NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Platform GPL28456 Query DataSets for GPL28456
Status Public on May 16, 2021
Title Agilent-084561 P falciparum 15K Array
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Plasmodium falciparum
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Based on 084561

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Apr 27, 2020
Last update date Apr 27, 2020
Contact name Elisabet Tinto-Font
E-mail(s) elisabet.tinto@gmail.com
Organization name ISGlobal
Department Malaria
Street address c/Rossello 153
City Barcelona
ZIP/Postal code 08036
Country Spain
 
Samples (21) GSM4498899, GSM4498900, GSM4498901, GSM4498902, GSM4498903, GSM4498904 
Series (2)
GSE149392 P. falciparum heat shock response in a PfAP2-HS-defective population compared to its wild type control.
GSE149394 Transcriptomic analysis of heat shock resistance in Plasmodium falciparum

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
NAME NAME
SPOT_ID Spot identifier
CONTROL_TYPE Control type
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
DESCRIPTION Description
SEQUENCE Sequence

Data table
ID COL ROW NAME SPOT_ID CONTROL_TYPE ACCESSION_STRING CHROMOSOMAL_LOCATION DESCRIPTION SEQUENCE
1 96 164 GE_BrightCorner GE_BrightCorner pos
2 96 162 DarkCorner DarkCorner pos
3 96 160 DarkCorner DarkCorner pos
4 96 158 PFF1065C_v7.1_P4/4 PFF1065C_v7.1_P4/4 FALSE PF3D7_0622100 unmapped conserved Plasmodium protein unknown function CTCCTCATTACTTTATATCCTCTAAAAATAGGGATAAAGAACCTCAAGACAAAACACATA
5 96 156 PFC0210C_v7.1_P2/2 PFC0210C_v7.1_P2/2 FALSE PF3D7_0304600 unmapped circumsporozoite (CS) protein GATGAAAATGCTAATGCCAACAGTGCTGTAAAAAATAATAATAACGAAGAACCAAGTGAT
6 96 154 PFI0530C_v7.1_P2/2 PFI0530C_v7.1_P2/2 FALSE PF3D7_0910900 unmapped DNA primase large subunit putative AAGCATATGTAGCCAAAGATTTCAGACAAAATTATGAACACACACAAGATACTAGATTGT
7 96 152 PFC0500W_v7.1_P1/2 PFC0500W_v7.1_P1/2 FALSE PF3D7_0311800 unmapped conserved protein unknown function GTGAGAAGGAAGGGAATTTAAAAGAAGGTGAAGAAGAAAAAATATTTGAAGATGCACTAA
8 96 150 PFL0730W_v7.1_P3/3 PFL0730W_v7.1_P3/3 FALSE PF3D7_1215100 unmapped conserved Plasmodium protein unknown function ATGCTACTCCAAAATATTTCTCTGTATATGGTATGGTTGATTTAAATTGGCCTGAACAAT
9 96 148 PF10_0342_v7.1_P1/2 PF10_0342_v7.1_P1/2 FALSE PF3D7_1035100 unmapped probable protein unknown function CTGAGTTACCAAGTGATTCAATACAAGTGAATAAAGATAACAGAATTCATTTAGATGGAC
10 96 146 PF14_0466_v7.1_P1/1 PF14_0466_v7.1_P1/1 FALSE PF3D7_1448800 unmapped Appr-1-p processing domain protein CTTTGGAGATCTGTCATATTTAAAAGGTGATGCTGTTGTTAATGGAACAAACAAAGTTTT
11 96 144 MAL7P1.201_v7.1_P3/4 MAL7P1.201_v7.1_P3/4 FALSE PF3D7_0705600 unmapped RNA helicase putative AAGTGGTTGATGATGAAATAGAAAAAAGACAAGGTGAATTAGGTCCCATTTTAGAAAAAG
12 96 142 PFF0195C_v7.1_P1/6 PFF0195C_v7.1_P1/6 FALSE PF3D7_0604000 unmapped conserved Plasmodium protein unknown function ATAAAGATAAGTGTAAAGGTAAGTGTAAGTGTGTGAGTGAAAGTAAGCTTATGAATGAGA
13 96 140 PFL0520C_v7.1_P2/3 PFL0520C_v7.1_P2/3 FALSE PF3D7_1210400 unmapped general transcription factor 3C polypeptide 5 putative AATGAACAGCTCGAAAAATATAATGAATAATAAACCCACAGAATTGAATGCTAACACAGG
14 96 138 PFL1960W_v7.1_P2/7 PFL1960W_v7.1_P2/7 FALSE PF3D7_1240600 unmapped erythrocyte membrane protein 1 PfEMP1 AAAAAGAAAGGTGGTAAATGGGAAGCTAAAAATGATGATAAATGCAAGCGTGGAAAACTT
15 96 136 MAL8P1.90_v7.1_P1/1 MAL8P1.90_v7.1_P1/1 FALSE unmapped GCGATTCTGTATTTAGAAAAAGAAGATATAAATCATCAAACAATGTTAGAATATTTTCAA
16 96 134 PF14_0191_v7.1_P1/2 PF14_0191_v7.1_P1/2 FALSE PF3D7_1419700 unmapped conserved Plasmodium protein unknown function ATACAGATAGTAGCACTGAAGGAGACGAGTTTGATATTGTTTTAAATAGTGTTGTGATTA
17 96 132 MAL13P1.380_v7.1_P5/22 MAL13P1.380_v7.1_P5/22 FALSE PF3D7_1343800 unmapped conserved Plasmodium protein unknown function AGCCTTAATTTAAATCCAGTAAAAGTCGTAAGTCAATTATCTAAAAGATCAGAATCGTAT
18 96 130 PF08_0108_v7.1_P1/2 PF08_0108_v7.1_P1/2 FALSE PF3D7_0808200 unmapped plasmepsin X TATTTGATTGTACCGGGTGTTTATTCGAGGAAAAAGAATCTTCTCATGTGATACCTTTAA
19 96 128 PF07_0066_v7.1_P3/4 PF07_0066_v7.1_P3/4 FALSE PF3D7_0716000 unmapped RNA-binding protein putative ATGGAGATGAAACATCAGACACATATATAAGCTTAGTAGAATATGTAAATACCGAGAATG
20 96 126 PF14_0343_v7.1_P5/7 PF14_0343_v7.1_P5/7 FALSE PF3D7_1436200 unmapped conserved Plasmodium protein unknown function TATTATTCAATACGATGATGAGAAATACAAAATATGTGACCCATCAAAGGTGTACCCTTA

Total number of rows: 15744

Table truncated, full table size 2693 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap