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Platform GPL27511 Query DataSets for GPL27511
Status Public on Sep 01, 2020
Title Agilent-032948 E. coli Gene Expression Microarray_VK1 020097
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Escherichia coli str. K-12 substr. MG1655
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Sep 23, 2019
Last update date Sep 01, 2020
Contact name Ander Hernández Plágaro
Organization name University of the Basque Country
Department Immunology, Microbiology and Parasitology
Lab Bacterial response to stress
Street address Barrio Sarriena S/N
City Leioa
State/province Bizkaia
ZIP/Postal code 48940
Country Spain
 
Samples (8) GSM4090953, GSM4090954, GSM4090955, GSM4090956, GSM4090957, GSM4090958 
Series (1)
GSE137882 Analysis of Escherichia coli adaptation to a sublethal concentration of sodium bisulfite

Data table header descriptions
ID
Row
Col
accessions
chr_coord
SubTypeMask
SubTypeName
Start
SEQUENCE
ProbeUID
ControlType
ProbeName
GeneName
ORF ORF Name
Description
SPOT_ID

Data table
ID Row Col accessions chr_coord SubTypeMask SubTypeName Start SEQUENCE ProbeUID ControlType ProbeName GeneName ORF Description SPOT_ID
1 1 1 260 BrightCorner 0 0 1 GE_BrightCorner GE_BrightCorner GE_BrightCorner
2 1 2 66 Structural 0 1 1 DarkCorner DarkCorner DarkCorner
3 1 3 66 Structural 0 1 1 DarkCorner DarkCorner DarkCorner
4 1 4 cmr|c_1261|asap|ABR-0077362 unmapped 0 27 AAACGGGTAATCACTGTCTGTGACCGGGAAGCGGATATCTGGCATTACCTGCATTATAAA 3 0 A_07_P040595 c_1261 c_1261 cmr|Hypothetical protein [c_1261] A_07_P040595
5 1 5 cmr|b1881|asap|ABE-0006278 ec|chr:1964735-1964676 0 326 ACTGGTAACAGATACACGACAATTTCTGGCAGATGTACCCGCGCATACCAGCTTTACTAA 5 0 A_07_P016084 cheZ b1881 cmr|chemotactic response; CheY protein phophatase; antagonist of CheY as switch regulator [b1881] A_07_P016084
6 1 6 66 Structural 0 6 -1 (-)3xSLv1 NegativeControl (-)3xSLv1
7 1 7 cmr|b3774|asap|ABE-0012331 ec|chr:3957400-3957459 0 1407 ATTGAGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTT 8 0 A_07_P005751 ilvC b3774 cmr|ketol-acid reductoisomerase [b3774] A_07_P005751
8 1 8 cmr|b0095|asap|ABE-0000333 ec|chr:105665-105724 0 360 AAAGATTTGGGTATCCTGACCGTTGCTGTCGTCACTAAGCCTTTCAACTTTGAAGGCAAG 9 0 A_07_P002447 ftsZ b0095 cmr|cell division; forms circumferential ring; tubulin-like GTP-binding protein and GTPase [b0095] A_07_P002447
9 1 9 asap|ACA-0244191 unmapped 0 633 AATCATGGTGAACGCATCGTGCTGCGTTTACTAGACAAAAATAGCGTTAGTCTCGATCTT 11 0 A_07_P059001 ACA-0244191 ACA-0244191 asap|Type II secretion pathway related protein [] A_07_P059001
10 1 10 66 Structural 0 6 -1 (-)3xSLv1 NegativeControl (-)3xSLv1
11 1 11 cmr|c_2012|asap|ABR-0078127 unmapped 0 950 CATGATGCAAAAAATCACCCATGAAGAGACGCATTCTCGCAATCTTATTATTCCTGCCCG 13 0 A_07_P042320 malI c_2012 cmr|Maltose regulon Regulatory protein malI [c_2012] A_07_P042320
12 1 12 unmapped 0 0 GGAAAAGCGTGCCAACATTGAAGATTGAGCCAGTTTGTTAGCAATCTCAAAGATACGTCA 2 0 CUST_19_PI426246122 VK62 VK62 Unknown CUST_19_PI426246122
13 1 13 cmr|ECs3860|asap|ACA-0133912 unmapped 0 1041 TGGGTTGATGAAAAAGCATTTGGAGCCGCGAAATTTACCAGTGTCTTAAAACAAATTGCA 16 0 A_07_P056442 ECs3860 ECs3860 cmr|putative adherence factor [ECs3860] A_07_P056442
14 1 14 cmr|ECs0843|cmr|ECs1807|cmr|ECs2942|asap|ACA-0130754 unmapped 0 153 AACGTGAAATACCGTTATGAGTTTACGGACACACTGGGGCTGATTACGTCCTTCAGTTAT 18 0 A_07_P056884 ECs0843 ECs0843 cmr|putative outer membrane protein precursor [ECs0843] A_07_P056884
15 1 15 cmr|b1373|cmr|b1546|asap|ABE-0004597|asap|ABE-0005166 ec|chr:1430498-1430557 0 63 AATGAATTTATTGGTGAAGGTGATGCATATATTCCGCCTCATACAGGTCTGCCAGCAAAC 20 0 A_07_P014841 tfaR b1373 cmr|orf A_07_P014841
16 1 16 cmr|ECs4532|asap|ACA-0134606 unmapped 0 1301 GAAAATGCATAACCATTATGCGTACATCTACAACGAACTGGTGTGGAACGTGCTCAAGGA 22 0 A_07_P060242 ECs4532 ECs4532 cmr|hypothetical protein [ECs4532] A_07_P060242
17 1 17 cmr|b3793|asap|ABE-0012392 ec|chr:3977889-3977948 0 1265 CGCAAAACTGTTGTACTGGCTTTTTGAAAGCGCCGGACTCATTCATAAACGTACAAAATC 24 0 A_07_P005852 wzyE b3793 cmr|TDP-Fuc4NAc:lipidII transferase; synthesis of enterobacterial common antigen [b3793] A_07_P005852
18 1 18 cmr|b3519|asap|ABE-0011497 ec|chr:3669109-3669168 0 1494 CAGTTCTATCTGGAACAGCACAAACTGATCGAAAAATACCATATTGCCGATGGTGTTCCC 26 0 A_07_P007526 treF b3519 cmr|cytoplasmic trehalase [b3519] A_07_P007526
19 1 19 cmr|b0556|cmr|b1362|asap|ABE-0285031|asap|ABE-0285049 ec|chr:577577-577636 0 247 GTGATGATGTTGCCGCTGGTCGTCGTCGGTTGCACATCAAAGCAGTCTGTCAGTCAGTGC 28 0 A_07_P010301 rzpD b0556 cmr|bacteriophage lambda endopeptidase homolog [b0556] A_07_P010301
20 1 20 cmr|b1617|asap|ABE-0005410 ec|chr:1692553-1692494 0 1542 TCAATGTACACCGACATGTGGAGTGAAGAGTATCAGTGTGCATGGCTGGATATGTATCAC 30 0 A_07_P020716 uidA b1617 cmr|beta-D-glucuronidase [b1617] A_07_P020716

Total number of rows: 15683

Table truncated, full table size 2538 Kbytes.




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