|
| Status |
Public on Mar 30, 2021 |
| Title |
The transcriptome of rabbit conjunctiva in dry eye disease: Large-scale changes and similarity to the human dry eye |
| Organism |
Oryctolagus cuniculus |
| Experiment type |
Expression profiling by array
|
| Summary |
Rabbit Dry Eye Diesease model induced with 3 weekly injections of Concanavalin A into the periorbital lacrimal glands Male Dutch-Belted rabbits.
The pathophysiology of dry eye disease (DED) remains largely unknown, accounting in part for the lack of successful treatments. The transcriptome of full-thickness’s conjunctival tissue from rabbits with DED and from normal controls was determined using microarrays. DED induced large-scale changes in gene transcription involving 5,184 genes (22% of the total). Differentially expressed genes could be segregated into: functional modules and clusters; altered pathways; functionally linked genes; and groups of individual genes of known or suspected pathophysiological relevance to DED. A common feature of these subgroups is the breadth and magnitude of the changes that encompass ocular immunology and essentially all aspects of cell biology. Prominent changes concerned innate and adaptive immune responses; ocular surface inflammation; at least 25 significantly altered signaling pathways; a large number of chemokines; cell cycle; and apoptosis. Comparison of our findings to the limited extant transcriptomic data from DED patients associated with either Sjogren’s syndrome or non-Sjogren’s etiologies revealed a significant correlation between human and rabbit DED transcriptomes. Our data, establishing the large-scale transcriptomic changes of DED and their potential similarity to the human, underscore the enormous complexity of DED; establish a robust animal model of DED; will help expand our understanding of its pathophysiology; and could guide the development of successful therapeutic strategies.
|
| |
|
| Overall design |
Affymetrix GeneChip™ Rabbit Gene 1.0 ST Arrays (ThermoFisher Scientific) were used to analyze transcriptome changes in rabbit conjunctival tissues. Two experimental groups: ConA vs. Naive of rabbit conjunctival tissues were compared in triplicate. To obtain enough RNA, samples from 3 independent animals (6 eye tissues) were pulled for each microarray.
|
| |
|
| Contributor(s) |
Master A, Kontzias A, Huang L, Huang W, Tsioulias A, Zarabi S, Wolek M, Wollocko BM, Honkanen R, Rigas B |
| Citation(s) |
34324523 |
| |
| Submission date |
Mar 29, 2021 |
| Last update date |
Aug 03, 2021 |
| Contact name |
Adam Master |
| E-mail(s) |
adam.master.science@gmail.com
|
| Organization name |
The State University of New York in Stony Brook
|
| Department |
Department of Preventive Medicine
|
| Lab |
Division of Cancer Prevention
|
| Street address |
101 Nicolls Road, Sciences Center
|
| City |
STONY BROOK |
| State/province |
NEW YORK |
| ZIP/Postal code |
11794-8175 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL28441 |
[RabGene-1_0-st] Rabbit Gene 1.0 ST Array [transcript (gene) version] |
|
| Samples (6)
|
| GSM5217341 |
Naive rabbit (control), biological rep1 |
| GSM5217342 |
Naive rabbit (control), biological rep2 |
| GSM5217343 |
Naive rabbit (control), biological rep3 |
|
| Relations |
| BioProject |
PRJNA718236 |
Less...
More...