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Platform GPL28441 Query DataSets for GPL28441
Status Public on Apr 22, 2020
Title [RabGene-1_0-st] Rabbit Gene 1.0 ST Array [transcript (gene) version]
Technology type in situ oligonucleotide
Distribution commercial
Organism Oryctolagus cuniculus
Manufacturer Applied Biosystems
Manufacture protocol See manufacturer's web site
 
Description April 12, 2020: annotation table updated with netaffx build 36
 
Web link https://www.thermofisher.com/order/catalog/product/902238#/902238
Submission date Apr 22, 2020
Last update date Apr 22, 2020
Organization Affymetrix, Inc.
E-mail(s) geo@ncbi.nlm.nih.gov, support@affymetrix.com
Phone 888-362-2447
URL http://www.affymetrix.com/index.affx
Street address
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Samples (8) GSM4490486, GSM4490487, GSM5217341, GSM5217342, GSM5217343, GSM5217344 
Series (2)
GSE149102 The analysis of gene expression profile in rabbit retinal vein occlusion model.
GSE171043 The transcriptome of rabbit conjunctiva in dry eye disease: Large-scale changes and similarity to the human dry eye

Data table header descriptions
ID transcript_cluster_id
seqname
strand
start
stop
total_probes
gene_assignment
mrna_assignment
swissprot
unigene
GO_biological_process
GO_cellular_component
GO_molecular_function
protein_domains
crosshyb_type
category
SPOT_ID

Data table
ID seqname strand start stop total_probes gene_assignment mrna_assignment swissprot unigene GO_biological_process GO_cellular_component GO_molecular_function protein_domains crosshyb_type category SPOT_ID
19724254 chr1 + 20484 29378 25 XM_002708152 // WDR31 // WD repeat domain 31 // --- // 100345553 /// XM_008261098 // WDR31 // WD repeat domain 31 // --- // 100345553 /// XM_008262036 // WDR31 // WD repeat domain 31 // --- // 100345553 /// XM_008262499 // WDR31 // WD repeat domain 31 // --- // 100345553 /// ENSOCUT00000014253 // WDR31 // WD repeat domain 31 // --- // 100345553 "XM_002708152 // RefSeq // PREDICTED: Oryctolagus cuniculus WD repeat domain 31 (WDR31), transcript variant X2, mRNA. // chr1 // 100 // 100 // 25 // 25 // 0 /// XM_008261098 // RefSeq // PREDICTED: Oryctolagus cuniculus WD repeat domain 31 (WDR31), transcript variant X1, mRNA. // chr1 // 100 // 100 // 25 // 25 // 0 /// XM_008262036 // RefSeq // PREDICTED: Oryctolagus cuniculus WD repeat domain 31 (WDR31), transcript variant X3, mRNA. // chr1 // 100 // 100 // 25 // 25 // 0 /// XM_008262499 // RefSeq // PREDICTED: Oryctolagus cuniculus WD repeat domain 31 (WDR31), transcript variant X4, mRNA. // chr1 // 100 // 76 // 19 // 19 // 0 /// ENSOCUT00000014253 // ENSEMBL // ensembl:known_by_projection chromosome:OryCun2.0:1:11369:33974:1 gene:ENSOCUG00000014251 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 100 // 25 // 25 // 0 /// GENSCAN00000006931 // ENSEMBL // cdna:genscan chromosome:OryCun2.0:1:7796:29378:1 transcript_biotype:protein_coding // chr1 // 100 // 72 // 18 // 18 // 0" XM_008262036 // G1T710 /// ENSOCUT00000014253 // G1T710 --- --- --- ENSOCUT00000014253 // GO:0005515 // protein binding // inferred from electronic annotation ENSOCUT00000014253 // Pfam // IPR001680 // WD40 repeat /// ENSOCUT00000014253 // Pfam // IPR001680 // WD40 repeat /// ENSOCUT00000014253 // Pfam // IPR001680 // WD40 repeat /// ENSOCUT00000014253 // Pfam // IPR001680 // WD40 repeat /// ENSOCUT00000014253 // Pfam // IPR001680 // WD40 repeat 1 main transcript_cluster_id: 19724254
19724264 chr1 + 52453 53037 22 XM_008263244 // RNF183 // ring finger protein 183 // --- // 100352371 /// XM_008263668 // RNF183 // ring finger protein 183 // --- // 100352371 /// XM_008264161 // RNF183 // ring finger protein 183 // --- // 100352371 /// XM_008264727 // RNF183 // ring finger protein 183 // --- // 100352371 /// XM_008265281 // RNF183 // ring finger protein 183 // --- // 100352371 /// ENSOCUT00000005053 // RNF183 // ring finger protein 183 // --- // 100352371 "XM_008263244 // RefSeq // PREDICTED: Oryctolagus cuniculus ring finger protein 183 (RNF183), transcript variant X1, mRNA. // chr1 // 100 // 100 // 22 // 22 // 0 /// XM_008263668 // RefSeq // PREDICTED: Oryctolagus cuniculus ring finger protein 183 (RNF183), transcript variant X2, mRNA. // chr1 // 100 // 100 // 22 // 22 // 0 /// XM_008264161 // RefSeq // PREDICTED: Oryctolagus cuniculus ring finger protein 183 (RNF183), transcript variant X3, mRNA. // chr1 // 100 // 100 // 22 // 22 // 0 /// XM_008264727 // RefSeq // PREDICTED: Oryctolagus cuniculus ring finger protein 183 (RNF183), transcript variant X4, mRNA. // chr1 // 100 // 100 // 22 // 22 // 0 /// XM_008265281 // RefSeq // PREDICTED: Oryctolagus cuniculus ring finger protein 183 (RNF183), transcript variant X5, mRNA. // chr1 // 100 // 100 // 22 // 22 // 0 /// ENSOCUT00000005053 // ENSEMBL // ensembl:known_by_projection chromosome:OryCun2.0:1:52453:53037:1 gene:ENSOCUG00000005054 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 100 // 22 // 22 // 0 /// GENSCAN00000006928 // ENSEMBL // cdna:genscan chromosome:OryCun2.0:1:48282:53037:1 transcript_biotype:protein_coding // chr1 // 100 // 100 // 22 // 22 // 0" XM_008263668 // G1SN41 /// XM_008264161 // G1SN41 /// XM_008264727 // G1SN41 /// XM_008265281 // G1SN41 /// ENSOCUT00000005053 // G1SN41 --- --- XM_008263668 // GO:0016020 // membrane // inferred from electronic annotation /// XM_008263668 // GO:0016021 // integral component of membrane // inferred from electronic annotation /// XM_008264161 // GO:0016020 // membrane // inferred from electronic annotation /// XM_008264161 // GO:0016021 // integral component of membrane // inferred from electronic annotation /// XM_008264727 // GO:0016020 // membrane // inferred from electronic annotation /// XM_008264727 // GO:0016021 // integral component of membrane // inferred from electronic annotation /// XM_008265281 // GO:0016020 // membrane // inferred from electronic annotation /// XM_008265281 // GO:0016021 // integral component of membrane // inferred from electronic annotation /// ENSOCUT00000005053 // GO:0016020 // membrane // inferred from electronic annotation /// ENSOCUT00000005053 // GO:0016021 // integral component of membrane // inferred from electronic annotation XM_008263668 // GO:0008270 // zinc ion binding // inferred from electronic annotation /// XM_008263668 // GO:0046872 // metal ion binding // inferred from electronic annotation /// XM_008264161 // GO:0008270 // zinc ion binding // inferred from electronic annotation /// XM_008264161 // GO:0046872 // metal ion binding // inferred from electronic annotation /// XM_008264727 // GO:0008270 // zinc ion binding // inferred from electronic annotation /// XM_008264727 // GO:0046872 // metal ion binding // inferred from electronic annotation /// XM_008265281 // GO:0008270 // zinc ion binding // inferred from electronic annotation /// XM_008265281 // GO:0046872 // metal ion binding // inferred from electronic annotation /// ENSOCUT00000005053 // GO:0005515 // protein binding // inferred from electronic annotation /// ENSOCUT00000005053 // GO:0046872 // metal ion binding // inferred from electronic annotation /// ENSOCUT00000005053 // GO:0008270 // zinc ion binding // inferred from electronic annotation --- 1 main transcript_cluster_id: 19724264
19724266 chr1 + 75200 85751 21 XM_002708139 // CDC26 // cell division cycle 26 // --- // 100358835 /// XM_008267199 // CDC26 // cell division cycle 26 // --- // 100358835 /// ENSOCUT00000005041 // CDC26 // cell division cycle 26 // --- // 100358835 "XM_002708139 // RefSeq // PREDICTED: Oryctolagus cuniculus cell division cycle 26 (CDC26), transcript variant X1, mRNA. // chr1 // 100 // 100 // 21 // 21 // 0 /// XM_008267199 // RefSeq // PREDICTED: Oryctolagus cuniculus cell division cycle 26 (CDC26), transcript variant X2, mRNA. // chr1 // 100 // 100 // 21 // 21 // 0 /// ENSOCUT00000005041 // ENSEMBL // ensembl:known_by_projection chromosome:OryCun2.0:1:75200:85748:1 gene:ENSOCUG00000005044 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 100 // 21 // 21 // 0 /// GENSCAN00000006944 // ENSEMBL // cdna:genscan chromosome:OryCun2.0:1:77758:85501:1 transcript_biotype:protein_coding // chr1 // 100 // 33 // 7 // 7 // 0" XM_002708139 // G1SN34 /// XM_008267199 // G1SN34 /// ENSOCUT00000005041 // G1SN34 XM_002708139 // Ocu.3654 // eye /// XM_008267199 // Ocu.3654 // eye /// ENSOCUT00000005041 // Ocu.3654 // eye XM_002708139 // GO:0030071 // regulation of mitotic metaphase/anaphase transition // inferred from electronic annotation /// XM_002708139 // GO:0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// XM_002708139 // GO:0070979 // protein K11-linked ubiquitination // inferred from electronic annotation /// XM_008267199 // GO:0030071 // regulation of mitotic metaphase/anaphase transition // inferred from electronic annotation /// XM_008267199 // GO:0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// XM_008267199 // GO:0070979 // protein K11-linked ubiquitination // inferred from electronic annotation /// ENSOCUT00000005041 // GO:0030071 // regulation of mitotic metaphase/anaphase transition // inferred from electronic annotation /// ENSOCUT00000005041 // GO:0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// ENSOCUT00000005041 // GO:0070979 // protein K11-linked ubiquitination // inferred from electronic annotation XM_002708139 // GO:0005680 // anaphase-promoting complex // inferred from electronic annotation /// XM_008267199 // GO:0005680 // anaphase-promoting complex // inferred from electronic annotation /// ENSOCUT00000005041 // GO:0005680 // anaphase-promoting complex // inferred from electronic annotation ENSOCUT00000005041 // GO:0005515 // protein binding // inferred from electronic annotation "ENSOCUT00000005041 // Pfam // IPR018860 // Anaphase-promoting complex, subunit CDC26" 1 main transcript_cluster_id: 19724266
19724272 chr1 + 126038 175183 23 "XM_008255342 // FKBP15 // FK506 binding protein 15, 133kDa // --- // 100349460" "XM_008255342 // RefSeq // PREDICTED: Oryctolagus cuniculus FK506 binding protein 15, 133kDa (FKBP15), mRNA. // chr1 // 100 // 100 // 23 // 23 // 0 /// ENSOCUT00000005032 // ENSEMBL // ensembl:known_by_projection chromosome:OryCun2.0:1:126038:162795:1 gene:ENSOCUG00000005028 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 65 // 15 // 15 // 0 /// GENSCAN00000006936 // ENSEMBL // cdna:genscan chromosome:OryCun2.0:1:126038:175183:1 transcript_biotype:protein_coding // chr1 // 100 // 87 // 20 // 20 // 0" ENSOCUT00000005032 // G1SN26 --- ENSOCUT00000005032 // GO:0000413 // protein peptidyl-prolyl isomerization // inferred from electronic annotation /// ENSOCUT00000005032 // GO:0006457 // protein folding // inferred from electronic annotation /// ENSOCUT00000005032 // GO:0010923 // negative regulation of phosphatase activity // inferred from electronic annotation /// ENSOCUT00000005032 // GO:0008152 // metabolic process // inferred from electronic annotation ENSOCUT00000005032 // GO:0016020 // membrane // inferred from electronic annotation /// ENSOCUT00000005032 // GO:0005884 // actin filament // inferred from electronic annotation /// ENSOCUT00000005032 // GO:0030424 // axon // inferred from electronic annotation /// ENSOCUT00000005032 // GO:0030426 // growth cone // inferred from electronic annotation ENSOCUT00000005032 // GO:0005515 // protein binding // inferred from electronic annotation /// ENSOCUT00000005032 // GO:0003755 // peptidyl-prolyl cis-trans isomerase activity // inferred from electronic annotation /// ENSOCUT00000005032 // GO:0016853 // isomerase activity // inferred from electronic annotation ENSOCUT00000005032 // Pfam // IPR001179 // FKBP-type peptidyl-prolyl cis-trans isomerase domain 1 main transcript_cluster_id: 19724272
19724300 chr1 + 330620 343258 13 XM_008269348 // ZFP37 // ZFP37 zinc finger protein // --- // 100345294 /// XM_008269772 // ZFP37 // ZFP37 zinc finger protein // --- // 100345294 /// XM_008270278 // ZFP37 // ZFP37 zinc finger protein // --- // 100345294 /// XM_008270801 // ZFP37 // ZFP37 zinc finger protein // --- // 100345294 /// XM_008271305 // ZFP37 // ZFP37 zinc finger protein // --- // 100345294 /// XM_008271830 // ZFP37 // ZFP37 zinc finger protein // --- // 100345294 /// XM_008272309 // ZFP37 // ZFP37 zinc finger protein // --- // 100345294 "XM_008269348 // RefSeq // PREDICTED: Oryctolagus cuniculus ZFP37 zinc finger protein (ZFP37), transcript variant X1, mRNA. // chr1 // 100 // 100 // 13 // 13 // 0 /// XM_008269772 // RefSeq // PREDICTED: Oryctolagus cuniculus ZFP37 zinc finger protein (ZFP37), transcript variant X2, mRNA. // chr1 // 100 // 62 // 8 // 8 // 0 /// XM_008270278 // RefSeq // PREDICTED: Oryctolagus cuniculus ZFP37 zinc finger protein (ZFP37), transcript variant X3, mRNA. // chr1 // 100 // 62 // 8 // 8 // 0 /// XM_008270801 // RefSeq // PREDICTED: Oryctolagus cuniculus ZFP37 zinc finger protein (ZFP37), transcript variant X4, mRNA. // chr1 // 100 // 62 // 8 // 8 // 0 /// XM_008271305 // RefSeq // PREDICTED: Oryctolagus cuniculus ZFP37 zinc finger protein (ZFP37), transcript variant X5, mRNA. // chr1 // 100 // 62 // 8 // 8 // 0 /// XM_008271830 // RefSeq // PREDICTED: Oryctolagus cuniculus ZFP37 zinc finger protein (ZFP37), transcript variant X6, mRNA. // chr1 // 100 // 62 // 8 // 8 // 0 /// XM_008272309 // RefSeq // PREDICTED: Oryctolagus cuniculus ZFP37 zinc finger protein (ZFP37), transcript variant X7, mRNA. // chr1 // 100 // 62 // 8 // 8 // 0 /// ENSOCUT00000034129 // ENSEMBL // ensembl:known_by_projection chromosome:OryCun2.0:1:341708:343258:1 gene:ENSOCUG00000029203 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 31 // 4 // 4 // 0 /// GENSCAN00000006946 // ENSEMBL // cdna:genscan chromosome:OryCun2.0:1:330557:355419:1 transcript_biotype:protein_coding // chr1 // 100 // 69 // 9 // 9 // 0" ENSOCUT00000034129 // U3KPL8 --- --- --- ENSOCUT00000034129 // GO:0003676 // nucleic acid binding // inferred from electronic annotation /// ENSOCUT00000034129 // GO:0046872 // metal ion binding // inferred from electronic annotation "ENSOCUT00000034129 // Pfam // IPR007087 // Zinc finger, C2H2 /// ENSOCUT00000034129 // Pfam // IPR007087 // Zinc finger, C2H2 /// ENSOCUT00000034129 // Pfam // IPR007087 // Zinc finger, C2H2 /// ENSOCUT00000034129 // Pfam // IPR007087 // Zinc finger, C2H2 /// ENSOCUT00000034129 // Pfam // IPR007087 // Zinc finger, C2H2 /// ENSOCUT00000034129 // Pfam // IPR007087 // Zinc finger, C2H2 /// ENSOCUT00000034129 // Pfam // IPR007087 // Zinc finger, C2H2 /// ENSOCUT00000034129 // Pfam // IPR007087 // Zinc finger, C2H2" 1 main transcript_cluster_id: 19724300
19724305 chr1 + 367395 372458 27 --- "ENSOCUT00000025645 // ENSEMBL // ensembl:known_by_projection chromosome:OryCun2.0:1:367324:372684:1 gene:ENSOCUG00000026544 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 100 // 27 // 27 // 0 /// GENSCAN00000006942 // ENSEMBL // cdna:genscan chromosome:OryCun2.0:1:367457:468021:1 transcript_biotype:protein_coding // chr1 // 100 // 41 // 11 // 11 // 0 /// FR874845 // GenBank // Oryctolagus cuniculus partial mRNA for lipocalin allergen Ory c 4 precursor (lcn gene). // chr1 // 100 // 85 // 23 // 23 // 0 /// NM_001171048 // RefSeq // Oryctolagus cuniculus cytochrome P450 2A11 (CYP2A11), mRNA. // chr1 // 48 // 48 // 13 // 27 // 1 /// L10237 // GenBank // Oryctolagus cuniculus cytochrome P-450 IIA11 (cyp2A11) mRNA, complete cds. // chr1 // 48 // 48 // 13 // 27 // 1" ENSOCUT00000025645 // G1U400 /// FR874845 // U6C8D6 --- ENSOCUT00000025645 // GO:0006810 // transport // inferred from electronic annotation /// FR874845 // GO:0006810 // transport // inferred from electronic annotation ENSOCUT00000025645 // GO:0005576 // extracellular region // inferred from electronic annotation /// FR874845 // GO:0005576 // extracellular region // inferred from electronic annotation ENSOCUT00000025645 // GO:0005215 // transporter activity // inferred from electronic annotation /// ENSOCUT00000025645 // GO:0005550 // pheromone binding // inferred from electronic annotation /// ENSOCUT00000025645 // GO:0036094 // small molecule binding // inferred from electronic annotation /// FR874845 // GO:0005215 // transporter activity // inferred from electronic annotation /// FR874845 // GO:0005550 // pheromone binding // inferred from electronic annotation /// FR874845 // GO:0036094 // small molecule binding // inferred from electronic annotation ENSOCUT00000025645 // Pfam // IPR000566 // Lipocalin/cytosolic fatty-acid binding domain 1 main transcript_cluster_id: 19724305
19724314 chr1 + 456516 465848 20 "XM_002707955 // SLC46A2 // solute carrier family 46, member 2 // --- // 100357705 /// ENSOCUT00000009837 // SLC46A2 // solute carrier family 46, member 2 // --- // 100357705" "XM_002707955 // RefSeq // PREDICTED: Oryctolagus cuniculus solute carrier family 46, member 2 (SLC46A2), mRNA. // chr1 // 100 // 100 // 20 // 20 // 0 /// ENSOCUT00000009837 // ENSEMBL // ensembl:known_by_projection chromosome:OryCun2.0:1:456317:467089:1 gene:ENSOCUG00000009840 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 100 // 20 // 20 // 0 /// GENSCAN00000006942 // ENSEMBL // cdna:genscan chromosome:OryCun2.0:1:367457:468021:1 transcript_biotype:protein_coding // chr1 // 100 // 85 // 17 // 17 // 0" XM_002707955 // G1SY07 /// ENSOCUT00000009837 // G1SY07 --- XM_002707955 // GO:0043029 // T cell homeostasis // inferred from electronic annotation /// XM_002707955 // GO:0045580 // regulation of T cell differentiation // inferred from electronic annotation /// XM_002707955 // GO:0048538 // thymus development // inferred from electronic annotation /// XM_002707955 // GO:0055085 // transmembrane transport // inferred from electronic annotation /// XM_002707955 // GO:0070233 // negative regulation of T cell apoptotic process // inferred from electronic annotation /// ENSOCUT00000009837 // GO:0043029 // T cell homeostasis // inferred from electronic annotation /// ENSOCUT00000009837 // GO:0045580 // regulation of T cell differentiation // inferred from electronic annotation /// ENSOCUT00000009837 // GO:0048538 // thymus development // inferred from electronic annotation /// ENSOCUT00000009837 // GO:0055085 // transmembrane transport // inferred from electronic annotation /// ENSOCUT00000009837 // GO:0070233 // negative regulation of T cell apoptotic process // inferred from electronic annotation XM_002707955 // GO:0009986 // cell surface // inferred from electronic annotation /// XM_002707955 // GO:0016020 // membrane // inferred from electronic annotation /// XM_002707955 // GO:0016021 // integral component of membrane // inferred from electronic annotation /// ENSOCUT00000009837 // GO:0016021 // integral component of membrane // inferred from electronic annotation /// ENSOCUT00000009837 // GO:0009986 // cell surface // inferred from electronic annotation /// ENSOCUT00000009837 // GO:0016020 // membrane // inferred from electronic annotation --- ENSOCUT00000009837 // Pfam // IPR011701 // Major facilitator superfamily 1 main transcript_cluster_id: 19724314
19724319 chr1 + 633855 650614 22 XM_002707972 // INIP // INTS3 and NABP interacting protein // --- // 100344197 /// ENSOCUT00000016719 // INIP // INTS3 and NABP interacting protein // --- // 100344197 "XM_002707972 // RefSeq // PREDICTED: Oryctolagus cuniculus INTS3 and NABP interacting protein (INIP), mRNA. // chr1 // 100 // 100 // 22 // 22 // 0 /// ENSOCUT00000016719 // ENSEMBL // ensembl:known_by_projection chromosome:OryCun2.0:1:632068:650617:1 gene:ENSOCUG00000016717 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 100 // 22 // 22 // 0" XM_002707972 // G1TC81 /// ENSOCUT00000016719 // G1TC81 --- XM_002707972 // GO:0006281 // DNA repair // inferred from electronic annotation /// XM_002707972 // GO:0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// XM_002707972 // GO:0010212 // response to ionizing radiation // inferred from electronic annotation /// ENSOCUT00000016719 // GO:0006281 // DNA repair // inferred from electronic annotation /// ENSOCUT00000016719 // GO:0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// ENSOCUT00000016719 // GO:0010212 // response to ionizing radiation // inferred from electronic annotation XM_002707972 // GO:0005634 // nucleus // inferred from electronic annotation /// XM_002707972 // GO:0005654 // nucleoplasm // inferred from electronic annotation /// XM_002707972 // GO:0070876 // SOSS complex // inferred from electronic annotation /// ENSOCUT00000016719 // GO:0005634 // nucleus // inferred from electronic annotation /// ENSOCUT00000016719 // GO:0005654 // nucleoplasm // inferred from electronic annotation /// ENSOCUT00000016719 // GO:0070876 // SOSS complex // inferred from electronic annotation ENSOCUT00000016719 // GO:0005515 // protein binding // inferred from electronic annotation --- 1 main transcript_cluster_id: 19724319
19724323 chr1 + 956327 1088543 32 XM_008251483 // PTBP3 // polypyrimidine tract binding protein 3 // --- // 100350707 /// ENSOCUT00000017670 // PTBP3 // polypyrimidine tract binding protein 3 // --- // 100350707 "XM_008251483 // RefSeq // PREDICTED: Oryctolagus cuniculus polypyrimidine tract binding protein 3 (PTBP3), mRNA. // chr1 // 96 // 81 // 25 // 26 // 0 /// ENSOCUT00000017670 // ENSEMBL // ensembl:known_by_projection chromosome:OryCun2.0:1:987461:1088543:1 gene:ENSOCUG00000017670 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 78 // 25 // 25 // 0 /// GENSCAN00000036954 // ENSEMBL // cdna:genscan chromosome:OryCun2.0:1:1017695:1158845:1 transcript_biotype:protein_coding // chr1 // 100 // 50 // 16 // 16 // 0" ENSOCUT00000017670 // G1TE64 --- "ENSOCUT00000017670 // GO:0006397 // mRNA processing // inferred from electronic annotation /// ENSOCUT00000017670 // GO:0033119 // negative regulation of RNA splicing // inferred from electronic annotation /// ENSOCUT00000017670 // GO:0048025 // negative regulation of mRNA splicing, via spliceosome // inferred from electronic annotation " ENSOCUT00000017670 // GO:0005634 // nucleus // inferred from electronic annotation ENSOCUT00000017670 // GO:0000166 // nucleotide binding // inferred from electronic annotation /// ENSOCUT00000017670 // GO:0003676 // nucleic acid binding // inferred from electronic annotation /// ENSOCUT00000017670 // GO:0003723 // RNA binding // inferred from electronic annotation /// ENSOCUT00000017670 // GO:0044822 // poly(A) RNA binding // inferred from electronic annotation ENSOCUT00000017670 // Pfam // IPR000504 // RNA recognition motif domain /// ENSOCUT00000017670 // Pfam // IPR000504 // RNA recognition motif domain /// ENSOCUT00000017670 // Pfam // IPR000504 // RNA recognition motif domain 1 main transcript_cluster_id: 19724323
19724342 chr1 + 1132375 1273677 32 XM_008252259 // SUSD1 // sushi domain containing 1 // --- // 100350961 /// XM_008252727 // SUSD1 // sushi domain containing 1 // --- // 100350961 /// XM_008253165 // SUSD1 // sushi domain containing 1 // --- // 100350961 /// ENSOCUT00000010438 // SUSD1 // sushi domain containing 1 // --- // 100350961 "XM_008252259 // RefSeq // PREDICTED: Oryctolagus cuniculus sushi domain containing 1 (SUSD1), transcript variant X1, mRNA. // chr1 // 100 // 75 // 24 // 24 // 0 /// XM_008252727 // RefSeq // PREDICTED: Oryctolagus cuniculus sushi domain containing 1 (SUSD1), transcript variant X2, mRNA. // chr1 // 100 // 69 // 22 // 22 // 0 /// XM_008253165 // RefSeq // PREDICTED: Oryctolagus cuniculus sushi domain containing 1 (SUSD1), transcript variant X3, mRNA. // chr1 // 100 // 81 // 26 // 26 // 0 /// ENSOCUT00000010438 // ENSEMBL // ensembl:known_by_projection chromosome:OryCun2.0:1:1131690:1277068:1 gene:ENSOCUG00000010435 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 81 // 26 // 26 // 0 /// GENSCAN00000036954 // ENSEMBL // cdna:genscan chromosome:OryCun2.0:1:1017695:1158845:1 transcript_biotype:protein_coding // chr1 // 100 // 13 // 4 // 4 // 0 /// GENSCAN00000036959 // ENSEMBL // cdna:genscan chromosome:OryCun2.0:1:1194082:1282822:1 transcript_biotype:protein_coding // chr1 // 100 // 47 // 15 // 15 // 0" XM_008253165 // G1SZA2 /// ENSOCUT00000010438 // G1SZA2 --- --- XM_008253165 // GO:0016020 // membrane // inferred from electronic annotation /// XM_008253165 // GO:0016021 // integral component of membrane // inferred from electronic annotation /// ENSOCUT00000010438 // GO:0016020 // membrane // inferred from electronic annotation /// ENSOCUT00000010438 // GO:0016021 // integral component of membrane // inferred from electronic annotation XM_008253165 // GO:0005509 // calcium ion binding // inferred from electronic annotation /// ENSOCUT00000010438 // GO:0005515 // protein binding // inferred from electronic annotation /// ENSOCUT00000010438 // GO:0005509 // calcium ion binding // inferred from electronic annotation ENSOCUT00000010438 // Pfam // IPR000436 // Sushi/SCR/CCP domain /// ENSOCUT00000010438 // Pfam // IPR000436 // Sushi/SCR/CCP domain /// ENSOCUT00000010438 // Pfam // IPR001881 // EGF-like calcium-binding domain /// ENSOCUT00000010438 // Pfam // IPR001881 // EGF-like calcium-binding domain 1 main transcript_cluster_id: 19724342
19724361 chr1 + 1414059 1414180 8 --- ENSOCUT00000018077 // ENSEMBL // ncrna:novel chromosome:OryCun2.0:1:1414059:1414180:1 gene:ENSOCUG00000018077 gene_biotype:rRNA transcript_biotype:rRNA // chr1 // 100 // 100 // 8 // 8 // 0 --- --- --- --- --- --- 1 main transcript_cluster_id: 19724361
19724363 chr1 + 1524133 1616043 22 "XM_008254324 // C1H9orf84 // chromosome 1 open reading frame, human C9orf84 // --- // 100351968 /// ENSOCUT00000016295 // C1H9orf84 // chromosome 1 open reading frame, human C9orf84 // --- // 100351968" "XM_008254324 // RefSeq // PREDICTED: Oryctolagus cuniculus chromosome 1 open reading frame, human C9orf84 (C1H9orf84), mRNA. // chr1 // 100 // 95 // 21 // 21 // 0 /// ENSOCUT00000016295 // ENSEMBL // ensembl:known_by_projection chromosome:OryCun2.0:1:1524133:1617015:1 gene:ENSOCUG00000016284 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 95 // 21 // 21 // 0 /// GENSCAN00000001531 // ENSEMBL // cdna:genscan chromosome:OryCun2.0:1:1530677:1621721:1 transcript_biotype:protein_coding // chr1 // 100 // 45 // 10 // 10 // 0" ENSOCUT00000016295 // G1TBC2 --- --- --- --- --- 1 main transcript_cluster_id: 19724363
19724390 chr1 + 1683371 1683796 25 XM_002708036 // LOC100346767 // nuclear nucleic acid-binding protein C1D // --- // 100346767 "XM_002708036 // RefSeq // PREDICTED: Oryctolagus cuniculus nuclear nucleic acid-binding protein C1D (LOC100346767), mRNA. // chr1 // 100 // 100 // 25 // 25 // 0 /// ENSOCUT00000026517 // ENSEMBL // ensembl:known chromosome:OryCun2.0:1:1683371:1683796:1 gene:ENSOCUG00000025587 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 100 // 25 // 25 // 0 /// GENSCAN00000001529 // ENSEMBL // cdna:genscan chromosome:OryCun2.0:1:1674053:1683796:1 transcript_biotype:protein_coding // chr1 // 100 // 100 // 25 // 25 // 0 /// XM_002709830 // RefSeq // PREDICTED: Oryctolagus cuniculus C1D nuclear receptor corepressor (C1D), transcript variant X2, mRNA. // chr1 // 100 // 100 // 25 // 25 // 1 /// XM_008254321 // RefSeq // PREDICTED: Oryctolagus cuniculus C1D nuclear receptor corepressor (C1D), transcript variant X1, mRNA. // chr1 // 100 // 100 // 25 // 25 // 1 /// ENSOCUT00000009766 // ENSEMBL // ensembl:known chromosome:OryCun2.0:2:118061383:118077647:1 gene:ENSOCUG00000009771 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 100 // 25 // 25 // 1 /// GENSCAN00000033907 // ENSEMBL // cdna:genscan chromosome:OryCun2.0:2:118054055:118077647:1 transcript_biotype:protein_coding // chr1 // 100 // 100 // 25 // 25 // 1 /// ENSOCUT00000023674 // ENSEMBL // ensembl:novel chromosome:OryCun2.0:X:52289619:52290042:1 gene:ENSOCUG00000024276 gene_biotype:pseudogene transcript_biotype:pseudogene // chr1 // 68 // 68 // 17 // 25 // 1 /// GENSCAN00000010573 // ENSEMBL // cdna:genscan chromosome:OryCun2.0:X:52273642:52355757:1 transcript_biotype:protein_coding // chr1 // 64 // 64 // 16 // 25 // 1 /// GENSCAN00000025293 // ENSEMBL // cdna:genscan chromosome:OryCun2.0:20:5469817:5667123:1 transcript_biotype:protein_coding // chr1 // 56 // 56 // 14 // 25 // 1" XM_002708036 // G1TS88 /// ENSOCUT00000026517 // G1TS88 --- --- --- --- ENSOCUT00000026517 // Pfam // IPR007146 // Sas10/Utp3/C1D 3 main transcript_cluster_id: 19724390
19724392 chr1 + 1704767 1724495 10 NM_001082702 // PTGR1 // prostaglandin reductase 1 // --- // 100009440 /// Z34285 // PTGR1 // prostaglandin reductase 1 // --- // 100009440 "NM_001082702 // RefSeq // Oryctolagus cuniculus prostaglandin reductase 1 (PTGR1), mRNA. // chr1 // 90 // 100 // 9 // 10 // 0 /// Z34285 // GenBank // O.cuniculus (AdRab-F) mRNA expressed in adult intestine. // chr1 // 90 // 100 // 9 // 10 // 0 /// ENSOCUT00000030973 // ENSEMBL // ensembl:known chromosome:OryCun2.0:1:1704767:1724892:1 gene:ENSOCUG00000022867 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 100 // 10 // 10 // 0 /// GENSCAN00000001540 // ENSEMBL // cdna:genscan chromosome:OryCun2.0:1:1714417:1753777:1 transcript_biotype:protein_coding // chr1 // 100 // 20 // 2 // 2 // 0" NM_001082702 // Q28719 /// Z34285 // Q28719 /// ENSOCUT00000030973 // G1TNX7 NM_001082702 // Ocu.2102 // --- /// Z34285 // Ocu.2102 // --- NM_001082702 // GO:0006693 // prostaglandin metabolic process // inferred from electronic annotation /// NM_001082702 // GO:0055114 // oxidation-reduction process // inferred from electronic annotation /// Z34285 // GO:0006693 // prostaglandin metabolic process // inferred from electronic annotation /// Z34285 // GO:0055114 // oxidation-reduction process // inferred from electronic annotation /// ENSOCUT00000030973 // GO:0055114 // oxidation-reduction process // inferred from electronic annotation NM_001082702 // GO:0005737 // cytoplasm // inferred from electronic annotation /// Z34285 // GO:0005737 // cytoplasm // inferred from electronic annotation /// ENSOCUT00000030973 // GO:0005737 // cytoplasm // inferred from electronic annotation NM_001082702 // GO:0008270 // zinc ion binding // inferred from electronic annotation /// NM_001082702 // GO:0016491 // oxidoreductase activity // inferred from electronic annotation /// NM_001082702 // GO:0032440 // 2-alkenal reductase [NAD(P)] activity // inferred from electronic annotation /// NM_001082702 // GO:0036132 // 13-prostaglandin reductase activity // inferred from electronic annotation /// NM_001082702 // GO:0047522 // 15-oxoprostaglandin 13-oxidase activity // inferred from electronic annotation /// Z34285 // GO:0008270 // zinc ion binding // inferred from electronic annotation /// Z34285 // GO:0016491 // oxidoreductase activity // inferred from electronic annotation /// Z34285 // GO:0032440 // 2-alkenal reductase [NAD(P)] activity // inferred from electronic annotation /// Z34285 // GO:0036132 // 13-prostaglandin reductase activity // inferred from electronic annotation /// Z34285 // GO:0047522 // 15-oxoprostaglandin 13-oxidase activity // inferred from electronic annotation /// ENSOCUT00000030973 // GO:0016491 // oxidoreductase activity // inferred from electronic annotation /// ENSOCUT00000030973 // GO:0008270 // zinc ion binding // inferred from electronic annotation /// ENSOCUT00000030973 // GO:0032440 // 2-alkenal reductase [NAD(P)] activity // inferred from electronic annotation /// ENSOCUT00000030973 // GO:0047522 // 15-oxoprostaglandin 13-oxidase activity // inferred from electronic annotation "ENSOCUT00000030973 // Pfam // IPR013149 // Alcohol dehydrogenase, C-terminal" 1 main transcript_cluster_id: 19724392
19724404 chr1 + 1728525 1754137 10 XM_008254615 // PTGR1 // prostaglandin reductase 1 // --- // 100352119 /// ENSOCUT00000004878 // PTGR1 // prostaglandin reductase 1 // --- // 100352119 /// ENSOCUT00000004878 // PTGR1 // prostaglandin reductase 1 // --- // 100009440 "XM_008254615 // RefSeq // PREDICTED: Oryctolagus cuniculus prostaglandin reductase 1 (PTGR1), mRNA. // chr1 // 88 // 80 // 7 // 8 // 0 /// ENSOCUT00000004878 // ENSEMBL // ensembl:known chromosome:OryCun2.0:1:1729460:1753835:1 gene:ENSOCUG00000004879 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 50 // 5 // 5 // 0 /// GENSCAN00000001540 // ENSEMBL // cdna:genscan chromosome:OryCun2.0:1:1714417:1753777:1 transcript_biotype:protein_coding // chr1 // 100 // 50 // 5 // 5 // 0" ENSOCUT00000004878 // G1SMQ0 /// ENSOCUT00000004878 // Q28719 ENSOCUT00000004878 // Ocu.2102 // --- ENSOCUT00000004878 // GO:0055114 // oxidation-reduction process // inferred from electronic annotation /// ENSOCUT00000004878 // GO:0006693 // prostaglandin metabolic process // inferred from electronic annotation ENSOCUT00000004878 // GO:0005737 // cytoplasm // inferred from electronic annotation ENSOCUT00000004878 // GO:0016491 // oxidoreductase activity // inferred from electronic annotation /// ENSOCUT00000004878 // GO:0008270 // zinc ion binding // inferred from electronic annotation /// ENSOCUT00000004878 // GO:0032440 // 2-alkenal reductase [NAD(P)] activity // inferred from electronic annotation /// ENSOCUT00000004878 // GO:0047522 // 15-oxoprostaglandin 13-oxidase activity // inferred from electronic annotation /// ENSOCUT00000004878 // GO:0036132 // 13-prostaglandin reductase activity // inferred from electronic annotation "ENSOCUT00000004878 // Pfam // IPR013149 // Alcohol dehydrogenase, C-terminal" 3 main transcript_cluster_id: 19724404
19724415 chr1 + 1805320 1923110 48 XM_008254720 // KIAA0368 // KIAA0368 ortholog // --- // 100352982 /// XM_008254753 // KIAA0368 // KIAA0368 ortholog // --- // 100352982 /// ENSOCUT00000004275 // KIAA0368 // KIAA0368 ortholog // --- // 100352982 /// ENSOCUT00000030287 // KIAA0368 // KIAA0368 ortholog // --- // 100352982 "XM_008254720 // RefSeq // PREDICTED: Oryctolagus cuniculus KIAA0368 ortholog (KIAA0368), transcript variant X1, mRNA. // chr1 // 100 // 90 // 43 // 43 // 0 /// XM_008254753 // RefSeq // PREDICTED: Oryctolagus cuniculus KIAA0368 ortholog (KIAA0368), transcript variant X2, mRNA. // chr1 // 100 // 90 // 43 // 43 // 0 /// ENSOCUT00000004275 // ENSEMBL // ensembl:known_by_projection chromosome:OryCun2.0:1:1817814:1922962:1 gene:ENSOCUG00000004268 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 88 // 42 // 42 // 0 /// ENSOCUT00000030287 // ENSEMBL // ensembl:known_by_projection chromosome:OryCun2.0:1:1831933:1923107:1 gene:ENSOCUG00000004268 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 90 // 43 // 43 // 0 /// GENSCAN00000001541 // ENSEMBL // cdna:genscan chromosome:OryCun2.0:1:1805320:1922962:1 transcript_biotype:protein_coding // chr1 // 95 // 79 // 36 // 38 // 0" ENSOCUT00000004275 // G1SLF8 /// ENSOCUT00000030287 // G1TVW9 XM_008254720 // Ocu.5509 // central nervous system| heart /// XM_008254753 // Ocu.5509 // central nervous system| heart /// ENSOCUT00000004275 // Ocu.5509 // central nervous system| heart /// ENSOCUT00000030287 // Ocu.5509 // central nervous system| heart --- --- ENSOCUT00000004275 // GO:0005488 // binding // inferred from electronic annotation /// ENSOCUT00000030287 // GO:0005488 // binding // inferred from electronic annotation --- 1 main transcript_cluster_id: 19724415
19724471 chr1 + 1946349 1947281 15 XM_008255364 // LOC100353230 // olfactory receptor 2K2 // --- // 100353230 /// ENSOCUT00000004262 // LOC100353230 // olfactory receptor 2K2 // --- // 100353230 "XM_008255364 // RefSeq // PREDICTED: Oryctolagus cuniculus olfactory receptor 2K2 (LOC100353230), mRNA. // chr1 // 100 // 100 // 15 // 15 // 0 /// ENSOCUT00000004262 // ENSEMBL // ensembl:known_by_projection chromosome:OryCun2.0:1:1946349:1947281:1 gene:ENSOCUG00000004267 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 100 // 15 // 15 // 0 /// GENSCAN00000001535 // ENSEMBL // cdna:genscan chromosome:OryCun2.0:1:1946370:1947299:1 transcript_biotype:protein_coding // chr1 // 100 // 93 // 14 // 14 // 0" ENSOCUT00000004262 // G1U2B2 --- ENSOCUT00000004262 // GO:0007165 // signal transduction // inferred from electronic annotation /// ENSOCUT00000004262 // GO:0007186 // G-protein coupled receptor signaling pathway // inferred from electronic annotation /// ENSOCUT00000004262 // GO:0007608 // sensory perception of smell // inferred from electronic annotation /// ENSOCUT00000004262 // GO:0050896 // response to stimulus // inferred from electronic annotation /// ENSOCUT00000004262 // GO:0050911 // detection of chemical stimulus involved in sensory perception of smell // inferred from electronic annotation ENSOCUT00000004262 // GO:0005886 // plasma membrane // inferred from electronic annotation /// ENSOCUT00000004262 // GO:0016021 // integral component of membrane // inferred from electronic annotation /// ENSOCUT00000004262 // GO:0016020 // membrane // inferred from electronic annotation ENSOCUT00000004262 // GO:0004871 // signal transducer activity // inferred from electronic annotation /// ENSOCUT00000004262 // GO:0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// ENSOCUT00000004262 // GO:0004984 // olfactory receptor activity // inferred from electronic annotation "ENSOCUT00000004262 // Pfam // IPR000276 // G protein-coupled receptor, rhodopsin-like" 1 main transcript_cluster_id: 19724471
19724473 chr1 + 2314488 2396390 17 XM_008254821 // LPAR1 // lysophosphatidic acid receptor 1 // --- // 100355169 /// XM_008254885 // LPAR1 // lysophosphatidic acid receptor 1 // --- // 100355169 /// XM_008254938 // LPAR1 // lysophosphatidic acid receptor 1 // --- // 100355169 /// XM_008254984 // LPAR1 // lysophosphatidic acid receptor 1 // --- // 100355169 /// XM_008255042 // LPAR1 // lysophosphatidic acid receptor 1 // --- // 100355169 /// ENSOCUT00000026641 // LPAR1 // lysophosphatidic acid receptor 1 // --- // 100355169 "XM_008254821 // RefSeq // PREDICTED: Oryctolagus cuniculus lysophosphatidic acid receptor 1 (LPAR1), transcript variant X1, mRNA. // chr1 // 100 // 88 // 15 // 15 // 0 /// XM_008254885 // RefSeq // PREDICTED: Oryctolagus cuniculus lysophosphatidic acid receptor 1 (LPAR1), transcript variant X2, mRNA. // chr1 // 100 // 88 // 15 // 15 // 0 /// XM_008254938 // RefSeq // PREDICTED: Oryctolagus cuniculus lysophosphatidic acid receptor 1 (LPAR1), transcript variant X3, mRNA. // chr1 // 100 // 88 // 15 // 15 // 0 /// XM_008254984 // RefSeq // PREDICTED: Oryctolagus cuniculus lysophosphatidic acid receptor 1 (LPAR1), transcript variant X4, mRNA. // chr1 // 100 // 88 // 15 // 15 // 0 /// XM_008255042 // RefSeq // PREDICTED: Oryctolagus cuniculus lysophosphatidic acid receptor 1 (LPAR1), transcript variant X5, mRNA. // chr1 // 100 // 88 // 15 // 15 // 0 /// ENSOCUT00000026641 // ENSEMBL // ensembl:known_by_projection chromosome:OryCun2.0:1:2314378:2400156:1 gene:ENSOCUG00000026842 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 88 // 15 // 15 // 0 /// GENSCAN00000028726 // ENSEMBL // cdna:genscan chromosome:OryCun2.0:1:2336061:2396390:1 transcript_biotype:protein_coding // chr1 // 100 // 88 // 15 // 15 // 0" XM_008254821 // G1U0W0 /// XM_008254885 // G1U0W0 /// XM_008254938 // G1U0W0 /// XM_008254984 // G1U0W0 /// XM_008255042 // G1U0W0 /// ENSOCUT00000026641 // G1U0W0 --- XM_008254821 // GO:0000187 // activation of MAPK activity // inferred from electronic annotation /// XM_008254821 // GO:0007165 // signal transduction // inferred from electronic annotation /// XM_008254821 // GO:0007186 // G-protein coupled receptor signaling pathway // inferred from electronic annotation /// XM_008254821 // GO:0007193 // adenylate cyclase-inhibiting G-protein coupled receptor signaling pathway // inferred from electronic annotation /// XM_008254821 // GO:0007202 // activation of phospholipase C activity // inferred from electronic annotation /// XM_008254821 // GO:0008360 // regulation of cell shape // inferred from electronic annotation /// XM_008254821 // GO:0010977 // negative regulation of neuron projection development // inferred from electronic annotation /// XM_008254821 // GO:0032060 // bleb assembly // inferred from electronic annotation /// XM_008254821 // GO:0035025 // positive regulation of Rho protein signal transduction // inferred from electronic annotation /// XM_008254821 // GO:0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from electronic annotation /// XM_008254821 // GO:0043410 // positive regulation of MAPK cascade // inferred from electronic annotation /// XM_008254821 // GO:0051482 // positive regulation of cytosolic calcium ion concentration involved in phospholipase C-activating G-protein coupled signaling pathway // inferred from electronic annotation /// XM_008254821 // GO:0051496 // positive regulation of stress fiber assembly // inferred from electronic annotation /// XM_008254821 // GO:0060326 // cell chemotaxis // inferred from electronic annotation /// XM_008254885 // GO:0000187 // activation of MAPK activity // inferred from electronic annotation /// XM_008254885 // GO:0007165 // signal transduction // inferred from electronic annotation /// XM_008254885 // GO:0007186 // G-protein coupled receptor signaling pathway // inferred from electronic annotation /// XM_008254885 // GO:0007193 // adenylate cyclase-inhibiting G-protein coupled receptor signaling pathway // inferred from electronic annotation /// XM_008254885 // GO:0007202 // activation of phospholipase C activity // inferred from electronic annotation /// XM_008254885 // GO:0008360 // regulation of cell shape // inferred from electronic annotation /// XM_008254885 // GO:0010977 // negative regulation of neuron projection development // inferred from electronic annotation /// XM_008254885 // GO:0032060 // bleb assembly // inferred from electronic annotation /// XM_008254885 // GO:0035025 // positive regulation of Rho protein signal transduction // inferred from electronic annotation /// XM_008254885 // GO:0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from electronic annotation /// XM_008254885 // GO:0043410 // positive regulation of MAPK cascade // inferred from electronic annotation /// XM_008254885 // GO:0051482 // positive regulation of cytosolic calcium ion concentration involved in phospholipase C-activating G-protein coupled signaling pathway // inferred from electronic annotation /// XM_008254885 // GO:0051496 // positive regulation of stress fiber assembly // inferred from electronic annotation /// XM_008254885 // GO:0060326 // cell chemotaxis // inferred from electronic annotation /// XM_008254938 // GO:0000187 // activation of MAPK activity // inferred from electronic annotation /// XM_008254938 // GO:0007165 // signal transduction // inferred from electronic annotation /// XM_008254938 // GO:0007186 // G-protein coupled receptor signaling pathway // inferred from electronic annotation /// XM_008254938 // GO:0007193 // adenylate cyclase-inhibiting G-protein coupled receptor signaling pathway // inferred from electronic annotation /// XM_008254938 // GO:0007202 // activation of phospholipase C activity // inferred from electronic annotation /// XM_008254938 // GO:0008360 // regulation of cell shape // inferred from electronic annotation /// XM_008254938 // GO:0010977 // negative regulation of neuron projection development // inferred from electronic annotation /// XM_008254938 // GO:0032060 // bleb assembly // inferred from electronic annotation /// XM_008254938 // GO:0035025 // positive regulation of Rho protein signal transduction // inferred from electronic annotation /// XM_008254938 // GO:0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from electronic annotation /// XM_008254938 // GO:0043410 // positive regulation of MAPK cascade // inferred from electronic annotation /// XM_008254938 // GO:0051482 // positive regulation of cytosolic calcium ion concentration involved in phospholipase C-activating G-protein coupled signaling pathway // inferred from electronic annotation /// XM_008254938 // GO:0051496 // positive regulation of stress fiber assembly // inferred from electronic annotation /// XM_008254938 // GO:0060326 // cell chemotaxis // inferred from electronic annotation /// XM_008254984 // GO:0000187 // activation of MAPK activity // inferred from electronic annotation /// XM_008254984 // GO:0007165 // signal transduction // inferred from electronic annotation /// XM_008254984 // GO:0007186 // G-protein coupled receptor signaling pathway // inferred from electronic annotation /// XM_008254984 // GO:0007193 // adenylate cyclase-inhibiting G-protein coupled receptor signaling pathway // inferred from electronic annotation /// XM_008254984 // GO:0007202 // activation of phospholipase C activity // inferred from electronic annotation /// XM_008254984 // GO:0008360 // regulation of cell shape // inferred from electronic annotation /// XM_008254984 // GO:0010977 // negative regulation of neuron projection development // inferred from electronic annotation /// XM_008254984 // GO:0032060 // bleb assembly // inferred from electronic annotation /// XM_008254984 // GO:0035025 // positive regulation of Rho protein signal transduction // inferred from electronic annotation /// XM_008254984 // GO:0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from electronic annotation /// XM_008254984 // GO:0043410 // positive regulation of MAPK cascade // inferred from electronic annotation /// XM_008254984 // GO:0051482 // positive regulation of cytosolic calcium ion concentration involved in phospholipase C-activating G-protein coupled signaling pathway // inferred from electronic annotation /// XM_008254984 // GO:0051496 // positive regulation of stress fiber assembly // inferred from electronic annotation /// XM_008254984 // GO:0060326 // cell chemotaxis // inferred from electronic annotation /// XM_008255042 // GO:0000187 // activation of MAPK activity // inferred from electronic annotation /// XM_008255042 // GO:0007165 // signal transduction // inferred from electronic annotation /// XM_008255042 // GO:0007186 // G-protein coupled receptor signaling pathway // inferred from electronic annotation /// XM_008255042 // GO:0007193 // adenylate cyclase-inhibiting G-protein coupled receptor signaling pathway // inferred from electronic annotation /// XM_008255042 // GO:0007202 // activation of phospholipase C activity // inferred from electronic annotation /// XM_008255042 // GO:0008360 // regulation of cell shape // inferred from electronic annotation /// XM_008255042 // GO:0010977 // negative regulation of neuron projection development // inferred from electronic annotation /// XM_008255042 // GO:0032060 // bleb assembly // inferred from electronic annotation /// XM_008255042 // GO:0035025 // positive regulation of Rho protein signal transduction // inferred from electronic annotation /// XM_008255042 // GO:0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from electronic annotation /// XM_008255042 // GO:0043410 // positive regulation of MAPK cascade // inferred from electronic annotation /// XM_008255042 // GO:0051482 // positive regulation of cytosolic calcium ion concentration involved in phospholipase C-activating G-protein coupled signaling pathway // inferred from electronic annotation /// XM_008255042 // GO:0051496 // positive regulation of stress fiber assembly // inferred from electronic annotation /// XM_008255042 // GO:0060326 // cell chemotaxis // inferred from electronic annotation /// ENSOCUT00000026641 // GO:0000187 // activation of MAPK activity // inferred from electronic annotation /// ENSOCUT00000026641 // GO:0007165 // signal transduction // inferred from electronic annotation /// ENSOCUT00000026641 // GO:0007186 // G-protein coupled receptor signaling pathway // inferred from electronic annotation /// ENSOCUT00000026641 // GO:0007193 // adenylate cyclase-inhibiting G-protein coupled receptor signaling pathway // inferred from electronic annotation /// ENSOCUT00000026641 // GO:0007202 // activation of phospholipase C activity // inferred from electronic annotation /// ENSOCUT00000026641 // GO:0008360 // regulation of cell shape // inferred from electronic annotation /// ENSOCUT00000026641 // GO:0010977 // negative regulation of neuron projection development // inferred from electronic annotation /// ENSOCUT00000026641 // GO:0032060 // bleb assembly // inferred from electronic annotation /// ENSOCUT00000026641 // GO:0035025 // positive regulation of Rho protein signal transduction // inferred from electronic annotation /// ENSOCUT00000026641 // GO:0043123 // positive regulation of I-kappaB kinase/NF-kappaB signaling // inferred from electronic annotation /// ENSOCUT00000026641 // GO:0043410 // positive regulation of MAPK cascade // inferred from electronic annotation /// ENSOCUT00000026641 // GO:0051482 // positive regulation of cytosolic calcium ion concentration involved in phospholipase C-activating G-protein coupled signaling pathway // inferred from electronic annotation /// ENSOCUT00000026641 // GO:0051496 // positive regulation of stress fiber assembly // inferred from electronic annotation /// ENSOCUT00000026641 // GO:0060326 // cell chemotaxis // inferred from electronic annotation XM_008254821 // GO:0005768 // endosome // inferred from electronic annotation /// XM_008254821 // GO:0005829 // cytosol // inferred from electronic annotation /// XM_008254821 // GO:0005886 // plasma membrane // inferred from electronic annotation /// XM_008254821 // GO:0005887 // integral component of plasma membrane // inferred from electronic annotation /// XM_008254821 // GO:0009986 // cell surface // inferred from electronic annotation /// XM_008254821 // GO:0016020 // membrane // inferred from electronic annotation /// XM_008254821 // GO:0016021 // integral component of membrane // inferred from electronic annotation /// XM_008254821 // GO:0030139 // endocytic vesicle // inferred from electronic annotation /// XM_008254885 // GO:0005768 // endosome // inferred from electronic annotation /// XM_008254885 // GO:0005829 // cytosol // inferred from electronic annotation /// XM_008254885 // GO:0005886 // plasma membrane // inferred from electronic annotation /// XM_008254885 // GO:0005887 // integral component of plasma membrane // inferred from electronic annotation /// XM_008254885 // GO:0009986 // cell surface // inferred from electronic annotation /// XM_008254885 // GO:0016020 // membrane // inferred from electronic annotation /// XM_008254885 // GO:0016021 // integral component of membrane // inferred from electronic annotation /// XM_008254885 // GO:0030139 // endocytic vesicle // inferred from electronic annotation /// XM_008254938 // GO:0005768 // endosome // inferred from electronic annotation /// XM_008254938 // GO:0005829 // cytosol // inferred from electronic annotation /// XM_008254938 // GO:0005886 // plasma membrane // inferred from electronic annotation /// XM_008254938 // GO:0005887 // integral component of plasma membrane // inferred from electronic annotation /// XM_008254938 // GO:0009986 // cell surface // inferred from electronic annotation /// XM_008254938 // GO:0016020 // membrane // inferred from electronic annotation /// XM_008254938 // GO:0016021 // integral component of membrane // inferred from electronic annotation /// XM_008254938 // GO:0030139 // endocytic vesicle // inferred from electronic annotation /// XM_008254984 // GO:0005768 // endosome // inferred from electronic annotation /// XM_008254984 // GO:0005829 // cytosol // inferred from electronic annotation /// XM_008254984 // GO:0005886 // plasma membrane // inferred from electronic annotation /// XM_008254984 // GO:0005887 // integral component of plasma membrane // inferred from electronic annotation /// XM_008254984 // GO:0009986 // cell surface // inferred from electronic annotation /// XM_008254984 // GO:0016020 // membrane // inferred from electronic annotation /// XM_008254984 // GO:0016021 // integral component of membrane // inferred from electronic annotation /// XM_008254984 // GO:0030139 // endocytic vesicle // inferred from electronic annotation /// XM_008255042 // GO:0005768 // endosome // inferred from electronic annotation /// XM_008255042 // GO:0005829 // cytosol // inferred from electronic annotation /// XM_008255042 // GO:0005886 // plasma membrane // inferred from electronic annotation /// XM_008255042 // GO:0005887 // integral component of plasma membrane // inferred from electronic annotation /// XM_008255042 // GO:0009986 // cell surface // inferred from electronic annotation /// XM_008255042 // GO:0016020 // membrane // inferred from electronic annotation /// XM_008255042 // GO:0016021 // integral component of membrane // inferred from electronic annotation /// XM_008255042 // GO:0030139 // endocytic vesicle // inferred from electronic annotation /// ENSOCUT00000026641 // GO:0005886 // plasma membrane // inferred from electronic annotation /// ENSOCUT00000026641 // GO:0016021 // integral component of membrane // inferred from electronic annotation /// ENSOCUT00000026641 // GO:0005829 // cytosol // inferred from electronic annotation /// ENSOCUT00000026641 // GO:0005887 // integral component of plasma membrane // inferred from electronic annotation /// ENSOCUT00000026641 // GO:0005768 // endosome // inferred from electronic annotation /// ENSOCUT00000026641 // GO:0030139 // endocytic vesicle // inferred from electronic annotation /// ENSOCUT00000026641 // GO:0009986 // cell surface // inferred from electronic annotation /// ENSOCUT00000026641 // GO:0016020 // membrane // inferred from electronic annotation XM_008254821 // GO:0004871 // signal transducer activity // inferred from electronic annotation /// XM_008254821 // GO:0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// XM_008254821 // GO:0030165 // PDZ domain binding // inferred from electronic annotation /// XM_008254821 // GO:0035727 // lysophosphatidic acid binding // inferred from electronic annotation /// XM_008254821 // GO:0070915 // lysophosphatidic acid receptor activity // inferred from electronic annotation /// XM_008254885 // GO:0004871 // signal transducer activity // inferred from electronic annotation /// XM_008254885 // GO:0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// XM_008254885 // GO:0030165 // PDZ domain binding // inferred from electronic annotation /// XM_008254885 // GO:0035727 // lysophosphatidic acid binding // inferred from electronic annotation /// XM_008254885 // GO:0070915 // lysophosphatidic acid receptor activity // inferred from electronic annotation /// XM_008254938 // GO:0004871 // signal transducer activity // inferred from electronic annotation /// XM_008254938 // GO:0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// XM_008254938 // GO:0030165 // PDZ domain binding // inferred from electronic annotation /// XM_008254938 // GO:0035727 // lysophosphatidic acid binding // inferred from electronic annotation /// XM_008254938 // GO:0070915 // lysophosphatidic acid receptor activity // inferred from electronic annotation /// XM_008254984 // GO:0004871 // signal transducer activity // inferred from electronic annotation /// XM_008254984 // GO:0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// XM_008254984 // GO:0030165 // PDZ domain binding // inferred from electronic annotation /// XM_008254984 // GO:0035727 // lysophosphatidic acid binding // inferred from electronic annotation /// XM_008254984 // GO:0070915 // lysophosphatidic acid receptor activity // inferred from electronic annotation /// XM_008255042 // GO:0004871 // signal transducer activity // inferred from electronic annotation /// XM_008255042 // GO:0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// XM_008255042 // GO:0030165 // PDZ domain binding // inferred from electronic annotation /// XM_008255042 // GO:0035727 // lysophosphatidic acid binding // inferred from electronic annotation /// XM_008255042 // GO:0070915 // lysophosphatidic acid receptor activity // inferred from electronic annotation /// ENSOCUT00000026641 // GO:0005515 // protein binding // inferred from electronic annotation /// ENSOCUT00000026641 // GO:0070915 // lysophosphatidic acid receptor activity // inferred from electronic annotation /// ENSOCUT00000026641 // GO:0004871 // signal transducer activity // inferred from electronic annotation /// ENSOCUT00000026641 // GO:0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// ENSOCUT00000026641 // GO:0030165 // PDZ domain binding // inferred from electronic annotation /// ENSOCUT00000026641 // GO:0035727 // lysophosphatidic acid binding // inferred from electronic annotation "ENSOCUT00000026641 // Pfam // IPR000276 // G protein-coupled receptor, rhodopsin-like" 1 main transcript_cluster_id: 19724473
19724479 chr1 + 2642082 2855192 44 "XM_002708072 // SVEP1 // sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 // --- // 100357966 /// ENSOCUT00000016260 // SVEP1 // sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 // --- // 100357966" "XM_002708072 // RefSeq // PREDICTED: Oryctolagus cuniculus sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 (SVEP1), mRNA. // chr1 // 100 // 100 // 44 // 44 // 0 /// ENSOCUT00000016260 // ENSEMBL // ensembl:known_by_projection chromosome:OryCun2.0:1:2642082:2858206:1 gene:ENSOCUG00000016227 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 100 // 44 // 44 // 0 /// GENSCAN00000034152 // ENSEMBL // cdna:genscan chromosome:OryCun2.0:1:2640705:2864094:1 transcript_biotype:protein_coding // chr1 // 100 // 82 // 36 // 36 // 0" XM_002708072 // G1TB95 /// ENSOCUT00000016260 // G1TB95 XM_002708072 // Ocu.8045 // eye /// ENSOCUT00000016260 // Ocu.8045 // eye --- --- XM_002708072 // GO:0003682 // chromatin binding // inferred from electronic annotation /// XM_002708072 // GO:0005509 // calcium ion binding // inferred from electronic annotation /// ENSOCUT00000016260 // GO:0005515 // protein binding // inferred from electronic annotation /// ENSOCUT00000016260 // GO:0005509 // calcium ion binding // inferred from electronic annotation /// ENSOCUT00000016260 // GO:0003682 // chromatin binding // inferred from electronic annotation "ENSOCUT00000016260 // Pfam // IPR000436 // Sushi/SCR/CCP domain /// ENSOCUT00000016260 // Pfam // IPR000436 // Sushi/SCR/CCP domain /// ENSOCUT00000016260 // Pfam // IPR000436 // Sushi/SCR/CCP domain /// ENSOCUT00000016260 // Pfam // IPR000436 // Sushi/SCR/CCP domain /// ENSOCUT00000016260 // Pfam // IPR000436 // Sushi/SCR/CCP domain /// ENSOCUT00000016260 // Pfam // IPR000436 // Sushi/SCR/CCP domain /// ENSOCUT00000016260 // Pfam // IPR000436 // Sushi/SCR/CCP domain /// ENSOCUT00000016260 // Pfam // IPR000436 // Sushi/SCR/CCP domain /// ENSOCUT00000016260 // Pfam // IPR000436 // Sushi/SCR/CCP domain /// ENSOCUT00000016260 // Pfam // IPR000436 // Sushi/SCR/CCP domain /// ENSOCUT00000016260 // Pfam // IPR000436 // Sushi/SCR/CCP domain /// ENSOCUT00000016260 // Pfam // IPR000436 // Sushi/SCR/CCP domain /// ENSOCUT00000016260 // Pfam // IPR000436 // Sushi/SCR/CCP domain /// ENSOCUT00000016260 // Pfam // IPR000436 // Sushi/SCR/CCP domain /// ENSOCUT00000016260 // Pfam // IPR000436 // Sushi/SCR/CCP domain /// ENSOCUT00000016260 // Pfam // IPR000436 // Sushi/SCR/CCP domain /// ENSOCUT00000016260 // Pfam // IPR000436 // Sushi/SCR/CCP domain /// ENSOCUT00000016260 // Pfam // IPR000436 // Sushi/SCR/CCP domain /// ENSOCUT00000016260 // Pfam // IPR000436 // Sushi/SCR/CCP domain /// ENSOCUT00000016260 // Pfam // IPR000436 // Sushi/SCR/CCP domain /// ENSOCUT00000016260 // Pfam // IPR000436 // Sushi/SCR/CCP domain /// ENSOCUT00000016260 // Pfam // IPR000436 // Sushi/SCR/CCP domain /// ENSOCUT00000016260 // Pfam // IPR000436 // Sushi/SCR/CCP domain /// ENSOCUT00000016260 // Pfam // IPR000436 // Sushi/SCR/CCP domain /// ENSOCUT00000016260 // Pfam // IPR000436 // Sushi/SCR/CCP domain /// ENSOCUT00000016260 // Pfam // IPR000436 // Sushi/SCR/CCP domain /// ENSOCUT00000016260 // Pfam // IPR000436 // Sushi/SCR/CCP domain /// ENSOCUT00000016260 // Pfam // IPR000436 // Sushi/SCR/CCP domain /// ENSOCUT00000016260 // Pfam // IPR000436 // Sushi/SCR/CCP domain /// ENSOCUT00000016260 // Pfam // IPR000436 // Sushi/SCR/CCP domain /// ENSOCUT00000016260 // Pfam // IPR000436 // Sushi/SCR/CCP domain /// ENSOCUT00000016260 // Pfam // IPR000436 // Sushi/SCR/CCP domain /// ENSOCUT00000016260 // Pfam // IPR000436 // Sushi/SCR/CCP domain /// ENSOCUT00000016260 // Pfam // IPR000742 // EGF-like domain /// ENSOCUT00000016260 // Pfam // IPR000742 // EGF-like domain /// ENSOCUT00000016260 // Pfam // IPR000742 // EGF-like domain /// ENSOCUT00000016260 // Pfam // IPR000742 // EGF-like domain /// ENSOCUT00000016260 // Pfam // IPR000742 // EGF-like domain /// ENSOCUT00000016260 // Pfam // IPR001759 // Pentaxin-related /// ENSOCUT00000016260 // Pfam // IPR001881 // EGF-like calcium-binding domain /// ENSOCUT00000016260 // Pfam // IPR001881 // EGF-like calcium-binding domain /// ENSOCUT00000016260 // Pfam // IPR002035 // von Willebrand factor, type A /// ENSOCUT00000016260 // Pfam // IPR003410 // HYR domain /// ENSOCUT00000016260 // Pfam // IPR003410 // HYR domain /// ENSOCUT00000016260 // Pfam // IPR011641 // Tyrosine-protein kinase ephrin type A/B receptor-like /// ENSOCUT00000016260 // Pfam // IPR011641 // Tyrosine-protein kinase ephrin type A/B receptor-like /// ENSOCUT00000016260 // Pfam // IPR011641 // Tyrosine-protein kinase ephrin type A/B receptor-like /// ENSOCUT00000016260 // Pfam // IPR011641 // Tyrosine-protein kinase ephrin type A/B receptor-like /// ENSOCUT00000016260 // Pfam // IPR013111 // EGF-like domain, extracellular /// ENSOCUT00000016260 // Pfam // IPR013111 // EGF-like domain, extracellular /// ENSOCUT00000016260 // Pfam // IPR013111 // EGF-like domain, extracellular /// ENSOCUT00000016260 // Pfam // IPR013111 // EGF-like domain, extracellular /// ENSOCUT00000016260 // Pfam // IPR013111 // EGF-like domain, extracellular" 1 main transcript_cluster_id: 19724479
19724529 chr1 + 2851603 2851697 13 --- ENSOCUT00000032535 // ENSEMBL // ncrna:novel chromosome:OryCun2.0:1:2851603:2851697:1 gene:ENSOCUG00000028540 gene_biotype:snRNA transcript_biotype:snRNA // chr1 // 100 // 100 // 13 // 13 // 0 --- --- --- --- --- --- 1 main transcript_cluster_id: 19724529

Total number of rows: 26193

Table truncated, full table size 59757 Kbytes.




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