|
| Status |
Public on Feb 19, 2020 |
| Title |
201148310023_R02C01 |
| Sample type |
genomic |
| |
|
| Source name |
Milk Somatic Cells
|
| Organism |
Capra hircus |
| Characteristics |
Sex: Female
tissue: Milk Somatic Cells
sample_id: 17
alternate_id: 1-Jun-16
|
| Treatment protocol |
Goat milk obtained from different sources and different locations throughout the United States were preserved by Bronopol tablet placement in the milk before shipment and downstream procedures.
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Norgen Biotek Corp. Milk DNA Preservation and Isolation Kit was used to extract genomic DNA from Bronopol preserved goat milk somatic cells.
|
| Label |
Cy3, Cy5
|
| Label protocol |
Third party preparation conducted at the Oklahoma Medical Research Foundation Core Genomics Laboratory.
|
| |
|
| Hybridization protocol |
Third party preparation conducted at the Oklahoma Medical Research Foundation Core Genomics Laboratory.
|
| Scan protocol |
Third party preparation conducted at the Oklahoma Medical Research Foundation Core Genomics Laboratory.
|
| Description |
Genomic DNA extracted from Bronopol preserved goat milk somatic cells was genotyped using InfiniumGoatIGGC_conf_60K Genotyping Beadchips (Illumina).
|
| Data processing |
Genomic DNA extracted from Bronopol preserved goat milk somatic cells was genotyped using InfiniumGoatIGGC_conf_60K Genotyping BeadChips (Illumina).
Image data was analyzed using Genome Studio and further analysis was conducted using PLINK, R, Qlik, and GoldenHelix SNP &Variation Suite
|
| |
|
| Submission date |
Feb 18, 2020 |
| Last update date |
Feb 19, 2020 |
| Contact name |
Yonathan Tilahun |
| E-mail(s) |
yonathan.tilahun@langston.edu
|
| Phone |
4054666105
|
| Organization name |
Langston University
|
| Department |
Extension
|
| Lab |
Teaching Laboratory
|
| Street address |
100 Success Dr.
|
| City |
Langston |
| State/province |
OK |
| ZIP/Postal code |
73050 |
| Country |
USA |
| |
|
| Platform ID |
GPL28152 |
| Series (1) |
| GSE145419 |
Genome-Wide Association Study Towards Genomic Predictive Power for High Production and Quality of Milk in American Alpine Goats |
|
