FALSE AT1G01010 AT1G01010 NA NA NA NA NA NA NA unmapped NA NA NA TTCTTCAATCACATGCTTCCAAATCATCTCCGACTCATTTTCATAAGGTGCCAAGTAAGG
7109 Catma_IRHS_00002 512 63 Catma_IRHS_00002 FALSE AT1G01030 AT1G01030 NA NA NA NA NA NA NA unmapped NA NA NA GGAAATCACCAACGTTCCTATTATAACACCCAGCGTCAAGAGTTCGTAG
81389 Catma_IRHS_00002_r 293 84 Catma_IRHS_00002_r FALSE AT1G01030 AT1G01030 NA NA NA NA NA NA NA unmapped NA NA NA CTACGAACTCTTGACGCTGGGTGTTATAATAGGAACGTTGGTGATTTCC
123694 Catma_IRHS_00003 169 133 Catma_IRHS_00003 FALSE AT1G01040 AT1G01040 NA NA NA NA NA NA NA unmapped NA NA NA AAAGAGATTTACGTTTGGGGTAAGAGTTAATACGAGCGATAGAGGATGGACCGA
141396 Catma_IRHS_00003_r 117 89 Catma_IRHS_00003_r FALSE AT1G01040 AT1G01040 NA NA NA NA NA NA NA unmapped NA NA NA TCGGTCCATCCTCTATCGCTCGTATTAACTCTTACCCCAAACGTAAATCTCTTT
6350 Catma_IRHS_00004 514 221 Catma_IRHS_00004 FALSE AT1G01050 AT1G01050 NA NA NA NA NA NA NA unmapped NA NA NA GCGTTGAAGCTTCTCCTCAGAAGATTTCTGCAGCATCTATGTTTCTGTTACTTTTCATTG
25251 Catma_IRHS_00004_r 458 160 Catma_IRHS_00004_r FALSE AT1G01050 AT1G01050 NA NA NA NA NA NA NA unmapped NA NA NA TTATCAATGAAAAGTAACAGAAACATAGATGCTGCAGAAATCTTCTGAGGAGAAGCTTCA
28295 Catma_IRHS_00005 449 192 Catma_IRHS_00005 FALSE AT1G01060 AT1G01060 NA NA NA NA NA NA NA unmapped NA NA NA GTCAGGTTCTGTACCATATTACCCCATGTCTTGTCTCTTGTCTCTGTTTG
47895 Catma_IRHS_00005_r 392 91 Catma_IRHS_00005_r FALSE AT1G01060 AT1G01060 NA NA NA NA NA NA NA unmapped NA NA NA CAAACAGAGACAAGAGACAAGACATGGGGTAATATGGTACAGAACCTGAC
57832 Catma_IRHS_00006 362 278 Catma_IRHS_00006 FALSE AT1G01070 AT1G01070 NA NA NA NA NA NA NA unmapped NA NA NA GGAATGGATAACGAAGCTCAATATACTACTCCTAATAAGGATAACGACTCTAAGTCGC
150552 Catma_IRHS_00006_r 90 137 Catma_IRHS_00006_r FALSE AT1G01070 AT1G01070 NA NA NA NA NA NA NA unmapped NA NA NA GCGACTTAGAGTCGTTATCCTTATTAGGAGTAGTATATTGAGCTTCGTTATCCATTCC
128660 Catma_IRHS_00007 154 62 Catma_IRHS_00007 FALSE AT1G01080 AT1G01080 NA NA NA NA NA NA NA unmapped NA NA NA AAACCACTTTAGCAAGTTTGGCACAATCGTAAGCACGAGAGTGTTACATGATCGTAAGA
89258 Catma_IRHS_00007_r 270 325 Catma_IRHS_00007_r FALSE AT1G01080 AT1G01080 NA NA NA NA NA NA NA unmapped NA NA NA TCTTACGATCATGTAACACTCTCGTGCTTACGATTGTGCCAAACTTGCTAAAGTGGTTT
164521 Catma_IRHS_00008 49 79 Catma_IRHS_00008 FALSE AT1G01090 AT1G01090 NA NA NA NA NA NA NA unmapped NA NA NA TGCATTTGGGATGCCTGGTGTTCATGTTGACGGTATGGATGTCTTG
76072 Catma_IRHS_00008_r 309 177 Catma_IRHS_00008_r FALSE AT1G01090 AT1G01090 NA NA NA NA NA NA NA unmapped NA NA NA CAAGACATCCATACCGTCAACATGAACACCAGGCATCCCAAATGCA
18049 Catma_IRHS_00009 479 284 Catma_IRHS_00009 FALSE AT1G01100 AT1G01100 NA NA NA NA NA NA NA unmapped NA NA NA CGGTTTGTTTGACTAAACGCAGTCACTTGTCTTTCTTCTTTGTAGTTGGATATTG
54237 Catma_IRHS_00009_r 373 327 Catma_IRHS_00009_r FALSE AT1G01100 AT1G01100 NA NA NA NA NA NA NA unmapped NA NA NA CAATATCCAACTACAAAGAAGAAAGACAAGTGACTGCGTTTAGTCAAACAAACCG
80729 Catma_IRHS_00010 295 44 Catma_IRHS_00010 FALSE AT1E00120 NA NA NA NA NA NA NA unmapped NA NA NA TCAGCATCTAAGACACTCGCACCGAGGCGGATTTATTACGCAAGA
48424 Catma_IRHS_00010_r 390 54 Catma_IRHS_00010_r FALSE AT1E00120 NA NA NA NA NA NA NA unmapped NA NA NA TCTTGCGTAATAAATCCGCCTCGGTGCGAGTGTCTTAGATGCTGA

Total number of rows: 155747

Table truncated, full table size 26137 Kbytes.




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