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Platform GPL28152 Query DataSets for GPL28152
Status Public on Feb 16, 2020
Title Illumina Goat IGGC_conf_60K Genotyping BeadChip (GoatIGGC_conf_60K)
Technology type oligonucleotide beads
Distribution commercial
Organism Capra hircus
Manufacturer Illumina, Inc.
Manufacture protocol See manufacturer's website
 
 
Submission date Feb 16, 2020
Last update date Feb 16, 2020
Organization Illumina Inc.
E-mail(s) expression@illumina.com, techsupport@illumina.com
Phone 1 800 809 4566
URL http://www.illumina.com
Street address 9885 Towne Centre Drive
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
 
Samples (372) GSM4317953, GSM4317954, GSM4317955, GSM4317956, GSM4317957, GSM4317958 
Series (2)
GSE145419 Genome-Wide Association Study Towards Genomic Predictive Power for High Production and Quality of Milk in American Alpine Goats
GSE176157 Genetic characterization of Slovenian indigenous goat breed Dreznica goat

Data table header descriptions
ID
SPOT_ID
IlmnStrand
SNP
AddressA_ID
AlleleA_ProbeSeq
AddressB_ID
AlleleB_ProbeSeq
GenomeBuild
Chr
MapInfo
Ploidy
Species
Source
SourceVersion
SourceStrand
SourceSeq
TopGenomicSeq
BeadSetID

Data table
ID SPOT_ID IlmnStrand SNP AddressA_ID AlleleA_ProbeSeq AddressB_ID AlleleB_ProbeSeq GenomeBuild Chr MapInfo Ploidy Species Source SourceVersion SourceStrand SourceSeq TopGenomicSeq BeadSetID
snp1-scaffold1-2170 snp1-scaffold1-2170-0_T_F_1995023486 TOP [A/C] 69774360 ATGAAAACAATCTAACGTCCATCACAATAAAGCAGCTTAATAAGCAGTGA 0 0 0 diploid other Unknown 0 TOP TAGCTAAAGGATGAAAACAATCTAACGTCCATCACAATAAAGCAGCTTAATAAGCAGTGA[A/C]ATATTCATTTAACGAAATACTAATAGACCATGAAAATCAATGAACTATAACTACACAGAT TAGCTAAAGGATGAAAACAATCTAACGTCCATCACAATAAAGCAGCTTAATAAGCAGTGA[A/C]ATATTCATTTAACGAAATACTAATAGACCATGAAAATCAATGAACTATAACTACACAGAT 622
snp1-scaffold708-1421224 snp1-scaffold708-1421224-0_T_R_1995509763 TOP [A/G] 34698390 GGTGCAAGTTTGCAGACAGACTCTACTTCATTAGCTCCGAATCCTAGAAC 0 0 0 diploid other Unknown 0 BOT ACCTGTAAGATGAGGGGTTTGGAGCAGAAGACTTACTTGATGGGCTCCATCAGGCATGAA[T/C]GTTCTAGGATTCGGAGCTAATGAAGTAGAGTCTGTCTGCAAACTTGCACCCCTCAACCGC GCGGTTGAGGGGTGCAAGTTTGCAGACAGACTCTACTTCATTAGCTCCGAATCCTAGAAC[A/G]TTCATGCCTGATGGAGCCCATCAAGTAAGTCTTCTGCTCCAAACCCCTCATCTTACAGGT 622
snp10-scaffold1-352655 snp10-scaffold1-352655-0_T_F_1995023504 TOP [A/G] 56795354 TGAAAGAATTTCCAGTGTGCCAGGTATTCGTTGCTTATACCCAGTACCTT 0 0 0 diploid other Unknown 0 TOP GTTTAATGACTGAAAGAATTTCCAGTGTGCCAGGTATTCGTTGCTTATACCCAGTACCTT[A/G]CAACTCTTAAAACAACCCCAGGAGGTAACTGTTGTTTTAACCTCTTTTTTACAGATGAAG GTTTAATGACTGAAAGAATTTCCAGTGTGCCAGGTATTCGTTGCTTATACCCAGTACCTT[A/G]CAACTCTTAAAACAACCCCAGGAGGTAACTGTTGTTTTAACCTCTTTTTTACAGATGAAG 622
snp1000-scaffold1026-533890 snp1000-scaffold1026-533890-0_T_F_1995019728 TOP [A/G] 51769445 ATGACTTGAGAGGCAGAAGCCATGATATTTATGATAGGCTTTTAAGAAAC 0 0 0 diploid other Unknown 0 TOP AGAGTTGGCGATGACTTGAGAGGCAGAAGCCATGATATTTATGATAGGCTTTTAAGAAAC[A/G]ACACTGGCCCACCACGGTAACATACACCATGCATCTCACAGGTTAAGCAGCAGCAGTACA AGAGTTGGCGATGACTTGAGAGGCAGAAGCCATGATATTTATGATAGGCTTTTAAGAAAC[A/G]ACACTGGCCCACCACGGTAACATACACCATGCATCTCACAGGTTAAGCAGCAGCAGTACA 622
snp10000-scaffold1356-652219 snp10000-scaffold1356-652219-0_B_R_1995042951 BOT [T/C] 69625496 TTAACCCACTGTTGAACATTTACTTTCTGTGGGTGTGTTGGCAAAAGCAG 0 0 0 diploid other Unknown 0 TOP TATCAGATACCATATGATATCTGTTCCTTACACAGGAACTACACTAAGATTCAACCAAGC[A/G]CTGCTTTTGCCAACACACCCACAGAAAGTAAATGTTCAACAGTGGGTTAAAGTTCAGCAG TATCAGATACCATATGATATCTGTTCCTTACACAGGAACTACACTAAGATTCAACCAAGC[A/G]CTGCTTTTGCCAACACACCCACAGAAAGTAAATGTTCAACAGTGGGTTAAAGTTCAGCAG 622
snp10001-scaffold1356-703514 snp10001-scaffold1356-703514-0_B_F_1995042952 BOT [T/C] 19775462 ACAGACAGAAATGAAGTTCAGTGCACTTGCGTAGACAATTCTGCTATTGG 0 0 0 diploid other Unknown 0 BOT AGTCCATGAGACAGACAGAAATGAAGTTCAGTGCACTTGCGTAGACAATTCTGCTATTGG[T/C]GACTCTTGCTCTGAGTCTTGACATTCTGGGAGATAATAATAGCTGCCATTAACTAAGCAG CTGCTTAGTTAATGGCAGCTATTATTATCTCCCAGAATGTCAAGACTCAGAGCAAGAGTC[A/G]CCAATAGCAGAATTGTCTACGCAAGTGCACTGAACTTCATTTCTGTCTGTCTCATGGACT 622
snp10002-scaffold1356-766996 snp10002-scaffold1356-766996-0_B_R_1995042955 BOT [T/G] 38758437 TAAACCAAAAGACAGGAGAGTGTGAAGAAATGTGTGGCTCACTGATTAGC 0 0 0 diploid other Unknown 0 TOP CATTGGCTGTTTTCCCACAGTCTGTGTTTGTATTTGCATCACGGAGACCATCTTAACTGT[A/C]GCTAATCAGTGAGCCACACATTTCTTCACACTCTCCTGTCTTTTGGTTTATCCCCTCACA CATTGGCTGTTTTCCCACAGTCTGTGTTTGTATTTGCATCACGGAGACCATCTTAACTGT[A/C]GCTAATCAGTGAGCCACACATTTCTTCACACTCTCCTGTCTTTTGGTTTATCCCCTCACA 622
snp10003-scaffold1356-808120 snp10003-scaffold1356-808120-0_B_R_1995042957 BOT [T/C] 62775365 TTAAGAAATCTGTTTCAGAACAGTCTTGAGTGGAGGACACCCATGATATG 0 0 0 diploid other Unknown 0 TOP TGAAACAAAAATGGGATCATACTGTCTTTACAGACTTTTAACTTACTTTTTCATTTAGCA[A/G]CATATCATGGGTGTCCTCCACTCAAGACTGTTCTGAAACAGATTTCTTAATGGTGGCAGT TGAAACAAAAATGGGATCATACTGTCTTTACAGACTTTTAACTTACTTTTTCATTTAGCA[A/G]CATATCATGGGTGTCCTCCACTCAAGACTGTTCTGAAACAGATTTCTTAATGGTGGCAGT 622
snp10004-scaffold1356-853276 snp10004-scaffold1356-853276-0_B_F_1995042958 BOT [T/C] 25716504 AAGAAAAAGCACAGTTTCTGTTCCAGGGCCTTGGAAACTAATGTAGGAGA 0 0 0 diploid other Unknown 0 BOT TGTGTTTAGAAAGAAAAAGCACAGTTTCTGTTCCAGGGCCTTGGAAACTAATGTAGGAGA[T/C]GGTCAAGCAAACATAGTCAAATTATATTCATTCACTCTTTCAACAAATATTTATCAAATG CATTTGATAAATATTTGTTGAAAGAGTGAATGAATATAATTTGACTATGTTTGCTTGACC[A/G]TCTCCTACATTAGTTTCCAAGGCCCTGGAACAGAAACTGTGCTTTTTCTTTCTAAACACA 622
snp10005-scaffold1356-907019 snp10005-scaffold1356-907019-0_B_F_1995042960 BOT [T/C] 74672313 TCTAGTCATGTACCAGGCTTTCTACAAATATTTATGAAGGCCAAAATACA 0 0 0 diploid other Unknown 0 BOT AGATTGTCCATCTAGTCATGTACCAGGCTTTCTACAAATATTTATGAAGGCCAAAATACA[T/C]ACCAGGCCTAGTGCGTACAATGGTGCACAATGAGGCCCTCTTCTGCAGTCCATGTTCTAG CTAGAACATGGACTGCAGAAGAGGGCCTCATTGTGCACCATTGTACGCACTAGGCCTGGT[A/G]TGTATTTTGGCCTTCATAAATATTTGTAGAAAGCCTGGTACATGACTAGATGGACAATCT 622
snp10006-scaffold1356-950783 snp10006-scaffold1356-950783-0_B_F_1995042962 BOT [T/C] 25799330 AGTATCACCGCATCACTCCAAGATTTCTGTCATCAGTAGAGTCTCTTCCA 0 0 0 diploid other Unknown 0 BOT CTAGGTAACAAGTATCACCGCATCACTCCAAGATTTCTGTCATCAGTAGAGTCTCTTCCA[T/C]GCTTTTGCTGTCTTAGAATTGTTTAAAACAGTACTTTGTCTGCATTTAGCTACTCATTCT AGAATGAGTAGCTAAATGCAGACAAAGTACTGTTTTAAACAATTCTAAGACAGCAAAAGC[A/G]TGGAAGAGACTCTACTGATGACAGAAATCTTGGAGTGATGCGGTGATACTTGTTACCTAG 622
snp10007-scaffold1356-979415 snp10007-scaffold1356-979415-0_T_F_1995042964 TOP [A/G] 49613428 TCGCCATGAAACCTATTAAAAGACAGGGCACTATCCACATCAATGGAAAG 0 0 0 diploid other Unknown 0 TOP AAATTATACTTCGCCATGAAACCTATTAAAAGACAGGGCACTATCCACATCAATGGAAAG[A/G]ATCAGATTTCCCATCTCAAGTCAAAGGAAAAGATCTGAGAGTGGTTATGTTTCATGTCTA AAATTATACTTCGCCATGAAACCTATTAAAAGACAGGGCACTATCCACATCAATGGAAAG[A/G]ATCAGATTTCCCATCTCAAGTCAAAGGAAAAGATCTGAGAGTGGTTATGTTTCATGTCTA 622
snp10008-scaffold1356-1016746 snp10008-scaffold1356-1016746-0_T_F_1995042966 TOP [A/C] 36608395 TCACTCGAGTGGCTTGGTCCGATTCCAAAGCCCTCACTCTTTTTATACCA 0 0 0 diploid other Unknown 0 TOP ATGCCCAAAGTCACTCGAGTGGCTTGGTCCGATTCCAAAGCCCTCACTCTTTTTATACCA[A/C]GCAACATCTCAAGTGTGTGCCTGTGTGCTCAGTTGCGCAGTCGTGTTTAACTCTTTACAA ATGCCCAAAGTCACTCGAGTGGCTTGGTCCGATTCCAAAGCCCTCACTCTTTTTATACCA[A/C]GCAACATCTCAAGTGTGTGCCTGTGTGCTCAGTTGCGCAGTCGTGTTTAACTCTTTACAA 622
snp10009-scaffold1356-1066886 snp10009-scaffold1356-1066886-0_T_R_1995042969 TOP [A/C] 65796417 TTAAGGAGCATTGGCTTCCTACTTCATGGAATGCTGTGTCCCTCACACAT 0 0 0 diploid other Unknown 0 BOT AAGAGAGACACACAGACAAGAGACACAGAGATTTGGGAGGGTCTAGCCTTCCAAACAGAA[T/G]ATGTGTGAGGGACACAGCATTCCATGAAGTAGGAAGCCAATGCTCCTTAATCTTCTAGAG CTCTAGAAGATTAAGGAGCATTGGCTTCCTACTTCATGGAATGCTGTGTCCCTCACACAT[A/C]TTCTGTTTGGAAGGCTAGACCCTCCCAAATCTCTGTGTCTCTTGTCTGTGTGTCTCTCTT 622
snp1001-scaffold1026-572295 snp1001-scaffold1026-572295-0_T_F_1995025416 TOP [A/C] 63760494 AAAAAGGATCTGAGTCTAGGGATTCATATTCCCAGTCTATAGACAAGGAA 0 0 0 diploid other Unknown 0 TOP TCTTTCAATAAAAAAGGATCTGAGTCTAGGGATTCATATTCCCAGTCTATAGACAAGGAA[A/C]CCGAGCTTAGAGAGGTCAAGTAAGATGGCCCAGGTGAAGAGTCAGGATTTAAACCCAGGT TCTTTCAATAAAAAAGGATCTGAGTCTAGGGATTCATATTCCCAGTCTATAGACAAGGAA[A/C]CCGAGCTTAGAGAGGTCAAGTAAGATGGCCCAGGTGAAGAGTCAGGATTTAAACCCAGGT 622
snp10011-scaffold1356-1142279 snp10011-scaffold1356-1142279-0_T_F_1995042972 TOP [A/C] 65668412 GAAAAGACACATGGGAGATAATTTTTCGCCACCCTGTATATTTAAACATG 0 0 0 diploid other Unknown 0 TOP AGCTTCCTGGGAAAAGACACATGGGAGATAATTTTTCGCCACCCTGTATATTTAAACATG[A/C]TTTTTCCTTTATTCTTTCTTCACAATTTGATACGTAGTTGTGCTAGGTATAAAATTCTAG AGCTTCCTGGGAAAAGACACATGGGAGATAATTTTTCGCCACCCTGTATATTTAAACATG[A/C]TTTTTCCTTTATTCTTTCTTCACAATTTGATACGTAGTTGTGCTAGGTATAAAATTCTAG 622
snp10013-scaffold1356-1211722 snp10013-scaffold1356-1211722-0_B_F_1995042976 BOT [T/C] 18758408 TTAGGTAGTTAAGAGCCACACACCAGCCTTAAGCCATCAGCCAGCACCAA 0 0 0 diploid other Unknown 0 BOT TTATGCAGCATTAGGTAGTTAAGAGCCACACACCAGCCTTAAGCCATCAGCCAGCACCAA[T/C]GTGCCAGGCATGTGAGTCAGCCATGTTGGATCCTCCAGCCTTCAGACAGCTGCAGCTCTA TAGAGCTGCAGCTGTCTGAAGGCTGGAGGATCCAACATGGCTGACTCACATGCCTGGCAC[A/G]TTGGTGCTGGCTGATGGCTTAAGGCTGGTGTGTGGCTCTTAACTACCTAATGCTGCATAA 622
snp10014-scaffold1356-1266343 snp10014-scaffold1356-1266343-0_T_F_1995042978 TOP [A/G] 72635330 TGTTAGTGCAGACCCTGTCTCTAACAGTCCTCAGATACCTAGGTATTCCC 0 0 0 diploid other Unknown 0 TOP ACACTTCAGGTGTTAGTGCAGACCCTGTCTCTAACAGTCCTCAGATACCTAGGTATTCCC[A/G]TTTCCCCAGTGCAGTGACCCCTCTGAAGGAAGGATGGAGGTACTACATGTCATAGTATTA ACACTTCAGGTGTTAGTGCAGACCCTGTCTCTAACAGTCCTCAGATACCTAGGTATTCCC[A/G]TTTCCCCAGTGCAGTGACCCCTCTGAAGGAAGGATGGAGGTACTACATGTCATAGTATTA 622
snp10015-scaffold1356-1299452 snp10015-scaffold1356-1299452-0_T_R_1995042981 TOP [A/G] 64725334 GTCCCAGGTACAGAGATGTAAAAAATGCCTCTCACTGGCCTCCATCTTCC 0 0 0 diploid other Unknown 0 BOT TGTGCGCCTGGTGTTCCTGTAAACTCCAGCCACGGGCTCCTGCGGAGAGGAGGGCGGCGG[T/C]GGAAGATGGAGGCCAGTGAGAGGCATTTTTTACATCTCTGTACCTGGGACTCCTTGGTCA TGACCAAGGAGTCCCAGGTACAGAGATGTAAAAAATGCCTCTCACTGGCCTCCATCTTCC[A/G]CCGCCGCCCTCCTCTCCGCAGGAGCCCGTGGCTGGAGTTTACAGGAACACCAGGCGCACA 622
snp10016-scaffold1356-1372105 snp10016-scaffold1356-1372105-0_B_R_1995042983 BOT [T/C] 70753305 ACAGATTGTATATTGCCCAAATGAAGGCTGGGGGTGTCAACTGCATAGAA 0 0 0 diploid other Unknown 0 TOP TGTCATACCTGACTGTGCAAATCGGGCACTGCCCTACTTCAGGAATGGCTATCCCATTGT[A/G]TTCTATGCAGTTGACACCCCCAGCCTTCATTTGGGCAATATACAATCTGTGCAACCATAG TGTCATACCTGACTGTGCAAATCGGGCACTGCCCTACTTCAGGAATGGCTATCCCATTGT[A/G]TTCTATGCAGTTGACACCCCCAGCCTTCATTTGGGCAATATACAATCTGTGCAACCATAG 622

Total number of rows: 53347

Table truncated, full table size 22699 Kbytes.




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